Directories
¶
| Path | Synopsis |
|---|---|
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Package Inventory containing example part structures and defines a PartSource interface which allows the making of a custom inventory.
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Package Inventory containing example part structures and defines a PartSource interface which allows the making of a custom inventory. |
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Example labware definitions
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Example labware definitions |
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Example liquidclasses and liquid properties
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Example liquidclasses and liquid properties |
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Package parser provides methods for reading file formats, in particular focused toward dna sequence parsing
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Package parser provides methods for reading file formats, in particular focused toward dna sequence parsing |
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Package for working with bioprocessing unitoperations
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Package for working with bioprocessing unitoperations |
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Package for dealing with manipulation of buffers Package for dealing with manipulation of buffers
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Package for dealing with manipulation of buffers Package for dealing with manipulation of buffers |
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order
pacakge order deals with adding order details to an LHComponent.
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pacakge order deals with adding order details to an LHComponent. |
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Look up tables stroring device properties.
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Look up tables stroring device properties. |
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Package doe facilitates DOE methodology in antha
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Package doe facilitates DOE methodology in antha |
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Package containing formulae for the estimation of evaporation times based upon thermodynamics and empirical equations Package for performing engineering calculations; at present this consists of evaporation rate estimation, thawtime estimation and fluid dynamics Package for performing engineering calculations; at present this consists of evaporation rate estimation, thawtime estimation and fluid dynamics
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Package containing formulae for the estimation of evaporation times based upon thermodynamics and empirical equations Package for performing engineering calculations; at present this consists of evaporation rate estimation, thawtime estimation and fluid dynamics Package for performing engineering calculations; at present this consists of evaporation rate estimation, thawtime estimation and fluid dynamics |
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Package enzymes for working with enzymes; in particular restriction enzymes
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Package enzymes for working with enzymes; in particular restriction enzymes |
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lookup
Package lookup enables looking up restriction enzyme properties from name.
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Package lookup enables looking up restriction enzyme properties from name. |
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Package export provides functions for exporting common file formats into the Antha File type.
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Package export provides functions for exporting common file formats into the Antha File type. |
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Package for interacting with the iGem registry
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Package for interacting with the iGem registry |
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Package jobfile provides for basic operations for manipulating files associated with a job
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Package jobfile provides for basic operations for manipulating files associated with a job |
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This is a package that contains types and function used for PCR reactions
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This is a package that contains types and function used for PCR reactions |
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Package platereader contains functions for manipulating absorbance readings and platereader data.
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Package platereader contains functions for manipulating absorbance readings and platereader data. |
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dataset
interface platereaderparse.go Part of the Antha language Copyright (C) 2015 The Antha authors.
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interface platereaderparse.go Part of the Antha language Copyright (C) 2015 The Antha authors. |
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Package plot provides methods for plotting data.
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Package plot provides methods for plotting data. |
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Package for interacting with the pubchem database to look up chemical properties
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Package for interacting with the pubchem database to look up chemical properties |
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Package rebase for parsing the rebase restriction enzyme database
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Package rebase for parsing the rebase restriction enzyme database |
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Package schemas contains utilities for defining data schemas.
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Package schemas contains utilities for defining data schemas. |
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Package search is a utility package providing functions useful for: Searching for a target entry in a slice; Removing duplicate values from a slice; Comparing the Name of two entries of any type with a Name() method returning a string.
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Package search is a utility package providing functions useful for: Searching for a target entry in a slice; Removing duplicate values from a slice; Comparing the Name of two entries of any type with a Name() method returning a string. |
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Package sequences is for interacting with and manipulating biological sequences; in extension to methods available in wtype Package sequences is for interacting with and manipulating biological sequences; in extension to methods available in wtype Package sequences is for interacting with and manipulating biological sequences; in extension to methods available in wtype Package sequences is for interacting with and manipulating biological sequences; in extension to methods available in wtype Package sequences is for interacting with and manipulating biological sequences; in extension to methods available in wtype Package sequences is for interacting with and manipulating biological sequences; in extension to methods available in wtype Package sequences is for interacting with and manipulating biological sequences; in extension to methods available in wtype synthesisvalidation.go Package sequences is for interacting with and manipulating biological sequences; in extension to methods available in wtype
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Package sequences is for interacting with and manipulating biological sequences; in extension to methods available in wtype Package sequences is for interacting with and manipulating biological sequences; in extension to methods available in wtype Package sequences is for interacting with and manipulating biological sequences; in extension to methods available in wtype Package sequences is for interacting with and manipulating biological sequences; in extension to methods available in wtype Package sequences is for interacting with and manipulating biological sequences; in extension to methods available in wtype Package sequences is for interacting with and manipulating biological sequences; in extension to methods available in wtype Package sequences is for interacting with and manipulating biological sequences; in extension to methods available in wtype synthesisvalidation.go Package sequences is for interacting with and manipulating biological sequences; in extension to methods available in wtype |
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Seqtools
Package for processing sequencing results
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Package for processing sequencing results |
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align
Package align allows aligning Antha sequences using the biogo implementation of the Needleman-Wunsch and Smith-Waterman alignment algorithms
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Package align allows aligning Antha sequences using the biogo implementation of the Needleman-Wunsch and Smith-Waterman alignment algorithms |
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biogo/biogo/feat
Package feat provides the base for storage and manipulation of biological interval information.
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Package feat provides the base for storage and manipulation of biological interval information. |
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biogo/biogo/io/seqio
Package seqio provides interfaces for sequence I/O functions.
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Package seqio provides interfaces for sequence I/O functions. |
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biogo/biogo/io/seqio/fasta
Package fasta provides types to read and write FASTA format files.
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Package fasta provides types to read and write FASTA format files. |
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biogo/biogo/seq
Package seq provides the base for storage and manipulation of biological sequence information.
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Package seq provides the base for storage and manipulation of biological sequence information. |
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biogo/biogo/seq/linear
Package linear handles single sequences.
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Package linear handles single sequences. |
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biogo/ncbi/blast
Package blast provides support for interaction with the NCBI BLAST service.
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Package blast provides support for interaction with the NCBI BLAST service. |
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biogo/ncbi/entrez
Package entrez provides support for interaction with the NCBI Entrez Utility Programs (E-utilities).
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Package entrez provides support for interaction with the NCBI Entrez Utility Programs (E-utilities). |
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biogo/ncbi/ncbi
Package ncbi provides support for interaction with the NCBI services, Entrez and Blast.
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Package ncbi provides support for interaction with the NCBI services, Entrez and Blast. |
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blast
Package for performing blast queries
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Package for performing blast queries |
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entrez
package for querying all of NCBI databases
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package for querying all of NCBI databases |
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oligos
Package for designing oligos
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Package for designing oligos |
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parse
package parse converts DNA sequence files into a set of DNA sequences.
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package parse converts DNA sequence files into a set of DNA sequences. |
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parse/fasta
package fasta converts DNA sequence files in FASTA format into a set of DNA sequences.
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package fasta converts DNA sequence files in FASTA format into a set of DNA sequences. |
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parse/gdx
package gdx converts DNA sequence files in .gdx format into a set of DNA sequences.
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package gdx converts DNA sequence files in .gdx format into a set of DNA sequences. |
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parse/genbank
package genbank converts DNA sequence files in genbank format into a set of DNA sequences.
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package genbank converts DNA sequence files in genbank format into a set of DNA sequences. |
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plasmid
Package plasmid checks for common plasmid features in a test DNA sequence.
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Package plasmid checks for common plasmid features in a test DNA sequence. |
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Functions used in calculating mass transfer in microwells
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Functions used in calculating mass transfer in microwells |
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solutions is a utility package for working with solutions of LHComponents utility package for working with solutions solutions is a utility package for working with solutions of LHComponents
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solutions is a utility package for working with solutions of LHComponents utility package for working with solutions solutions is a utility package for working with solutions of LHComponents |
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Package spreadsheet for interacting with spreadsheets Package spreadsheet for interacting with spreadsheets
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Package spreadsheet for interacting with spreadsheets Package spreadsheet for interacting with spreadsheets |
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Package text formats strings for printing in a terminal using ansi codes
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Package text formats strings for printing in a terminal using ansi codes |
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