genbank

package
Version: v0.0.0-...-040724e Latest Latest
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Published: Jun 6, 2019 License: BSD-3-Clause, GPL-2.0, BSD-3-Clause, GPL-2.0 Imports: 8 Imported by: 0

Documentation

Overview

package genbank converts DNA sequence files in genbank format into a set of DNA sequences.

Index

Constants

This section is empty.

Variables

This section is empty.

Functions

func GenbankContentsToAnnotatedSeq

func GenbankContentsToAnnotatedSeq(contentsinbytes []byte) (annotated wtype.DNASequence, err error)

parses contents of a genbank file into a DNASEquence making features from annotations

func GenbankFeatureToDNASequence

func GenbankFeatureToDNASequence(file wtype.File, featurename string) (wtype.DNASequence, error)

Parses a feature from a genbank file into a DNASequence.

func GenbankToAnnotatedSeq

func GenbankToAnnotatedSeq(file wtype.File) (annotated wtype.DNASequence, err error)

parses a genbank file into a DNASEquence making features from annotations

func GenbankToFeaturelessDNASequence

func GenbankToFeaturelessDNASequence(sequenceFile wtype.File) (wtype.DNASequence, error)

Parses file of type .gb to DNASequence. Features are not annotated

Types

This section is empty.

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