biostuff

module

v0.1.3 Latest Latest Go to latest Published: Sep 10, 2021 License: MIT

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Repository

github.com/fluhus/biostuff

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README ¶

Golgi

Libraries for handling biological data. Emphasis on minimalism and efficiency.

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Directories ¶

Path	Synopsis
formats
bed Package bed handles BED I/O. This package uses the format described in: https://en.wikipedia.org/wiki/BED_(file_format)	Package bed handles BED I/O. This package uses the format described in: https://en.wikipedia.org/wiki/BED_(file_format)
fasta Package fasta handles fasta I/O. This package uses the format described in: https://en.wikipedia.org/wiki/FASTA_format This package does not validate sequence characters.	Package fasta handles fasta I/O. This package uses the format described in: https://en.wikipedia.org/wiki/FASTA_format This package does not validate sequence characters.
fasta/fastaserver Command fastaserver is a server that serves fasta sequences.	Command fastaserver is a server that serves fasta sequences.
fastq Package fastq handles fastq I/O. This package uses the format described in: https://en.wikipedia.org/wiki/FASTQ_format This package does not validate sequence and quality characters.	Package fastq handles fastq I/O. This package uses the format described in: https://en.wikipedia.org/wiki/FASTQ_format This package does not validate sequence and quality characters.
sam Package sam handles SAM I/O. This package uses the format described in https://en.wikipedia.org/wiki/SAM_(file_format).	Package sam handles SAM I/O. This package uses the format described in https://en.wikipedia.org/wiki/SAM_(file_format).
regions Package regions provides an index for searching on intervals.	Package regions provides an index for searching on intervals.
sequtil Package sequtil provides genetic sequence processing functions.	Package sequtil provides genetic sequence processing functions.

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