molecular_sequence_go_proto

package
v0.7.4 Latest Latest
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 Go to latest Published: Aug 10, 2022 License: Apache-2.0 Imports: 8 Imported by: 1

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Constants

This section is empty.

Variables

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var File_proto_google_fhir_proto_r5_core_resources_molecular_sequence_proto protoreflect.FileDescriptor

Functions

This section is empty.

Types

type MolecularSequence 

type MolecularSequence struct {

	// Logical id of this artifact
	Id *datatypes_go_proto.Id `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// Metadata about the resource
	Meta *datatypes_go_proto.Meta `protobuf:"bytes,2,opt,name=meta,proto3" json:"meta,omitempty"`
	// A set of rules under which this content was created
	ImplicitRules *datatypes_go_proto.Uri `protobuf:"bytes,3,opt,name=implicit_rules,json=implicitRules,proto3" json:"implicit_rules,omitempty"`
	// Language of the resource content
	Language *datatypes_go_proto.Code `protobuf:"bytes,4,opt,name=language,proto3" json:"language,omitempty"`
	// Text summary of the resource, for human interpretation
	Text *datatypes_go_proto.Narrative `protobuf:"bytes,5,opt,name=text,proto3" json:"text,omitempty"`
	// Contained, inline Resources
	Contained []*any.Any `protobuf:"bytes,6,rep,name=contained,proto3" json:"contained,omitempty"`
	// Additional content defined by implementations
	Extension []*datatypes_go_proto.Extension `protobuf:"bytes,8,rep,name=extension,proto3" json:"extension,omitempty"`
	// Extensions that cannot be ignored
	ModifierExtension []*datatypes_go_proto.Extension `protobuf:"bytes,9,rep,name=modifier_extension,json=modifierExtension,proto3" json:"modifier_extension,omitempty"`
	// Unique ID for this particular sequence. This is a FHIR-defined id
	Identifier []*datatypes_go_proto.Identifier `protobuf:"bytes,10,rep,name=identifier,proto3" json:"identifier,omitempty"`
	Type       *MolecularSequence_TypeCode      `protobuf:"bytes,11,opt,name=type,proto3" json:"type,omitempty"`
	// Base number of coordinate system (0 for 0-based numbering or coordinates,
	// inclusive start, exclusive end, 1 for 1-based numbering, inclusive start,
	// inclusive end)
	CoordinateSystem *datatypes_go_proto.Integer `protobuf:"bytes,12,opt,name=coordinate_system,json=coordinateSystem,proto3" json:"coordinate_system,omitempty"`
	// Who and/or what this is about
	Patient *datatypes_go_proto.Reference `protobuf:"bytes,13,opt,name=patient,proto3" json:"patient,omitempty"`
	// Specimen used for sequencing
	Specimen *datatypes_go_proto.Reference `protobuf:"bytes,14,opt,name=specimen,proto3" json:"specimen,omitempty"`
	// The method for sequencing
	Device *datatypes_go_proto.Reference `protobuf:"bytes,15,opt,name=device,proto3" json:"device,omitempty"`
	// Who should be responsible for test result
	Performer *datatypes_go_proto.Reference `protobuf:"bytes,16,opt,name=performer,proto3" json:"performer,omitempty"`
	// The number of copies of the sequence of interest.  (RNASeq)
	Quantity     *datatypes_go_proto.Quantity    `protobuf:"bytes,17,opt,name=quantity,proto3" json:"quantity,omitempty"`
	ReferenceSeq *MolecularSequence_ReferenceSeq `protobuf:"bytes,18,opt,name=reference_seq,json=referenceSeq,proto3" json:"reference_seq,omitempty"`
	Variant      []*MolecularSequence_Variant    `protobuf:"bytes,19,rep,name=variant,proto3" json:"variant,omitempty"`
	// Sequence that was observed
	ObservedSeq *datatypes_go_proto.String   `protobuf:"bytes,20,opt,name=observed_seq,json=observedSeq,proto3" json:"observed_seq,omitempty"`
	Quality     []*MolecularSequence_Quality `protobuf:"bytes,21,rep,name=quality,proto3" json:"quality,omitempty"`
	// Average number of reads representing a given nucleotide in the
	// reconstructed sequence
	ReadCoverage *datatypes_go_proto.Integer     `protobuf:"bytes,22,opt,name=read_coverage,json=readCoverage,proto3" json:"read_coverage,omitempty"`
	Repository   []*MolecularSequence_Repository `protobuf:"bytes,23,rep,name=repository,proto3" json:"repository,omitempty"`
	// Pointer to next atomic sequence
	Pointer          []*datatypes_go_proto.Reference       `protobuf:"bytes,24,rep,name=pointer,proto3" json:"pointer,omitempty"`
	StructureVariant []*MolecularSequence_StructureVariant `protobuf:"bytes,25,rep,name=structure_variant,json=structureVariant,proto3" json:"structure_variant,omitempty"`
	// contains filtered or unexported fields
}

Auto-generated from StructureDefinition for MolecularSequence, last updated 2019-12-31T21:03:40.621+11:00. Information about a biological sequence. See http://hl7.org/fhir/StructureDefinition/MolecularSequence

func (*MolecularSequence) Descriptor deprecated 

func (*MolecularSequence) Descriptor() ([]byte, []int)

Deprecated: Use MolecularSequence.ProtoReflect.Descriptor instead.

func (*MolecularSequence) GetContained 

func (x *MolecularSequence) GetContained() []*any.Any

func (*MolecularSequence) GetCoordinateSystem 

func (x *MolecularSequence) GetCoordinateSystem() *datatypes_go_proto.Integer

func (*MolecularSequence) GetDevice 

func (x *MolecularSequence) GetDevice() *datatypes_go_proto.Reference

func (*MolecularSequence) GetExtension 

func (x *MolecularSequence) GetExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence) GetId 

func (x *MolecularSequence) GetId() *datatypes_go_proto.Id

func (*MolecularSequence) GetIdentifier 

func (x *MolecularSequence) GetIdentifier() []*datatypes_go_proto.Identifier

func (*MolecularSequence) GetImplicitRules 

func (x *MolecularSequence) GetImplicitRules() *datatypes_go_proto.Uri

func (*MolecularSequence) GetLanguage 

func (x *MolecularSequence) GetLanguage() *datatypes_go_proto.Code

func (*MolecularSequence) GetMeta 

func (x *MolecularSequence) GetMeta() *datatypes_go_proto.Meta

func (*MolecularSequence) GetModifierExtension 

func (x *MolecularSequence) GetModifierExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence) GetObservedSeq 

func (x *MolecularSequence) GetObservedSeq() *datatypes_go_proto.String

func (*MolecularSequence) GetPatient 

func (x *MolecularSequence) GetPatient() *datatypes_go_proto.Reference

func (*MolecularSequence) GetPerformer 

func (x *MolecularSequence) GetPerformer() *datatypes_go_proto.Reference

func (*MolecularSequence) GetPointer 

func (x *MolecularSequence) GetPointer() []*datatypes_go_proto.Reference

func (*MolecularSequence) GetQuality 

func (x *MolecularSequence) GetQuality() []*MolecularSequence_Quality

func (*MolecularSequence) GetQuantity 

func (x *MolecularSequence) GetQuantity() *datatypes_go_proto.Quantity

func (*MolecularSequence) GetReadCoverage 

func (x *MolecularSequence) GetReadCoverage() *datatypes_go_proto.Integer

func (*MolecularSequence) GetReferenceSeq 

func (x *MolecularSequence) GetReferenceSeq() *MolecularSequence_ReferenceSeq

func (*MolecularSequence) GetRepository 

func (x *MolecularSequence) GetRepository() []*MolecularSequence_Repository

func (*MolecularSequence) GetSpecimen 

func (x *MolecularSequence) GetSpecimen() *datatypes_go_proto.Reference

func (*MolecularSequence) GetStructureVariant 

func (x *MolecularSequence) GetStructureVariant() []*MolecularSequence_StructureVariant

func (*MolecularSequence) GetText 

func (x *MolecularSequence) GetText() *datatypes_go_proto.Narrative

func (*MolecularSequence) GetType 

func (x *MolecularSequence) GetType() *MolecularSequence_TypeCode

func (*MolecularSequence) GetVariant 

func (x *MolecularSequence) GetVariant() []*MolecularSequence_Variant

func (*MolecularSequence) ProtoMessage 

func (*MolecularSequence) ProtoMessage()

func (*MolecularSequence) ProtoReflect 

func (x *MolecularSequence) ProtoReflect() protoreflect.Message

func (*MolecularSequence) Reset 

func (x *MolecularSequence) Reset()

func (*MolecularSequence) String 

func (x *MolecularSequence) String() string

type MolecularSequence_Quality 

type MolecularSequence_Quality struct {

	// Unique id for inter-element referencing
	Id *datatypes_go_proto.Id `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// Additional content defined by implementations
	Extension []*datatypes_go_proto.Extension `protobuf:"bytes,2,rep,name=extension,proto3" json:"extension,omitempty"`
	// Extensions that cannot be ignored even if unrecognized
	ModifierExtension []*datatypes_go_proto.Extension     `protobuf:"bytes,3,rep,name=modifier_extension,json=modifierExtension,proto3" json:"modifier_extension,omitempty"`
	Type              *MolecularSequence_Quality_TypeCode `protobuf:"bytes,4,opt,name=type,proto3" json:"type,omitempty"`
	// Standard sequence for comparison
	StandardSequence *datatypes_go_proto.CodeableConcept `protobuf:"bytes,5,opt,name=standard_sequence,json=standardSequence,proto3" json:"standard_sequence,omitempty"`
	// Start position of the sequence
	Start *datatypes_go_proto.Integer `protobuf:"bytes,6,opt,name=start,proto3" json:"start,omitempty"`
	// End position of the sequence
	End *datatypes_go_proto.Integer `protobuf:"bytes,7,opt,name=end,proto3" json:"end,omitempty"`
	// Quality score for the comparison
	Score *datatypes_go_proto.Quantity `protobuf:"bytes,8,opt,name=score,proto3" json:"score,omitempty"`
	// Method to get quality
	Method *datatypes_go_proto.CodeableConcept `protobuf:"bytes,9,opt,name=method,proto3" json:"method,omitempty"`
	// True positives from the perspective of the truth data
	TruthTp *datatypes_go_proto.Decimal `protobuf:"bytes,10,opt,name=truth_tp,json=truthTP,proto3" json:"truth_tp,omitempty"`
	// True positives from the perspective of the query data
	QueryTp *datatypes_go_proto.Decimal `protobuf:"bytes,11,opt,name=query_tp,json=queryTP,proto3" json:"query_tp,omitempty"`
	// False negatives
	TruthFn *datatypes_go_proto.Decimal `protobuf:"bytes,12,opt,name=truth_fn,json=truthFN,proto3" json:"truth_fn,omitempty"`
	// False positives
	QueryFp *datatypes_go_proto.Decimal `protobuf:"bytes,13,opt,name=query_fp,json=queryFP,proto3" json:"query_fp,omitempty"`
	// False positives where the non-REF alleles in the Truth and Query Call
	// Sets match
	GtFp *datatypes_go_proto.Decimal `protobuf:"bytes,14,opt,name=gt_fp,json=gtFP,proto3" json:"gt_fp,omitempty"`
	// Precision of comparison
	Precision *datatypes_go_proto.Decimal `protobuf:"bytes,15,opt,name=precision,proto3" json:"precision,omitempty"`
	// Recall of comparison
	Recall *datatypes_go_proto.Decimal `protobuf:"bytes,16,opt,name=recall,proto3" json:"recall,omitempty"`
	// F-score
	FScore *datatypes_go_proto.Decimal    `protobuf:"bytes,17,opt,name=f_score,json=fScore,proto3" json:"f_score,omitempty"`
	Roc    *MolecularSequence_Quality_Roc `protobuf:"bytes,18,opt,name=roc,proto3" json:"roc,omitempty"`
	// contains filtered or unexported fields
}

An set of value as quality of sequence

func (*MolecularSequence_Quality) Descriptor deprecated 

func (*MolecularSequence_Quality) Descriptor() ([]byte, []int)

Deprecated: Use MolecularSequence_Quality.ProtoReflect.Descriptor instead.

func (*MolecularSequence_Quality) GetEnd 

func (x *MolecularSequence_Quality) GetEnd() *datatypes_go_proto.Integer

func (*MolecularSequence_Quality) GetExtension 

func (x *MolecularSequence_Quality) GetExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_Quality) GetFScore 

func (x *MolecularSequence_Quality) GetFScore() *datatypes_go_proto.Decimal

func (*MolecularSequence_Quality) GetGtFp 

func (x *MolecularSequence_Quality) GetGtFp() *datatypes_go_proto.Decimal

func (*MolecularSequence_Quality) GetId 

func (x *MolecularSequence_Quality) GetId() *datatypes_go_proto.Id

func (*MolecularSequence_Quality) GetMethod 

func (x *MolecularSequence_Quality) GetMethod() *datatypes_go_proto.CodeableConcept

func (*MolecularSequence_Quality) GetModifierExtension 

func (x *MolecularSequence_Quality) GetModifierExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_Quality) GetPrecision 

func (x *MolecularSequence_Quality) GetPrecision() *datatypes_go_proto.Decimal

func (*MolecularSequence_Quality) GetQueryFp 

func (x *MolecularSequence_Quality) GetQueryFp() *datatypes_go_proto.Decimal

func (*MolecularSequence_Quality) GetQueryTp 

func (x *MolecularSequence_Quality) GetQueryTp() *datatypes_go_proto.Decimal

func (*MolecularSequence_Quality) GetRecall 

func (x *MolecularSequence_Quality) GetRecall() *datatypes_go_proto.Decimal

func (*MolecularSequence_Quality) GetRoc 

func (x *MolecularSequence_Quality) GetRoc() *MolecularSequence_Quality_Roc

func (*MolecularSequence_Quality) GetScore 

func (x *MolecularSequence_Quality) GetScore() *datatypes_go_proto.Quantity

func (*MolecularSequence_Quality) GetStandardSequence 

func (x *MolecularSequence_Quality) GetStandardSequence() *datatypes_go_proto.CodeableConcept

func (*MolecularSequence_Quality) GetStart 

func (x *MolecularSequence_Quality) GetStart() *datatypes_go_proto.Integer

func (*MolecularSequence_Quality) GetTruthFn 

func (x *MolecularSequence_Quality) GetTruthFn() *datatypes_go_proto.Decimal

func (*MolecularSequence_Quality) GetTruthTp 

func (x *MolecularSequence_Quality) GetTruthTp() *datatypes_go_proto.Decimal

func (*MolecularSequence_Quality) GetType 

func (x *MolecularSequence_Quality) GetType() *MolecularSequence_Quality_TypeCode

func (*MolecularSequence_Quality) ProtoMessage 

func (*MolecularSequence_Quality) ProtoMessage()

func (*MolecularSequence_Quality) ProtoReflect 

func (x *MolecularSequence_Quality) ProtoReflect() protoreflect.Message

func (*MolecularSequence_Quality) Reset 

func (x *MolecularSequence_Quality) Reset()

func (*MolecularSequence_Quality) String 

func (x *MolecularSequence_Quality) String() string

type MolecularSequence_Quality_Roc 

type MolecularSequence_Quality_Roc struct {

	// Unique id for inter-element referencing
	Id *datatypes_go_proto.Id `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// Additional content defined by implementations
	Extension []*datatypes_go_proto.Extension `protobuf:"bytes,2,rep,name=extension,proto3" json:"extension,omitempty"`
	// Extensions that cannot be ignored even if unrecognized
	ModifierExtension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=modifier_extension,json=modifierExtension,proto3" json:"modifier_extension,omitempty"`
	// Genotype quality score
	Score []*datatypes_go_proto.Integer `protobuf:"bytes,4,rep,name=score,proto3" json:"score,omitempty"`
	// Roc score true positive numbers
	NumTp []*datatypes_go_proto.Integer `protobuf:"bytes,5,rep,name=num_tp,json=numTP,proto3" json:"num_tp,omitempty"`
	// Roc score false positive numbers
	NumFp []*datatypes_go_proto.Integer `protobuf:"bytes,6,rep,name=num_fp,json=numFP,proto3" json:"num_fp,omitempty"`
	// Roc score false negative numbers
	NumFn []*datatypes_go_proto.Integer `protobuf:"bytes,7,rep,name=num_fn,json=numFN,proto3" json:"num_fn,omitempty"`
	// Precision of the GQ score
	Precision []*datatypes_go_proto.Decimal `protobuf:"bytes,8,rep,name=precision,proto3" json:"precision,omitempty"`
	// Sensitivity of the GQ score
	Sensitivity []*datatypes_go_proto.Decimal `protobuf:"bytes,9,rep,name=sensitivity,proto3" json:"sensitivity,omitempty"`
	// FScore of the GQ score
	FMeasure []*datatypes_go_proto.Decimal `protobuf:"bytes,10,rep,name=f_measure,json=fMeasure,proto3" json:"f_measure,omitempty"`
	// contains filtered or unexported fields
}

Receiver Operator Characteristic (ROC) Curve

func (*MolecularSequence_Quality_Roc) Descriptor deprecated 

func (*MolecularSequence_Quality_Roc) Descriptor() ([]byte, []int)

Deprecated: Use MolecularSequence_Quality_Roc.ProtoReflect.Descriptor instead.

func (*MolecularSequence_Quality_Roc) GetExtension 

func (x *MolecularSequence_Quality_Roc) GetExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_Quality_Roc) GetFMeasure 

func (x *MolecularSequence_Quality_Roc) GetFMeasure() []*datatypes_go_proto.Decimal

func (*MolecularSequence_Quality_Roc) GetId 

func (x *MolecularSequence_Quality_Roc) GetId() *datatypes_go_proto.Id

func (*MolecularSequence_Quality_Roc) GetModifierExtension 

func (x *MolecularSequence_Quality_Roc) GetModifierExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_Quality_Roc) GetNumFn 

func (x *MolecularSequence_Quality_Roc) GetNumFn() []*datatypes_go_proto.Integer

func (*MolecularSequence_Quality_Roc) GetNumFp 

func (x *MolecularSequence_Quality_Roc) GetNumFp() []*datatypes_go_proto.Integer

func (*MolecularSequence_Quality_Roc) GetNumTp 

func (x *MolecularSequence_Quality_Roc) GetNumTp() []*datatypes_go_proto.Integer

func (*MolecularSequence_Quality_Roc) GetPrecision 

func (x *MolecularSequence_Quality_Roc) GetPrecision() []*datatypes_go_proto.Decimal

func (*MolecularSequence_Quality_Roc) GetScore 

func (x *MolecularSequence_Quality_Roc) GetScore() []*datatypes_go_proto.Integer

func (*MolecularSequence_Quality_Roc) GetSensitivity 

func (x *MolecularSequence_Quality_Roc) GetSensitivity() []*datatypes_go_proto.Decimal

func (*MolecularSequence_Quality_Roc) ProtoMessage 

func (*MolecularSequence_Quality_Roc) ProtoMessage()

func (*MolecularSequence_Quality_Roc) ProtoReflect 

func (x *MolecularSequence_Quality_Roc) ProtoReflect() protoreflect.Message

func (*MolecularSequence_Quality_Roc) Reset 

func (x *MolecularSequence_Quality_Roc) Reset()

func (*MolecularSequence_Quality_Roc) String 

func (x *MolecularSequence_Quality_Roc) String() string

type MolecularSequence_Quality_TypeCode 

type MolecularSequence_Quality_TypeCode struct {
	Value     codes_go_proto.QualityTypeCode_Value `protobuf:"varint,1,opt,name=value,proto3,enum=google.fhir.r5.core.QualityTypeCode_Value" json:"value,omitempty"`
	Id        *datatypes_go_proto.String           `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
	Extension []*datatypes_go_proto.Extension      `protobuf:"bytes,3,rep,name=extension,proto3" json:"extension,omitempty"`
	// contains filtered or unexported fields
}

indel | snp | unknown

func (*MolecularSequence_Quality_TypeCode) Descriptor deprecated 

func (*MolecularSequence_Quality_TypeCode) Descriptor() ([]byte, []int)

Deprecated: Use MolecularSequence_Quality_TypeCode.ProtoReflect.Descriptor instead.

func (*MolecularSequence_Quality_TypeCode) GetExtension 

func (x *MolecularSequence_Quality_TypeCode) GetExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_Quality_TypeCode) GetId 

func (x *MolecularSequence_Quality_TypeCode) GetId() *datatypes_go_proto.String

func (*MolecularSequence_Quality_TypeCode) GetValue 

func (x *MolecularSequence_Quality_TypeCode) GetValue() codes_go_proto.QualityTypeCode_Value

func (*MolecularSequence_Quality_TypeCode) ProtoMessage 

func (*MolecularSequence_Quality_TypeCode) ProtoMessage()

func (*MolecularSequence_Quality_TypeCode) ProtoReflect 

func (x *MolecularSequence_Quality_TypeCode) ProtoReflect() protoreflect.Message

func (*MolecularSequence_Quality_TypeCode) Reset 

func (x *MolecularSequence_Quality_TypeCode) Reset()

func (*MolecularSequence_Quality_TypeCode) String 

func (x *MolecularSequence_Quality_TypeCode) String() string

type MolecularSequence_ReferenceSeq 

type MolecularSequence_ReferenceSeq struct {

	// Unique id for inter-element referencing
	Id *datatypes_go_proto.Id `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// Additional content defined by implementations
	Extension []*datatypes_go_proto.Extension `protobuf:"bytes,2,rep,name=extension,proto3" json:"extension,omitempty"`
	// Extensions that cannot be ignored even if unrecognized
	ModifierExtension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=modifier_extension,json=modifierExtension,proto3" json:"modifier_extension,omitempty"`
	// Chromosome containing genetic finding
	Chromosome *datatypes_go_proto.CodeableConcept `protobuf:"bytes,4,opt,name=chromosome,proto3" json:"chromosome,omitempty"`
	// The Genome Build used for reference, following GRCh build versions e.g.
	// 'GRCh 37'
	GenomeBuild *datatypes_go_proto.String                      `protobuf:"bytes,5,opt,name=genome_build,json=genomeBuild,proto3" json:"genome_build,omitempty"`
	Orientation *MolecularSequence_ReferenceSeq_OrientationCode `protobuf:"bytes,6,opt,name=orientation,proto3" json:"orientation,omitempty"`
	// Reference identifier
	ReferenceSeqId *datatypes_go_proto.CodeableConcept `protobuf:"bytes,7,opt,name=reference_seq_id,json=referenceSeqId,proto3" json:"reference_seq_id,omitempty"`
	// A pointer to another MolecularSequence entity as reference sequence
	ReferenceSeqPointer *datatypes_go_proto.Reference `protobuf:"bytes,8,opt,name=reference_seq_pointer,json=referenceSeqPointer,proto3" json:"reference_seq_pointer,omitempty"`
	// A string to represent reference sequence
	ReferenceSeqString *datatypes_go_proto.String                 `protobuf:"bytes,9,opt,name=reference_seq_string,json=referenceSeqString,proto3" json:"reference_seq_string,omitempty"`
	Strand             *MolecularSequence_ReferenceSeq_StrandCode `protobuf:"bytes,10,opt,name=strand,proto3" json:"strand,omitempty"`
	// Start position of the window on the  reference sequence
	WindowStart *datatypes_go_proto.Integer `protobuf:"bytes,11,opt,name=window_start,json=windowStart,proto3" json:"window_start,omitempty"`
	// End position of the window on the reference sequence
	WindowEnd *datatypes_go_proto.Integer `protobuf:"bytes,12,opt,name=window_end,json=windowEnd,proto3" json:"window_end,omitempty"`
	// contains filtered or unexported fields
}

A sequence used as reference

func (*MolecularSequence_ReferenceSeq) Descriptor deprecated 

func (*MolecularSequence_ReferenceSeq) Descriptor() ([]byte, []int)

Deprecated: Use MolecularSequence_ReferenceSeq.ProtoReflect.Descriptor instead.

func (*MolecularSequence_ReferenceSeq) GetChromosome 

func (x *MolecularSequence_ReferenceSeq) GetChromosome() *datatypes_go_proto.CodeableConcept

func (*MolecularSequence_ReferenceSeq) GetExtension 

func (x *MolecularSequence_ReferenceSeq) GetExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_ReferenceSeq) GetGenomeBuild 

func (x *MolecularSequence_ReferenceSeq) GetGenomeBuild() *datatypes_go_proto.String

func (*MolecularSequence_ReferenceSeq) GetId 

func (x *MolecularSequence_ReferenceSeq) GetId() *datatypes_go_proto.Id

func (*MolecularSequence_ReferenceSeq) GetModifierExtension 

func (x *MolecularSequence_ReferenceSeq) GetModifierExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_ReferenceSeq) GetOrientation 

func (x *MolecularSequence_ReferenceSeq) GetOrientation() *MolecularSequence_ReferenceSeq_OrientationCode

func (*MolecularSequence_ReferenceSeq) GetReferenceSeqId 

func (x *MolecularSequence_ReferenceSeq) GetReferenceSeqId() *datatypes_go_proto.CodeableConcept

func (*MolecularSequence_ReferenceSeq) GetReferenceSeqPointer 

func (x *MolecularSequence_ReferenceSeq) GetReferenceSeqPointer() *datatypes_go_proto.Reference

func (*MolecularSequence_ReferenceSeq) GetReferenceSeqString 

func (x *MolecularSequence_ReferenceSeq) GetReferenceSeqString() *datatypes_go_proto.String

func (*MolecularSequence_ReferenceSeq) GetStrand 

func (x *MolecularSequence_ReferenceSeq) GetStrand() *MolecularSequence_ReferenceSeq_StrandCode

func (*MolecularSequence_ReferenceSeq) GetWindowEnd 

func (x *MolecularSequence_ReferenceSeq) GetWindowEnd() *datatypes_go_proto.Integer

func (*MolecularSequence_ReferenceSeq) GetWindowStart 

func (x *MolecularSequence_ReferenceSeq) GetWindowStart() *datatypes_go_proto.Integer

func (*MolecularSequence_ReferenceSeq) ProtoMessage 

func (*MolecularSequence_ReferenceSeq) ProtoMessage()

func (*MolecularSequence_ReferenceSeq) ProtoReflect 

func (x *MolecularSequence_ReferenceSeq) ProtoReflect() protoreflect.Message

func (*MolecularSequence_ReferenceSeq) Reset 

func (x *MolecularSequence_ReferenceSeq) Reset()

func (*MolecularSequence_ReferenceSeq) String 

func (x *MolecularSequence_ReferenceSeq) String() string

type MolecularSequence_ReferenceSeq_OrientationCode 

type MolecularSequence_ReferenceSeq_OrientationCode struct {
	Value     codes_go_proto.OrientationTypeCode_Value `protobuf:"varint,1,opt,name=value,proto3,enum=google.fhir.r5.core.OrientationTypeCode_Value" json:"value,omitempty"`
	Id        *datatypes_go_proto.String               `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
	Extension []*datatypes_go_proto.Extension          `protobuf:"bytes,3,rep,name=extension,proto3" json:"extension,omitempty"`
	// contains filtered or unexported fields
}

sense | antisense

func (*MolecularSequence_ReferenceSeq_OrientationCode) Descriptor deprecated 

func (*MolecularSequence_ReferenceSeq_OrientationCode) Descriptor() ([]byte, []int)

Deprecated: Use MolecularSequence_ReferenceSeq_OrientationCode.ProtoReflect.Descriptor instead.

func (*MolecularSequence_ReferenceSeq_OrientationCode) GetExtension 

func (x *MolecularSequence_ReferenceSeq_OrientationCode) GetExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_ReferenceSeq_OrientationCode) GetId 

func (x *MolecularSequence_ReferenceSeq_OrientationCode) GetId() *datatypes_go_proto.String

func (*MolecularSequence_ReferenceSeq_OrientationCode) GetValue 

func (x *MolecularSequence_ReferenceSeq_OrientationCode) GetValue() codes_go_proto.OrientationTypeCode_Value

func (*MolecularSequence_ReferenceSeq_OrientationCode) ProtoMessage 

func (*MolecularSequence_ReferenceSeq_OrientationCode) ProtoMessage()

func (*MolecularSequence_ReferenceSeq_OrientationCode) ProtoReflect 

func (x *MolecularSequence_ReferenceSeq_OrientationCode) ProtoReflect() protoreflect.Message

func (*MolecularSequence_ReferenceSeq_OrientationCode) Reset 

func (x *MolecularSequence_ReferenceSeq_OrientationCode) Reset()

func (*MolecularSequence_ReferenceSeq_OrientationCode) String 

func (x *MolecularSequence_ReferenceSeq_OrientationCode) String() string

type MolecularSequence_ReferenceSeq_StrandCode 

type MolecularSequence_ReferenceSeq_StrandCode struct {
	Value     codes_go_proto.StrandTypeCode_Value `protobuf:"varint,1,opt,name=value,proto3,enum=google.fhir.r5.core.StrandTypeCode_Value" json:"value,omitempty"`
	Id        *datatypes_go_proto.String          `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
	Extension []*datatypes_go_proto.Extension     `protobuf:"bytes,3,rep,name=extension,proto3" json:"extension,omitempty"`
	// contains filtered or unexported fields
}

watson | crick

func (*MolecularSequence_ReferenceSeq_StrandCode) Descriptor deprecated 

func (*MolecularSequence_ReferenceSeq_StrandCode) Descriptor() ([]byte, []int)

Deprecated: Use MolecularSequence_ReferenceSeq_StrandCode.ProtoReflect.Descriptor instead.

func (*MolecularSequence_ReferenceSeq_StrandCode) GetExtension 

func (x *MolecularSequence_ReferenceSeq_StrandCode) GetExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_ReferenceSeq_StrandCode) GetId 

func (x *MolecularSequence_ReferenceSeq_StrandCode) GetId() *datatypes_go_proto.String

func (*MolecularSequence_ReferenceSeq_StrandCode) GetValue 

func (x *MolecularSequence_ReferenceSeq_StrandCode) GetValue() codes_go_proto.StrandTypeCode_Value

func (*MolecularSequence_ReferenceSeq_StrandCode) ProtoMessage 

func (*MolecularSequence_ReferenceSeq_StrandCode) ProtoMessage()

func (*MolecularSequence_ReferenceSeq_StrandCode) ProtoReflect 

func (x *MolecularSequence_ReferenceSeq_StrandCode) ProtoReflect() protoreflect.Message

func (*MolecularSequence_ReferenceSeq_StrandCode) Reset 

func (x *MolecularSequence_ReferenceSeq_StrandCode) Reset()

func (*MolecularSequence_ReferenceSeq_StrandCode) String 

func (x *MolecularSequence_ReferenceSeq_StrandCode) String() string

type MolecularSequence_Repository 

type MolecularSequence_Repository struct {

	// Unique id for inter-element referencing
	Id *datatypes_go_proto.Id `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// Additional content defined by implementations
	Extension []*datatypes_go_proto.Extension `protobuf:"bytes,2,rep,name=extension,proto3" json:"extension,omitempty"`
	// Extensions that cannot be ignored even if unrecognized
	ModifierExtension []*datatypes_go_proto.Extension        `protobuf:"bytes,3,rep,name=modifier_extension,json=modifierExtension,proto3" json:"modifier_extension,omitempty"`
	Type              *MolecularSequence_Repository_TypeCode `protobuf:"bytes,4,opt,name=type,proto3" json:"type,omitempty"`
	// URI of the repository
	Url *datatypes_go_proto.Uri `protobuf:"bytes,5,opt,name=url,proto3" json:"url,omitempty"`
	// Repository's name
	Name *datatypes_go_proto.String `protobuf:"bytes,6,opt,name=name,proto3" json:"name,omitempty"`
	// Id of the dataset that used to call for dataset in repository
	DatasetId *datatypes_go_proto.String `protobuf:"bytes,7,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
	// Id of the variantset that used to call for variantset in repository
	VariantsetId *datatypes_go_proto.String `protobuf:"bytes,8,opt,name=variantset_id,json=variantsetId,proto3" json:"variantset_id,omitempty"`
	// Id of the read
	ReadsetId *datatypes_go_proto.String `protobuf:"bytes,9,opt,name=readset_id,json=readsetId,proto3" json:"readset_id,omitempty"`
	// contains filtered or unexported fields
}

External repository which contains detailed report related with observedSeq in this resource

func (*MolecularSequence_Repository) Descriptor deprecated 

func (*MolecularSequence_Repository) Descriptor() ([]byte, []int)

Deprecated: Use MolecularSequence_Repository.ProtoReflect.Descriptor instead.

func (*MolecularSequence_Repository) GetDatasetId 

func (x *MolecularSequence_Repository) GetDatasetId() *datatypes_go_proto.String

func (*MolecularSequence_Repository) GetExtension 

func (x *MolecularSequence_Repository) GetExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_Repository) GetId 

func (x *MolecularSequence_Repository) GetId() *datatypes_go_proto.Id

func (*MolecularSequence_Repository) GetModifierExtension 

func (x *MolecularSequence_Repository) GetModifierExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_Repository) GetName 

func (x *MolecularSequence_Repository) GetName() *datatypes_go_proto.String

func (*MolecularSequence_Repository) GetReadsetId 

func (x *MolecularSequence_Repository) GetReadsetId() *datatypes_go_proto.String

func (*MolecularSequence_Repository) GetType 

func (x *MolecularSequence_Repository) GetType() *MolecularSequence_Repository_TypeCode

func (*MolecularSequence_Repository) GetUrl 

func (x *MolecularSequence_Repository) GetUrl() *datatypes_go_proto.Uri

func (*MolecularSequence_Repository) GetVariantsetId 

func (x *MolecularSequence_Repository) GetVariantsetId() *datatypes_go_proto.String

func (*MolecularSequence_Repository) ProtoMessage 

func (*MolecularSequence_Repository) ProtoMessage()

func (*MolecularSequence_Repository) ProtoReflect 

func (x *MolecularSequence_Repository) ProtoReflect() protoreflect.Message

func (*MolecularSequence_Repository) Reset 

func (x *MolecularSequence_Repository) Reset()

func (*MolecularSequence_Repository) String 

func (x *MolecularSequence_Repository) String() string

type MolecularSequence_Repository_TypeCode 

type MolecularSequence_Repository_TypeCode struct {
	Value     codes_go_proto.RepositoryTypeCode_Value `protobuf:"varint,1,opt,name=value,proto3,enum=google.fhir.r5.core.RepositoryTypeCode_Value" json:"value,omitempty"`
	Id        *datatypes_go_proto.String              `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
	Extension []*datatypes_go_proto.Extension         `protobuf:"bytes,3,rep,name=extension,proto3" json:"extension,omitempty"`
	// contains filtered or unexported fields
}

directlink | openapi | login | oauth | other

func (*MolecularSequence_Repository_TypeCode) Descriptor deprecated 

func (*MolecularSequence_Repository_TypeCode) Descriptor() ([]byte, []int)

Deprecated: Use MolecularSequence_Repository_TypeCode.ProtoReflect.Descriptor instead.

func (*MolecularSequence_Repository_TypeCode) GetExtension 

func (x *MolecularSequence_Repository_TypeCode) GetExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_Repository_TypeCode) GetId 

func (x *MolecularSequence_Repository_TypeCode) GetId() *datatypes_go_proto.String

func (*MolecularSequence_Repository_TypeCode) GetValue 

func (x *MolecularSequence_Repository_TypeCode) GetValue() codes_go_proto.RepositoryTypeCode_Value

func (*MolecularSequence_Repository_TypeCode) ProtoMessage 

func (*MolecularSequence_Repository_TypeCode) ProtoMessage()

func (*MolecularSequence_Repository_TypeCode) ProtoReflect 

func (x *MolecularSequence_Repository_TypeCode) ProtoReflect() protoreflect.Message

func (*MolecularSequence_Repository_TypeCode) Reset 

func (x *MolecularSequence_Repository_TypeCode) Reset()

func (*MolecularSequence_Repository_TypeCode) String 

func (x *MolecularSequence_Repository_TypeCode) String() string

type MolecularSequence_StructureVariant 

type MolecularSequence_StructureVariant struct {

	// Unique id for inter-element referencing
	Id *datatypes_go_proto.Id `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// Additional content defined by implementations
	Extension []*datatypes_go_proto.Extension `protobuf:"bytes,2,rep,name=extension,proto3" json:"extension,omitempty"`
	// Extensions that cannot be ignored even if unrecognized
	ModifierExtension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=modifier_extension,json=modifierExtension,proto3" json:"modifier_extension,omitempty"`
	// Structural variant change type
	VariantType *datatypes_go_proto.CodeableConcept `protobuf:"bytes,4,opt,name=variant_type,json=variantType,proto3" json:"variant_type,omitempty"`
	// Does the structural variant have base pair resolution breakpoints?
	Exact *datatypes_go_proto.Boolean `protobuf:"bytes,5,opt,name=exact,proto3" json:"exact,omitempty"`
	// Structural variant length
	Length *datatypes_go_proto.Integer               `protobuf:"bytes,6,opt,name=length,proto3" json:"length,omitempty"`
	Outer  *MolecularSequence_StructureVariant_Outer `protobuf:"bytes,7,opt,name=outer,proto3" json:"outer,omitempty"`
	Inner  *MolecularSequence_StructureVariant_Inner `protobuf:"bytes,8,opt,name=inner,proto3" json:"inner,omitempty"`
	// contains filtered or unexported fields
}

Structural variant

func (*MolecularSequence_StructureVariant) Descriptor deprecated 

func (*MolecularSequence_StructureVariant) Descriptor() ([]byte, []int)

Deprecated: Use MolecularSequence_StructureVariant.ProtoReflect.Descriptor instead.

func (*MolecularSequence_StructureVariant) GetExact 

func (x *MolecularSequence_StructureVariant) GetExact() *datatypes_go_proto.Boolean

func (*MolecularSequence_StructureVariant) GetExtension 

func (x *MolecularSequence_StructureVariant) GetExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_StructureVariant) GetId 

func (x *MolecularSequence_StructureVariant) GetId() *datatypes_go_proto.Id

func (*MolecularSequence_StructureVariant) GetInner 

func (x *MolecularSequence_StructureVariant) GetInner() *MolecularSequence_StructureVariant_Inner

func (*MolecularSequence_StructureVariant) GetLength 

func (x *MolecularSequence_StructureVariant) GetLength() *datatypes_go_proto.Integer

func (*MolecularSequence_StructureVariant) GetModifierExtension 

func (x *MolecularSequence_StructureVariant) GetModifierExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_StructureVariant) GetOuter 

func (x *MolecularSequence_StructureVariant) GetOuter() *MolecularSequence_StructureVariant_Outer

func (*MolecularSequence_StructureVariant) GetVariantType 

func (x *MolecularSequence_StructureVariant) GetVariantType() *datatypes_go_proto.CodeableConcept

func (*MolecularSequence_StructureVariant) ProtoMessage 

func (*MolecularSequence_StructureVariant) ProtoMessage()

func (*MolecularSequence_StructureVariant) ProtoReflect 

func (x *MolecularSequence_StructureVariant) ProtoReflect() protoreflect.Message

func (*MolecularSequence_StructureVariant) Reset 

func (x *MolecularSequence_StructureVariant) Reset()

func (*MolecularSequence_StructureVariant) String 

func (x *MolecularSequence_StructureVariant) String() string

type MolecularSequence_StructureVariant_Inner 

type MolecularSequence_StructureVariant_Inner struct {

	// Unique id for inter-element referencing
	Id *datatypes_go_proto.Id `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// Additional content defined by implementations
	Extension []*datatypes_go_proto.Extension `protobuf:"bytes,2,rep,name=extension,proto3" json:"extension,omitempty"`
	// Extensions that cannot be ignored even if unrecognized
	ModifierExtension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=modifier_extension,json=modifierExtension,proto3" json:"modifier_extension,omitempty"`
	// Structural variant inner start
	Start *datatypes_go_proto.Integer `protobuf:"bytes,4,opt,name=start,proto3" json:"start,omitempty"`
	// Structural variant inner end
	End *datatypes_go_proto.Integer `protobuf:"bytes,5,opt,name=end,proto3" json:"end,omitempty"`
	// contains filtered or unexported fields
}

Structural variant inner

func (*MolecularSequence_StructureVariant_Inner) Descriptor deprecated 

func (*MolecularSequence_StructureVariant_Inner) Descriptor() ([]byte, []int)

Deprecated: Use MolecularSequence_StructureVariant_Inner.ProtoReflect.Descriptor instead.

func (*MolecularSequence_StructureVariant_Inner) GetEnd 

func (x *MolecularSequence_StructureVariant_Inner) GetEnd() *datatypes_go_proto.Integer

func (*MolecularSequence_StructureVariant_Inner) GetExtension 

func (x *MolecularSequence_StructureVariant_Inner) GetExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_StructureVariant_Inner) GetId 

func (x *MolecularSequence_StructureVariant_Inner) GetId() *datatypes_go_proto.Id

func (*MolecularSequence_StructureVariant_Inner) GetModifierExtension 

func (x *MolecularSequence_StructureVariant_Inner) GetModifierExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_StructureVariant_Inner) GetStart 

func (x *MolecularSequence_StructureVariant_Inner) GetStart() *datatypes_go_proto.Integer

func (*MolecularSequence_StructureVariant_Inner) ProtoMessage 

func (*MolecularSequence_StructureVariant_Inner) ProtoMessage()

func (*MolecularSequence_StructureVariant_Inner) ProtoReflect 

func (x *MolecularSequence_StructureVariant_Inner) ProtoReflect() protoreflect.Message

func (*MolecularSequence_StructureVariant_Inner) Reset 

func (x *MolecularSequence_StructureVariant_Inner) Reset()

func (*MolecularSequence_StructureVariant_Inner) String 

func (x *MolecularSequence_StructureVariant_Inner) String() string

type MolecularSequence_StructureVariant_Outer 

type MolecularSequence_StructureVariant_Outer struct {

	// Unique id for inter-element referencing
	Id *datatypes_go_proto.Id `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// Additional content defined by implementations
	Extension []*datatypes_go_proto.Extension `protobuf:"bytes,2,rep,name=extension,proto3" json:"extension,omitempty"`
	// Extensions that cannot be ignored even if unrecognized
	ModifierExtension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=modifier_extension,json=modifierExtension,proto3" json:"modifier_extension,omitempty"`
	// Structural variant outer start
	Start *datatypes_go_proto.Integer `protobuf:"bytes,4,opt,name=start,proto3" json:"start,omitempty"`
	// Structural variant outer end
	End *datatypes_go_proto.Integer `protobuf:"bytes,5,opt,name=end,proto3" json:"end,omitempty"`
	// contains filtered or unexported fields
}

Structural variant outer

func (*MolecularSequence_StructureVariant_Outer) Descriptor deprecated 

func (*MolecularSequence_StructureVariant_Outer) Descriptor() ([]byte, []int)

Deprecated: Use MolecularSequence_StructureVariant_Outer.ProtoReflect.Descriptor instead.

func (*MolecularSequence_StructureVariant_Outer) GetEnd 

func (x *MolecularSequence_StructureVariant_Outer) GetEnd() *datatypes_go_proto.Integer

func (*MolecularSequence_StructureVariant_Outer) GetExtension 

func (x *MolecularSequence_StructureVariant_Outer) GetExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_StructureVariant_Outer) GetId 

func (x *MolecularSequence_StructureVariant_Outer) GetId() *datatypes_go_proto.Id

func (*MolecularSequence_StructureVariant_Outer) GetModifierExtension 

func (x *MolecularSequence_StructureVariant_Outer) GetModifierExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_StructureVariant_Outer) GetStart 

func (x *MolecularSequence_StructureVariant_Outer) GetStart() *datatypes_go_proto.Integer

func (*MolecularSequence_StructureVariant_Outer) ProtoMessage 

func (*MolecularSequence_StructureVariant_Outer) ProtoMessage()

func (*MolecularSequence_StructureVariant_Outer) ProtoReflect 

func (x *MolecularSequence_StructureVariant_Outer) ProtoReflect() protoreflect.Message

func (*MolecularSequence_StructureVariant_Outer) Reset 

func (x *MolecularSequence_StructureVariant_Outer) Reset()

func (*MolecularSequence_StructureVariant_Outer) String 

func (x *MolecularSequence_StructureVariant_Outer) String() string

type MolecularSequence_TypeCode 

type MolecularSequence_TypeCode struct {
	Value     codes_go_proto.SequenceTypeCode_Value `protobuf:"varint,1,opt,name=value,proto3,enum=google.fhir.r5.core.SequenceTypeCode_Value" json:"value,omitempty"`
	Id        *datatypes_go_proto.String            `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
	Extension []*datatypes_go_proto.Extension       `protobuf:"bytes,3,rep,name=extension,proto3" json:"extension,omitempty"`
	// contains filtered or unexported fields
}

aa | dna | rna

func (*MolecularSequence_TypeCode) Descriptor deprecated 

func (*MolecularSequence_TypeCode) Descriptor() ([]byte, []int)

Deprecated: Use MolecularSequence_TypeCode.ProtoReflect.Descriptor instead.

func (*MolecularSequence_TypeCode) GetExtension 

func (x *MolecularSequence_TypeCode) GetExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_TypeCode) GetId 

func (x *MolecularSequence_TypeCode) GetId() *datatypes_go_proto.String

func (*MolecularSequence_TypeCode) GetValue 

func (x *MolecularSequence_TypeCode) GetValue() codes_go_proto.SequenceTypeCode_Value

func (*MolecularSequence_TypeCode) ProtoMessage 

func (*MolecularSequence_TypeCode) ProtoMessage()

func (*MolecularSequence_TypeCode) ProtoReflect 

func (x *MolecularSequence_TypeCode) ProtoReflect() protoreflect.Message

func (*MolecularSequence_TypeCode) Reset 

func (x *MolecularSequence_TypeCode) Reset()

func (*MolecularSequence_TypeCode) String 

func (x *MolecularSequence_TypeCode) String() string

type MolecularSequence_Variant 

type MolecularSequence_Variant struct {

	// Unique id for inter-element referencing
	Id *datatypes_go_proto.Id `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// Additional content defined by implementations
	Extension []*datatypes_go_proto.Extension `protobuf:"bytes,2,rep,name=extension,proto3" json:"extension,omitempty"`
	// Extensions that cannot be ignored even if unrecognized
	ModifierExtension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=modifier_extension,json=modifierExtension,proto3" json:"modifier_extension,omitempty"`
	// Start position of the variant on the  reference sequence
	Start *datatypes_go_proto.Integer `protobuf:"bytes,4,opt,name=start,proto3" json:"start,omitempty"`
	// End position of the variant on the reference sequence
	End *datatypes_go_proto.Integer `protobuf:"bytes,5,opt,name=end,proto3" json:"end,omitempty"`
	// Allele that was observed
	ObservedAllele *datatypes_go_proto.String `protobuf:"bytes,6,opt,name=observed_allele,json=observedAllele,proto3" json:"observed_allele,omitempty"`
	// Allele in the reference sequence
	ReferenceAllele *datatypes_go_proto.String `protobuf:"bytes,7,opt,name=reference_allele,json=referenceAllele,proto3" json:"reference_allele,omitempty"`
	// Extended CIGAR string for aligning the sequence with reference bases
	Cigar *datatypes_go_proto.String `protobuf:"bytes,8,opt,name=cigar,proto3" json:"cigar,omitempty"`
	// Pointer to observed variant information
	VariantPointer *datatypes_go_proto.Reference `protobuf:"bytes,9,opt,name=variant_pointer,json=variantPointer,proto3" json:"variant_pointer,omitempty"`
	// contains filtered or unexported fields
}

Variant in sequence

func (*MolecularSequence_Variant) Descriptor deprecated 

func (*MolecularSequence_Variant) Descriptor() ([]byte, []int)

Deprecated: Use MolecularSequence_Variant.ProtoReflect.Descriptor instead.

func (*MolecularSequence_Variant) GetCigar 

func (x *MolecularSequence_Variant) GetCigar() *datatypes_go_proto.String

func (*MolecularSequence_Variant) GetEnd 

func (x *MolecularSequence_Variant) GetEnd() *datatypes_go_proto.Integer

func (*MolecularSequence_Variant) GetExtension 

func (x *MolecularSequence_Variant) GetExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_Variant) GetId 

func (x *MolecularSequence_Variant) GetId() *datatypes_go_proto.Id

func (*MolecularSequence_Variant) GetModifierExtension 

func (x *MolecularSequence_Variant) GetModifierExtension() []*datatypes_go_proto.Extension

func (*MolecularSequence_Variant) GetObservedAllele 

func (x *MolecularSequence_Variant) GetObservedAllele() *datatypes_go_proto.String

func (*MolecularSequence_Variant) GetReferenceAllele 

func (x *MolecularSequence_Variant) GetReferenceAllele() *datatypes_go_proto.String

func (*MolecularSequence_Variant) GetStart 

func (x *MolecularSequence_Variant) GetStart() *datatypes_go_proto.Integer

func (*MolecularSequence_Variant) GetVariantPointer 

func (x *MolecularSequence_Variant) GetVariantPointer() *datatypes_go_proto.Reference

func (*MolecularSequence_Variant) ProtoMessage 

func (*MolecularSequence_Variant) ProtoMessage()

func (*MolecularSequence_Variant) ProtoReflect 

func (x *MolecularSequence_Variant) ProtoReflect() protoreflect.Message

func (*MolecularSequence_Variant) Reset 

func (x *MolecularSequence_Variant) Reset()

func (*MolecularSequence_Variant) String 

func (x *MolecularSequence_Variant) String() string

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