genomics

package
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 Go to latest Published: Nov 7, 2018 License: Apache-2.0 Imports: 15 Imported by: 0

Documentation

Index

Constants

This section is empty.

Variables

View Source 
var AnnotationType_name = map[int32]string{
	0: "ANNOTATION_TYPE_UNSPECIFIED",
	1: "GENERIC",
	2: "VARIANT",
	3: "GENE",
	4: "TRANSCRIPT",
}
View Source 
var AnnotationType_value = map[string]int32{
	"ANNOTATION_TYPE_UNSPECIFIED": 0,
	"GENERIC":                     1,
	"VARIANT":                     2,
	"GENE":                        3,
	"TRANSCRIPT":                  4,
}
View Source 
var CigarUnit_Operation_name = map[int32]string{
	0: "OPERATION_UNSPECIFIED",
	1: "ALIGNMENT_MATCH",
	2: "INSERT",
	3: "DELETE",
	4: "SKIP",
	5: "CLIP_SOFT",
	6: "CLIP_HARD",
	7: "PAD",
	8: "SEQUENCE_MATCH",
	9: "SEQUENCE_MISMATCH",
}
View Source 
var CigarUnit_Operation_value = map[string]int32{
	"OPERATION_UNSPECIFIED": 0,
	"ALIGNMENT_MATCH":       1,
	"INSERT":                2,
	"DELETE":                3,
	"SKIP":                  4,
	"CLIP_SOFT":             5,
	"CLIP_HARD":             6,
	"PAD":                   7,
	"SEQUENCE_MATCH":        8,
	"SEQUENCE_MISMATCH":     9,
}
View Source 
var ExportVariantSetRequest_Format_name = map[int32]string{
	0: "FORMAT_UNSPECIFIED",
	1: "FORMAT_BIGQUERY",
}
View Source 
var ExportVariantSetRequest_Format_value = map[string]int32{
	"FORMAT_UNSPECIFIED": 0,
	"FORMAT_BIGQUERY":    1,
}
View Source 
var ImportReadGroupSetsRequest_PartitionStrategy_name = map[int32]string{
	0: "PARTITION_STRATEGY_UNSPECIFIED",
	1: "PER_FILE_PER_SAMPLE",
	2: "MERGE_ALL",
}
View Source 
var ImportReadGroupSetsRequest_PartitionStrategy_value = map[string]int32{
	"PARTITION_STRATEGY_UNSPECIFIED": 0,
	"PER_FILE_PER_SAMPLE":            1,
	"MERGE_ALL":                      2,
}
View Source 
var ImportVariantsRequest_Format_name = map[int32]string{
	0: "FORMAT_UNSPECIFIED",
	1: "FORMAT_VCF",
	2: "FORMAT_COMPLETE_GENOMICS",
}
View Source 
var ImportVariantsRequest_Format_value = map[string]int32{
	"FORMAT_UNSPECIFIED":       0,
	"FORMAT_VCF":               1,
	"FORMAT_COMPLETE_GENOMICS": 2,
}
View Source 
var InfoMergeOperation_name = map[int32]string{
	0: "INFO_MERGE_OPERATION_UNSPECIFIED",
	1: "IGNORE_NEW",
	2: "MOVE_TO_CALLS",
}
View Source 
var InfoMergeOperation_value = map[string]int32{
	"INFO_MERGE_OPERATION_UNSPECIFIED": 0,
	"IGNORE_NEW":                       1,
	"MOVE_TO_CALLS":                    2,
}
View Source 
var VariantAnnotation_ClinicalSignificance_name = map[int32]string{
	0:  "CLINICAL_SIGNIFICANCE_UNSPECIFIED",
	1:  "CLINICAL_SIGNIFICANCE_OTHER",
	2:  "UNCERTAIN",
	3:  "BENIGN",
	4:  "LIKELY_BENIGN",
	5:  "LIKELY_PATHOGENIC",
	6:  "PATHOGENIC",
	7:  "DRUG_RESPONSE",
	8:  "HISTOCOMPATIBILITY",
	9:  "CONFERS_SENSITIVITY",
	10: "RISK_FACTOR",
	11: "ASSOCIATION",
	12: "PROTECTIVE",
	13: "MULTIPLE_REPORTED",
}
View Source 
var VariantAnnotation_ClinicalSignificance_value = map[string]int32{
	"CLINICAL_SIGNIFICANCE_UNSPECIFIED": 0,
	"CLINICAL_SIGNIFICANCE_OTHER":       1,
	"UNCERTAIN":                         2,
	"BENIGN":                            3,
	"LIKELY_BENIGN":                     4,
	"LIKELY_PATHOGENIC":                 5,
	"PATHOGENIC":                        6,
	"DRUG_RESPONSE":                     7,
	"HISTOCOMPATIBILITY":                8,
	"CONFERS_SENSITIVITY":               9,
	"RISK_FACTOR":                       10,
	"ASSOCIATION":                       11,
	"PROTECTIVE":                        12,
	"MULTIPLE_REPORTED":                 13,
}
View Source 
var VariantAnnotation_Effect_name = map[int32]string{
	0: "EFFECT_UNSPECIFIED",
	1: "EFFECT_OTHER",
	2: "FRAMESHIFT",
	3: "FRAME_PRESERVING_INDEL",
	4: "SYNONYMOUS_SNP",
	5: "NONSYNONYMOUS_SNP",
	6: "STOP_GAIN",
	7: "STOP_LOSS",
	8: "SPLICE_SITE_DISRUPTION",
}
View Source 
var VariantAnnotation_Effect_value = map[string]int32{
	"EFFECT_UNSPECIFIED":     0,
	"EFFECT_OTHER":           1,
	"FRAMESHIFT":             2,
	"FRAME_PRESERVING_INDEL": 3,
	"SYNONYMOUS_SNP":         4,
	"NONSYNONYMOUS_SNP":      5,
	"STOP_GAIN":              6,
	"STOP_LOSS":              7,
	"SPLICE_SITE_DISRUPTION": 8,
}
View Source 
var VariantAnnotation_Type_name = map[int32]string{
	0: "TYPE_UNSPECIFIED",
	1: "TYPE_OTHER",
	2: "INSERTION",
	3: "DELETION",
	4: "SUBSTITUTION",
	5: "SNP",
	6: "STRUCTURAL",
	7: "CNV",
}
View Source 
var VariantAnnotation_Type_value = map[string]int32{
	"TYPE_UNSPECIFIED": 0,
	"TYPE_OTHER":       1,
	"INSERTION":        2,
	"DELETION":         3,
	"SUBSTITUTION":     4,
	"SNP":              5,
	"STRUCTURAL":       6,
	"CNV":              7,
}
View Source 
var VariantSetMetadata_Type_name = map[int32]string{
	0: "TYPE_UNSPECIFIED",
	1: "INTEGER",
	2: "FLOAT",
	3: "FLAG",
	4: "CHARACTER",
	5: "STRING",
}
View Source 
var VariantSetMetadata_Type_value = map[string]int32{
	"TYPE_UNSPECIFIED": 0,
	"INTEGER":          1,
	"FLOAT":            2,
	"FLAG":             3,
	"CHARACTER":        4,
	"STRING":           5,
}

Functions

func RegisterAnnotationServiceV1Server 

func RegisterAnnotationServiceV1Server(s *grpc.Server, srv AnnotationServiceV1Server)

func RegisterDatasetServiceV1Server 

func RegisterDatasetServiceV1Server(s *grpc.Server, srv DatasetServiceV1Server)

func RegisterReadServiceV1Server 

func RegisterReadServiceV1Server(s *grpc.Server, srv ReadServiceV1Server)

func RegisterReferenceServiceV1Server 

func RegisterReferenceServiceV1Server(s *grpc.Server, srv ReferenceServiceV1Server)

func RegisterStreamingReadServiceServer 

func RegisterStreamingReadServiceServer(s *grpc.Server, srv StreamingReadServiceServer)

func RegisterStreamingVariantServiceServer 

func RegisterStreamingVariantServiceServer(s *grpc.Server, srv StreamingVariantServiceServer)

func RegisterVariantServiceV1Server 

func RegisterVariantServiceV1Server(s *grpc.Server, srv VariantServiceV1Server)

Types

type Annotation 

type Annotation struct {
	// The server-generated annotation ID, unique across all annotations.
	Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// The annotation set to which this annotation belongs.
	AnnotationSetId string `protobuf:"bytes,2,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
	// The display name of this annotation.
	Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
	// The ID of the Google Genomics reference associated with this range.
	ReferenceId string `protobuf:"bytes,4,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
	// The display name corresponding to the reference specified by
	// `referenceId`, for example `chr1`, `1`, or `chrX`.
	ReferenceName string `protobuf:"bytes,5,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
	// The start position of the range on the reference, 0-based inclusive.
	Start int64 `protobuf:"varint,6,opt,name=start,proto3" json:"start,omitempty"`
	// The end position of the range on the reference, 0-based exclusive.
	End int64 `protobuf:"varint,7,opt,name=end,proto3" json:"end,omitempty"`
	// Whether this range refers to the reverse strand, as opposed to the forward
	// strand. Note that regardless of this field, the start/end position of the
	// range always refer to the forward strand.
	ReverseStrand bool `protobuf:"varint,8,opt,name=reverse_strand,json=reverseStrand,proto3" json:"reverse_strand,omitempty"`
	// The data type for this annotation. Must match the containing annotation
	// set's type.
	Type AnnotationType `protobuf:"varint,9,opt,name=type,proto3,enum=google.genomics.v1.AnnotationType" json:"type,omitempty"`
	// Types that are valid to be assigned to Value:
	//	*Annotation_Variant
	//	*Annotation_Transcript
	Value isAnnotation_Value `protobuf_oneof:"value"`
	// A map of additional read alignment information. This must be of the form
	// map<string, string[]> (string key mapping to a list of string values).
	Info                 map[string]*_struct.ListValue `` /* 150-byte string literal not displayed */
	XXX_NoUnkeyedLiteral struct{}                      `json:"-"`
	XXX_unrecognized     []byte                        `json:"-"`
	XXX_sizecache        int32                         `json:"-"`
}

An annotation describes a region of reference genome. The value of an annotation may be one of several canonical types, supplemented by arbitrary info tags. An annotation is not inherently associated with a specific sample or individual (though a client could choose to use annotations in this way). Example canonical annotation types are `GENE` and `VARIANT`.

func (*Annotation) Descriptor 

func (*Annotation) Descriptor() ([]byte, []int)

func (*Annotation) GetAnnotationSetId 

func (m *Annotation) GetAnnotationSetId() string

func (*Annotation) GetEnd 

func (m *Annotation) GetEnd() int64

func (*Annotation) GetId 

func (m *Annotation) GetId() string

func (*Annotation) GetInfo 

func (m *Annotation) GetInfo() map[string]*_struct.ListValue

func (*Annotation) GetName 

func (m *Annotation) GetName() string

func (*Annotation) GetReferenceId 

func (m *Annotation) GetReferenceId() string

func (*Annotation) GetReferenceName 

func (m *Annotation) GetReferenceName() string

func (*Annotation) GetReverseStrand 

func (m *Annotation) GetReverseStrand() bool

func (*Annotation) GetStart 

func (m *Annotation) GetStart() int64

func (*Annotation) GetTranscript 

func (m *Annotation) GetTranscript() *Transcript

func (*Annotation) GetType 

func (m *Annotation) GetType() AnnotationType

func (*Annotation) GetValue 

func (m *Annotation) GetValue() isAnnotation_Value

func (*Annotation) GetVariant 

func (m *Annotation) GetVariant() *VariantAnnotation

func (*Annotation) ProtoMessage 

func (*Annotation) ProtoMessage()

func (*Annotation) Reset 

func (m *Annotation) Reset()

func (*Annotation) String 

func (m *Annotation) String() string

func (*Annotation) XXX_DiscardUnknown 

func (m *Annotation) XXX_DiscardUnknown()

func (*Annotation) XXX_Marshal 

func (m *Annotation) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*Annotation) XXX_Merge 

func (m *Annotation) XXX_Merge(src proto.Message)

func (*Annotation) XXX_OneofFuncs 

func (*Annotation) XXX_OneofFuncs() (func(msg proto.Message, b *proto.Buffer) error, func(msg proto.Message, tag, wire int, b *proto.Buffer) (bool, error), func(msg proto.Message) (n int), []interface{})

XXX_OneofFuncs is for the internal use of the proto package.

func (*Annotation) XXX_Size 

func (m *Annotation) XXX_Size() int

func (*Annotation) XXX_Unmarshal 

func (m *Annotation) XXX_Unmarshal(b []byte) error

type AnnotationServiceV1Client 

type AnnotationServiceV1Client interface {
	// Creates a new annotation set. Caller must have WRITE permission for the
	// associated dataset.
	//
	// The following fields are required:
	//
	//   * [datasetId][google.genomics.v1.AnnotationSet.dataset_id]
	//   * [referenceSetId][google.genomics.v1.AnnotationSet.reference_set_id]
	//
	// All other fields may be optionally specified, unless documented as being
	// server-generated (for example, the `id` field).
	CreateAnnotationSet(ctx context.Context, in *CreateAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error)
	// Gets an annotation set. Caller must have READ permission for
	// the associated dataset.
	GetAnnotationSet(ctx context.Context, in *GetAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error)
	// Updates an annotation set. The update must respect all mutability
	// restrictions and other invariants described on the annotation set resource.
	// Caller must have WRITE permission for the associated dataset.
	UpdateAnnotationSet(ctx context.Context, in *UpdateAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error)
	// Deletes an annotation set. Caller must have WRITE permission
	// for the associated annotation set.
	DeleteAnnotationSet(ctx context.Context, in *DeleteAnnotationSetRequest, opts ...grpc.CallOption) (*empty.Empty, error)
	// Searches for annotation sets that match the given criteria. Annotation sets
	// are returned in an unspecified order. This order is consistent, such that
	// two queries for the same content (regardless of page size) yield annotation
	// sets in the same order across their respective streams of paginated
	// responses. Caller must have READ permission for the queried datasets.
	SearchAnnotationSets(ctx context.Context, in *SearchAnnotationSetsRequest, opts ...grpc.CallOption) (*SearchAnnotationSetsResponse, error)
	// Creates a new annotation. Caller must have WRITE permission
	// for the associated annotation set.
	//
	// The following fields are required:
	//
	// * [annotationSetId][google.genomics.v1.Annotation.annotation_set_id]
	// * [referenceName][google.genomics.v1.Annotation.reference_name] or
	//   [referenceId][google.genomics.v1.Annotation.reference_id]
	//
	// ### Transcripts
	//
	// For annotations of type TRANSCRIPT, the following fields of
	// [transcript][google.genomics.v1.Annotation.transcript] must be provided:
	//
	// * [exons.start][google.genomics.v1.Transcript.Exon.start]
	// * [exons.end][google.genomics.v1.Transcript.Exon.end]
	//
	// All other fields may be optionally specified, unless documented as being
	// server-generated (for example, the `id` field). The annotated
	// range must be no longer than 100Mbp (mega base pairs). See the
	// [Annotation resource][google.genomics.v1.Annotation]
	// for additional restrictions on each field.
	CreateAnnotation(ctx context.Context, in *CreateAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error)
	// Creates one or more new annotations atomically. All annotations must
	// belong to the same annotation set. Caller must have WRITE
	// permission for this annotation set. For optimal performance, batch
	// positionally adjacent annotations together.
	//
	// If the request has a systemic issue, such as an attempt to write to
	// an inaccessible annotation set, the entire RPC will fail accordingly. For
	// lesser data issues, when possible an error will be isolated to the
	// corresponding batch entry in the response; the remaining well formed
	// annotations will be created normally.
	//
	// For details on the requirements for each individual annotation resource,
	// see
	// [CreateAnnotation][google.genomics.v1.AnnotationServiceV1.CreateAnnotation].
	BatchCreateAnnotations(ctx context.Context, in *BatchCreateAnnotationsRequest, opts ...grpc.CallOption) (*BatchCreateAnnotationsResponse, error)
	// Gets an annotation. Caller must have READ permission
	// for the associated annotation set.
	GetAnnotation(ctx context.Context, in *GetAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error)
	// Updates an annotation. Caller must have
	// WRITE permission for the associated dataset.
	UpdateAnnotation(ctx context.Context, in *UpdateAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error)
	// Deletes an annotation. Caller must have WRITE permission for
	// the associated annotation set.
	DeleteAnnotation(ctx context.Context, in *DeleteAnnotationRequest, opts ...grpc.CallOption) (*empty.Empty, error)
	// Searches for annotations that match the given criteria. Results are
	// ordered by genomic coordinate (by reference sequence, then position).
	// Annotations with equivalent genomic coordinates are returned in an
	// unspecified order. This order is consistent, such that two queries for the
	// same content (regardless of page size) yield annotations in the same order
	// across their respective streams of paginated responses. Caller must have
	// READ permission for the queried annotation sets.
	SearchAnnotations(ctx context.Context, in *SearchAnnotationsRequest, opts ...grpc.CallOption) (*SearchAnnotationsResponse, error)
}

AnnotationServiceV1Client is the client API for AnnotationServiceV1 service.

For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.

func NewAnnotationServiceV1Client 

func NewAnnotationServiceV1Client(cc *grpc.ClientConn) AnnotationServiceV1Client

type AnnotationServiceV1Server 

type AnnotationServiceV1Server interface {
	// Creates a new annotation set. Caller must have WRITE permission for the
	// associated dataset.
	//
	// The following fields are required:
	//
	//   * [datasetId][google.genomics.v1.AnnotationSet.dataset_id]
	//   * [referenceSetId][google.genomics.v1.AnnotationSet.reference_set_id]
	//
	// All other fields may be optionally specified, unless documented as being
	// server-generated (for example, the `id` field).
	CreateAnnotationSet(context.Context, *CreateAnnotationSetRequest) (*AnnotationSet, error)
	// Gets an annotation set. Caller must have READ permission for
	// the associated dataset.
	GetAnnotationSet(context.Context, *GetAnnotationSetRequest) (*AnnotationSet, error)
	// Updates an annotation set. The update must respect all mutability
	// restrictions and other invariants described on the annotation set resource.
	// Caller must have WRITE permission for the associated dataset.
	UpdateAnnotationSet(context.Context, *UpdateAnnotationSetRequest) (*AnnotationSet, error)
	// Deletes an annotation set. Caller must have WRITE permission
	// for the associated annotation set.
	DeleteAnnotationSet(context.Context, *DeleteAnnotationSetRequest) (*empty.Empty, error)
	// Searches for annotation sets that match the given criteria. Annotation sets
	// are returned in an unspecified order. This order is consistent, such that
	// two queries for the same content (regardless of page size) yield annotation
	// sets in the same order across their respective streams of paginated
	// responses. Caller must have READ permission for the queried datasets.
	SearchAnnotationSets(context.Context, *SearchAnnotationSetsRequest) (*SearchAnnotationSetsResponse, error)
	// Creates a new annotation. Caller must have WRITE permission
	// for the associated annotation set.
	//
	// The following fields are required:
	//
	// * [annotationSetId][google.genomics.v1.Annotation.annotation_set_id]
	// * [referenceName][google.genomics.v1.Annotation.reference_name] or
	//   [referenceId][google.genomics.v1.Annotation.reference_id]
	//
	// ### Transcripts
	//
	// For annotations of type TRANSCRIPT, the following fields of
	// [transcript][google.genomics.v1.Annotation.transcript] must be provided:
	//
	// * [exons.start][google.genomics.v1.Transcript.Exon.start]
	// * [exons.end][google.genomics.v1.Transcript.Exon.end]
	//
	// All other fields may be optionally specified, unless documented as being
	// server-generated (for example, the `id` field). The annotated
	// range must be no longer than 100Mbp (mega base pairs). See the
	// [Annotation resource][google.genomics.v1.Annotation]
	// for additional restrictions on each field.
	CreateAnnotation(context.Context, *CreateAnnotationRequest) (*Annotation, error)
	// Creates one or more new annotations atomically. All annotations must
	// belong to the same annotation set. Caller must have WRITE
	// permission for this annotation set. For optimal performance, batch
	// positionally adjacent annotations together.
	//
	// If the request has a systemic issue, such as an attempt to write to
	// an inaccessible annotation set, the entire RPC will fail accordingly. For
	// lesser data issues, when possible an error will be isolated to the
	// corresponding batch entry in the response; the remaining well formed
	// annotations will be created normally.
	//
	// For details on the requirements for each individual annotation resource,
	// see
	// [CreateAnnotation][google.genomics.v1.AnnotationServiceV1.CreateAnnotation].
	BatchCreateAnnotations(context.Context, *BatchCreateAnnotationsRequest) (*BatchCreateAnnotationsResponse, error)
	// Gets an annotation. Caller must have READ permission
	// for the associated annotation set.
	GetAnnotation(context.Context, *GetAnnotationRequest) (*Annotation, error)
	// Updates an annotation. Caller must have
	// WRITE permission for the associated dataset.
	UpdateAnnotation(context.Context, *UpdateAnnotationRequest) (*Annotation, error)
	// Deletes an annotation. Caller must have WRITE permission for
	// the associated annotation set.
	DeleteAnnotation(context.Context, *DeleteAnnotationRequest) (*empty.Empty, error)
	// Searches for annotations that match the given criteria. Results are
	// ordered by genomic coordinate (by reference sequence, then position).
	// Annotations with equivalent genomic coordinates are returned in an
	// unspecified order. This order is consistent, such that two queries for the
	// same content (regardless of page size) yield annotations in the same order
	// across their respective streams of paginated responses. Caller must have
	// READ permission for the queried annotation sets.
	SearchAnnotations(context.Context, *SearchAnnotationsRequest) (*SearchAnnotationsResponse, error)
}

AnnotationServiceV1Server is the server API for AnnotationServiceV1 service.

type AnnotationSet 

type AnnotationSet struct {
	// The server-generated annotation set ID, unique across all annotation sets.
	Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// The dataset to which this annotation set belongs.
	DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
	// The ID of the reference set that defines the coordinate space for this
	// set's annotations.
	ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
	// The display name for this annotation set.
	Name string `protobuf:"bytes,4,opt,name=name,proto3" json:"name,omitempty"`
	// The source URI describing the file from which this annotation set was
	// generated, if any.
	SourceUri string `protobuf:"bytes,5,opt,name=source_uri,json=sourceUri,proto3" json:"source_uri,omitempty"`
	// The type of annotations contained within this set.
	Type AnnotationType `protobuf:"varint,6,opt,name=type,proto3,enum=google.genomics.v1.AnnotationType" json:"type,omitempty"`
	// A map of additional read alignment information. This must be of the form
	// map<string, string[]> (string key mapping to a list of string values).
	Info                 map[string]*_struct.ListValue `` /* 150-byte string literal not displayed */
	XXX_NoUnkeyedLiteral struct{}                      `json:"-"`
	XXX_unrecognized     []byte                        `json:"-"`
	XXX_sizecache        int32                         `json:"-"`
}

An annotation set is a logical grouping of annotations that share consistent type information and provenance. Examples of annotation sets include 'all genes from refseq', and 'all variant annotations from ClinVar'.

func (*AnnotationSet) Descriptor 

func (*AnnotationSet) Descriptor() ([]byte, []int)

func (*AnnotationSet) GetDatasetId 

func (m *AnnotationSet) GetDatasetId() string

func (*AnnotationSet) GetId 

func (m *AnnotationSet) GetId() string

func (*AnnotationSet) GetInfo 

func (m *AnnotationSet) GetInfo() map[string]*_struct.ListValue

func (*AnnotationSet) GetName 

func (m *AnnotationSet) GetName() string

func (*AnnotationSet) GetReferenceSetId 

func (m *AnnotationSet) GetReferenceSetId() string

func (*AnnotationSet) GetSourceUri 

func (m *AnnotationSet) GetSourceUri() string

func (*AnnotationSet) GetType 

func (m *AnnotationSet) GetType() AnnotationType

func (*AnnotationSet) ProtoMessage 

func (*AnnotationSet) ProtoMessage()

func (*AnnotationSet) Reset 

func (m *AnnotationSet) Reset()

func (*AnnotationSet) String 

func (m *AnnotationSet) String() string

func (*AnnotationSet) XXX_DiscardUnknown 

func (m *AnnotationSet) XXX_DiscardUnknown()

func (*AnnotationSet) XXX_Marshal 

func (m *AnnotationSet) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*AnnotationSet) XXX_Merge 

func (m *AnnotationSet) XXX_Merge(src proto.Message)

func (*AnnotationSet) XXX_Size 

func (m *AnnotationSet) XXX_Size() int

func (*AnnotationSet) XXX_Unmarshal 

func (m *AnnotationSet) XXX_Unmarshal(b []byte) error

type AnnotationType 

type AnnotationType int32

When an Annotation[google.genomics.v1.Annotation] or AnnotationSet[google.genomics.v1.AnnotationSet] is created, if `type` is not specified it will be set to `GENERIC`. 

const (
	AnnotationType_ANNOTATION_TYPE_UNSPECIFIED AnnotationType = 0
	// A `GENERIC` annotation type should be used when no other annotation
	// type will suffice. This represents an untyped annotation of the reference
	// genome.
	AnnotationType_GENERIC AnnotationType = 1
	// A `VARIANT` annotation type.
	AnnotationType_VARIANT AnnotationType = 2
	// A `GENE` annotation type represents the existence of a gene at the
	// associated reference coordinates. The start coordinate is typically the
	// gene's transcription start site and the end is typically the end of the
	// gene's last exon.
	AnnotationType_GENE AnnotationType = 3
	// A `TRANSCRIPT` annotation type represents the assertion that a
	// particular region of the reference genome may be transcribed as RNA.
	AnnotationType_TRANSCRIPT AnnotationType = 4
)

func (AnnotationType) EnumDescriptor 

func (AnnotationType) EnumDescriptor() ([]byte, []int)

func (AnnotationType) String 

func (x AnnotationType) String() string

type Annotation_Transcript 

type Annotation_Transcript struct {
	Transcript *Transcript `protobuf:"bytes,11,opt,name=transcript,proto3,oneof"`
}

type Annotation_Variant 

type Annotation_Variant struct {
	Variant *VariantAnnotation `protobuf:"bytes,10,opt,name=variant,proto3,oneof"`
}

type BatchCreateAnnotationsRequest 

type BatchCreateAnnotationsRequest struct {
	// The annotations to be created. At most 4096 can be specified in a single
	// request.
	Annotations []*Annotation `protobuf:"bytes,1,rep,name=annotations,proto3" json:"annotations,omitempty"`
	// A unique request ID which enables the server to detect duplicated requests.
	// If provided, duplicated requests will result in the same response; if not
	// provided, duplicated requests may result in duplicated data. For a given
	// annotation set, callers should not reuse `request_id`s when writing
	// different batches of annotations - behavior in this case is undefined.
	// A common approach is to use a UUID. For batch jobs where worker crashes are
	// a possibility, consider using some unique variant of a worker or run ID.
	RequestId            string   `protobuf:"bytes,2,opt,name=request_id,json=requestId,proto3" json:"request_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*BatchCreateAnnotationsRequest) Descriptor 

func (*BatchCreateAnnotationsRequest) Descriptor() ([]byte, []int)

func (*BatchCreateAnnotationsRequest) GetAnnotations 

func (m *BatchCreateAnnotationsRequest) GetAnnotations() []*Annotation

func (*BatchCreateAnnotationsRequest) GetRequestId 

func (m *BatchCreateAnnotationsRequest) GetRequestId() string

func (*BatchCreateAnnotationsRequest) ProtoMessage 

func (*BatchCreateAnnotationsRequest) ProtoMessage()

func (*BatchCreateAnnotationsRequest) Reset 

func (m *BatchCreateAnnotationsRequest) Reset()

func (*BatchCreateAnnotationsRequest) String 

func (m *BatchCreateAnnotationsRequest) String() string

func (*BatchCreateAnnotationsRequest) XXX_DiscardUnknown 

func (m *BatchCreateAnnotationsRequest) XXX_DiscardUnknown()

func (*BatchCreateAnnotationsRequest) XXX_Marshal 

func (m *BatchCreateAnnotationsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*BatchCreateAnnotationsRequest) XXX_Merge 

func (m *BatchCreateAnnotationsRequest) XXX_Merge(src proto.Message)

func (*BatchCreateAnnotationsRequest) XXX_Size 

func (m *BatchCreateAnnotationsRequest) XXX_Size() int

func (*BatchCreateAnnotationsRequest) XXX_Unmarshal 

func (m *BatchCreateAnnotationsRequest) XXX_Unmarshal(b []byte) error

type BatchCreateAnnotationsResponse 

type BatchCreateAnnotationsResponse struct {
	// The resulting per-annotation entries, ordered consistently with the
	// original request.
	Entries              []*BatchCreateAnnotationsResponse_Entry `protobuf:"bytes,1,rep,name=entries,proto3" json:"entries,omitempty"`
	XXX_NoUnkeyedLiteral struct{}                                `json:"-"`
	XXX_unrecognized     []byte                                  `json:"-"`
	XXX_sizecache        int32                                   `json:"-"`
}

func (*BatchCreateAnnotationsResponse) Descriptor 

func (*BatchCreateAnnotationsResponse) Descriptor() ([]byte, []int)

func (*BatchCreateAnnotationsResponse) GetEntries 

func (m *BatchCreateAnnotationsResponse) GetEntries() []*BatchCreateAnnotationsResponse_Entry

func (*BatchCreateAnnotationsResponse) ProtoMessage 

func (*BatchCreateAnnotationsResponse) ProtoMessage()

func (*BatchCreateAnnotationsResponse) Reset 

func (m *BatchCreateAnnotationsResponse) Reset()

func (*BatchCreateAnnotationsResponse) String 

func (m *BatchCreateAnnotationsResponse) String() string

func (*BatchCreateAnnotationsResponse) XXX_DiscardUnknown 

func (m *BatchCreateAnnotationsResponse) XXX_DiscardUnknown()

func (*BatchCreateAnnotationsResponse) XXX_Marshal 

func (m *BatchCreateAnnotationsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*BatchCreateAnnotationsResponse) XXX_Merge 

func (m *BatchCreateAnnotationsResponse) XXX_Merge(src proto.Message)

func (*BatchCreateAnnotationsResponse) XXX_Size 

func (m *BatchCreateAnnotationsResponse) XXX_Size() int

func (*BatchCreateAnnotationsResponse) XXX_Unmarshal 

func (m *BatchCreateAnnotationsResponse) XXX_Unmarshal(b []byte) error

type BatchCreateAnnotationsResponse_Entry 

type BatchCreateAnnotationsResponse_Entry struct {
	// The creation status.
	Status *status.Status `protobuf:"bytes,1,opt,name=status,proto3" json:"status,omitempty"`
	// The created annotation, if creation was successful.
	Annotation           *Annotation `protobuf:"bytes,2,opt,name=annotation,proto3" json:"annotation,omitempty"`
	XXX_NoUnkeyedLiteral struct{}    `json:"-"`
	XXX_unrecognized     []byte      `json:"-"`
	XXX_sizecache        int32       `json:"-"`
}

func (*BatchCreateAnnotationsResponse_Entry) Descriptor 

func (*BatchCreateAnnotationsResponse_Entry) Descriptor() ([]byte, []int)

func (*BatchCreateAnnotationsResponse_Entry) GetAnnotation 

func (m *BatchCreateAnnotationsResponse_Entry) GetAnnotation() *Annotation

func (*BatchCreateAnnotationsResponse_Entry) GetStatus 

func (m *BatchCreateAnnotationsResponse_Entry) GetStatus() *status.Status

func (*BatchCreateAnnotationsResponse_Entry) ProtoMessage 

func (*BatchCreateAnnotationsResponse_Entry) ProtoMessage()

func (*BatchCreateAnnotationsResponse_Entry) Reset 

func (m *BatchCreateAnnotationsResponse_Entry) Reset()

func (*BatchCreateAnnotationsResponse_Entry) String 

func (m *BatchCreateAnnotationsResponse_Entry) String() string

func (*BatchCreateAnnotationsResponse_Entry) XXX_DiscardUnknown 

func (m *BatchCreateAnnotationsResponse_Entry) XXX_DiscardUnknown()

func (*BatchCreateAnnotationsResponse_Entry) XXX_Marshal 

func (m *BatchCreateAnnotationsResponse_Entry) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*BatchCreateAnnotationsResponse_Entry) XXX_Merge 

func (m *BatchCreateAnnotationsResponse_Entry) XXX_Merge(src proto.Message)

func (*BatchCreateAnnotationsResponse_Entry) XXX_Size 

func (m *BatchCreateAnnotationsResponse_Entry) XXX_Size() int

func (*BatchCreateAnnotationsResponse_Entry) XXX_Unmarshal 

func (m *BatchCreateAnnotationsResponse_Entry) XXX_Unmarshal(b []byte) error

type CallSet 

type CallSet struct {
	// The server-generated call set ID, unique across all call sets.
	Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// The call set name.
	Name string `protobuf:"bytes,2,opt,name=name,proto3" json:"name,omitempty"`
	// The sample ID this call set corresponds to.
	SampleId string `protobuf:"bytes,7,opt,name=sample_id,json=sampleId,proto3" json:"sample_id,omitempty"`
	// The IDs of the variant sets this call set belongs to. This field must
	// have exactly length one, as a call set belongs to a single variant set.
	// This field is repeated for compatibility with the
	// [GA4GH 0.5.1
	// API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
	VariantSetIds []string `protobuf:"bytes,6,rep,name=variant_set_ids,json=variantSetIds,proto3" json:"variant_set_ids,omitempty"`
	// The date this call set was created in milliseconds from the epoch.
	Created int64 `protobuf:"varint,5,opt,name=created,proto3" json:"created,omitempty"`
	// A map of additional call set information. This must be of the form
	// map<string, string[]> (string key mapping to a list of string values).
	Info                 map[string]*_struct.ListValue `` /* 149-byte string literal not displayed */
	XXX_NoUnkeyedLiteral struct{}                      `json:"-"`
	XXX_unrecognized     []byte                        `json:"-"`
	XXX_sizecache        int32                         `json:"-"`
}

A call set is a collection of variant calls, typically for one sample. It belongs to a variant set.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

func (*CallSet) Descriptor 

func (*CallSet) Descriptor() ([]byte, []int)

func (*CallSet) GetCreated 

func (m *CallSet) GetCreated() int64

func (*CallSet) GetId 

func (m *CallSet) GetId() string

func (*CallSet) GetInfo 

func (m *CallSet) GetInfo() map[string]*_struct.ListValue

func (*CallSet) GetName 

func (m *CallSet) GetName() string

func (*CallSet) GetSampleId 

func (m *CallSet) GetSampleId() string

func (*CallSet) GetVariantSetIds 

func (m *CallSet) GetVariantSetIds() []string

func (*CallSet) ProtoMessage 

func (*CallSet) ProtoMessage()

func (*CallSet) Reset 

func (m *CallSet) Reset()

func (*CallSet) String 

func (m *CallSet) String() string

func (*CallSet) XXX_DiscardUnknown 

func (m *CallSet) XXX_DiscardUnknown()

func (*CallSet) XXX_Marshal 

func (m *CallSet) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*CallSet) XXX_Merge 

func (m *CallSet) XXX_Merge(src proto.Message)

func (*CallSet) XXX_Size 

func (m *CallSet) XXX_Size() int

func (*CallSet) XXX_Unmarshal 

func (m *CallSet) XXX_Unmarshal(b []byte) error

type CigarUnit 

type CigarUnit struct {
	Operation CigarUnit_Operation `protobuf:"varint,1,opt,name=operation,proto3,enum=google.genomics.v1.CigarUnit_Operation" json:"operation,omitempty"`
	// The number of genomic bases that the operation runs for. Required.
	OperationLength int64 `protobuf:"varint,2,opt,name=operation_length,json=operationLength,proto3" json:"operation_length,omitempty"`
	// `referenceSequence` is only used at mismatches
	// (`SEQUENCE_MISMATCH`) and deletions (`DELETE`).
	// Filling this field replaces SAM's MD tag. If the relevant information is
	// not available, this field is unset.
	ReferenceSequence    string   `protobuf:"bytes,3,opt,name=reference_sequence,json=referenceSequence,proto3" json:"reference_sequence,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

A single CIGAR operation.

func (*CigarUnit) Descriptor 

func (*CigarUnit) Descriptor() ([]byte, []int)

func (*CigarUnit) GetOperation 

func (m *CigarUnit) GetOperation() CigarUnit_Operation

func (*CigarUnit) GetOperationLength 

func (m *CigarUnit) GetOperationLength() int64

func (*CigarUnit) GetReferenceSequence 

func (m *CigarUnit) GetReferenceSequence() string

func (*CigarUnit) ProtoMessage 

func (*CigarUnit) ProtoMessage()

func (*CigarUnit) Reset 

func (m *CigarUnit) Reset()

func (*CigarUnit) String 

func (m *CigarUnit) String() string

func (*CigarUnit) XXX_DiscardUnknown 

func (m *CigarUnit) XXX_DiscardUnknown()

func (*CigarUnit) XXX_Marshal 

func (m *CigarUnit) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*CigarUnit) XXX_Merge 

func (m *CigarUnit) XXX_Merge(src proto.Message)

func (*CigarUnit) XXX_Size 

func (m *CigarUnit) XXX_Size() int

func (*CigarUnit) XXX_Unmarshal 

func (m *CigarUnit) XXX_Unmarshal(b []byte) error

type CigarUnit_Operation 

type CigarUnit_Operation int32

Describes the different types of CIGAR alignment operations that exist. Used wherever CIGAR alignments are used. 

const (
	CigarUnit_OPERATION_UNSPECIFIED CigarUnit_Operation = 0
	// An alignment match indicates that a sequence can be aligned to the
	// reference without evidence of an INDEL. Unlike the
	// `SEQUENCE_MATCH` and `SEQUENCE_MISMATCH` operators,
	// the `ALIGNMENT_MATCH` operator does not indicate whether the
	// reference and read sequences are an exact match. This operator is
	// equivalent to SAM's `M`.
	CigarUnit_ALIGNMENT_MATCH CigarUnit_Operation = 1
	// The insert operator indicates that the read contains evidence of bases
	// being inserted into the reference. This operator is equivalent to SAM's
	// `I`.
	CigarUnit_INSERT CigarUnit_Operation = 2
	// The delete operator indicates that the read contains evidence of bases
	// being deleted from the reference. This operator is equivalent to SAM's
	// `D`.
	CigarUnit_DELETE CigarUnit_Operation = 3
	// The skip operator indicates that this read skips a long segment of the
	// reference, but the bases have not been deleted. This operator is commonly
	// used when working with RNA-seq data, where reads may skip long segments
	// of the reference between exons. This operator is equivalent to SAM's
	// `N`.
	CigarUnit_SKIP CigarUnit_Operation = 4
	// The soft clip operator indicates that bases at the start/end of a read
	// have not been considered during alignment. This may occur if the majority
	// of a read maps, except for low quality bases at the start/end of a read.
	// This operator is equivalent to SAM's `S`. Bases that are soft
	// clipped will still be stored in the read.
	CigarUnit_CLIP_SOFT CigarUnit_Operation = 5
	// The hard clip operator indicates that bases at the start/end of a read
	// have been omitted from this alignment. This may occur if this linear
	// alignment is part of a chimeric alignment, or if the read has been
	// trimmed (for example, during error correction or to trim poly-A tails for
	// RNA-seq). This operator is equivalent to SAM's `H`.
	CigarUnit_CLIP_HARD CigarUnit_Operation = 6
	// The pad operator indicates that there is padding in an alignment. This
	// operator is equivalent to SAM's `P`.
	CigarUnit_PAD CigarUnit_Operation = 7
	// This operator indicates that this portion of the aligned sequence exactly
	// matches the reference. This operator is equivalent to SAM's `=`.
	CigarUnit_SEQUENCE_MATCH CigarUnit_Operation = 8
	// This operator indicates that this portion of the aligned sequence is an
	// alignment match to the reference, but a sequence mismatch. This can
	// indicate a SNP or a read error. This operator is equivalent to SAM's
	// `X`.
	CigarUnit_SEQUENCE_MISMATCH CigarUnit_Operation = 9
)

func (CigarUnit_Operation) EnumDescriptor 

func (CigarUnit_Operation) EnumDescriptor() ([]byte, []int)

func (CigarUnit_Operation) String 

func (x CigarUnit_Operation) String() string

type CoverageBucket 

type CoverageBucket struct {
	// The genomic coordinate range spanned by this bucket.
	Range *Range `protobuf:"bytes,1,opt,name=range,proto3" json:"range,omitempty"`
	// The average number of reads which are aligned to each individual
	// reference base in this bucket.
	MeanCoverage         float32  `protobuf:"fixed32,2,opt,name=mean_coverage,json=meanCoverage,proto3" json:"mean_coverage,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

A bucket over which read coverage has been precomputed. A bucket corresponds to a specific range of the reference sequence.

func (*CoverageBucket) Descriptor 

func (*CoverageBucket) Descriptor() ([]byte, []int)

func (*CoverageBucket) GetMeanCoverage 

func (m *CoverageBucket) GetMeanCoverage() float32

func (*CoverageBucket) GetRange 

func (m *CoverageBucket) GetRange() *Range

func (*CoverageBucket) ProtoMessage 

func (*CoverageBucket) ProtoMessage()

func (*CoverageBucket) Reset 

func (m *CoverageBucket) Reset()

func (*CoverageBucket) String 

func (m *CoverageBucket) String() string

func (*CoverageBucket) XXX_DiscardUnknown 

func (m *CoverageBucket) XXX_DiscardUnknown()

func (*CoverageBucket) XXX_Marshal 

func (m *CoverageBucket) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*CoverageBucket) XXX_Merge 

func (m *CoverageBucket) XXX_Merge(src proto.Message)

func (*CoverageBucket) XXX_Size 

func (m *CoverageBucket) XXX_Size() int

func (*CoverageBucket) XXX_Unmarshal 

func (m *CoverageBucket) XXX_Unmarshal(b []byte) error

type CreateAnnotationRequest 

type CreateAnnotationRequest struct {
	// The annotation to be created.
	Annotation           *Annotation `protobuf:"bytes,1,opt,name=annotation,proto3" json:"annotation,omitempty"`
	XXX_NoUnkeyedLiteral struct{}    `json:"-"`
	XXX_unrecognized     []byte      `json:"-"`
	XXX_sizecache        int32       `json:"-"`
}

func (*CreateAnnotationRequest) Descriptor 

func (*CreateAnnotationRequest) Descriptor() ([]byte, []int)

func (*CreateAnnotationRequest) GetAnnotation 

func (m *CreateAnnotationRequest) GetAnnotation() *Annotation

func (*CreateAnnotationRequest) ProtoMessage 

func (*CreateAnnotationRequest) ProtoMessage()

func (*CreateAnnotationRequest) Reset 

func (m *CreateAnnotationRequest) Reset()

func (*CreateAnnotationRequest) String 

func (m *CreateAnnotationRequest) String() string

func (*CreateAnnotationRequest) XXX_DiscardUnknown 

func (m *CreateAnnotationRequest) XXX_DiscardUnknown()

func (*CreateAnnotationRequest) XXX_Marshal 

func (m *CreateAnnotationRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*CreateAnnotationRequest) XXX_Merge 

func (m *CreateAnnotationRequest) XXX_Merge(src proto.Message)

func (*CreateAnnotationRequest) XXX_Size 

func (m *CreateAnnotationRequest) XXX_Size() int

func (*CreateAnnotationRequest) XXX_Unmarshal 

func (m *CreateAnnotationRequest) XXX_Unmarshal(b []byte) error

type CreateAnnotationSetRequest 

type CreateAnnotationSetRequest struct {
	// The annotation set to create.
	AnnotationSet        *AnnotationSet `protobuf:"bytes,1,opt,name=annotation_set,json=annotationSet,proto3" json:"annotation_set,omitempty"`
	XXX_NoUnkeyedLiteral struct{}       `json:"-"`
	XXX_unrecognized     []byte         `json:"-"`
	XXX_sizecache        int32          `json:"-"`
}

func (*CreateAnnotationSetRequest) Descriptor 

func (*CreateAnnotationSetRequest) Descriptor() ([]byte, []int)

func (*CreateAnnotationSetRequest) GetAnnotationSet 

func (m *CreateAnnotationSetRequest) GetAnnotationSet() *AnnotationSet

func (*CreateAnnotationSetRequest) ProtoMessage 

func (*CreateAnnotationSetRequest) ProtoMessage()

func (*CreateAnnotationSetRequest) Reset 

func (m *CreateAnnotationSetRequest) Reset()

func (*CreateAnnotationSetRequest) String 

func (m *CreateAnnotationSetRequest) String() string

func (*CreateAnnotationSetRequest) XXX_DiscardUnknown 

func (m *CreateAnnotationSetRequest) XXX_DiscardUnknown()

func (*CreateAnnotationSetRequest) XXX_Marshal 

func (m *CreateAnnotationSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*CreateAnnotationSetRequest) XXX_Merge 

func (m *CreateAnnotationSetRequest) XXX_Merge(src proto.Message)

func (*CreateAnnotationSetRequest) XXX_Size 

func (m *CreateAnnotationSetRequest) XXX_Size() int

func (*CreateAnnotationSetRequest) XXX_Unmarshal 

func (m *CreateAnnotationSetRequest) XXX_Unmarshal(b []byte) error

type CreateCallSetRequest 

type CreateCallSetRequest struct {
	// The call set to be created.
	CallSet              *CallSet `protobuf:"bytes,1,opt,name=call_set,json=callSet,proto3" json:"call_set,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*CreateCallSetRequest) Descriptor 

func (*CreateCallSetRequest) Descriptor() ([]byte, []int)

func (*CreateCallSetRequest) GetCallSet 

func (m *CreateCallSetRequest) GetCallSet() *CallSet

func (*CreateCallSetRequest) ProtoMessage 

func (*CreateCallSetRequest) ProtoMessage()

func (*CreateCallSetRequest) Reset 

func (m *CreateCallSetRequest) Reset()

func (*CreateCallSetRequest) String 

func (m *CreateCallSetRequest) String() string

func (*CreateCallSetRequest) XXX_DiscardUnknown 

func (m *CreateCallSetRequest) XXX_DiscardUnknown()

func (*CreateCallSetRequest) XXX_Marshal 

func (m *CreateCallSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*CreateCallSetRequest) XXX_Merge 

func (m *CreateCallSetRequest) XXX_Merge(src proto.Message)

func (*CreateCallSetRequest) XXX_Size 

func (m *CreateCallSetRequest) XXX_Size() int

func (*CreateCallSetRequest) XXX_Unmarshal 

func (m *CreateCallSetRequest) XXX_Unmarshal(b []byte) error

type CreateDatasetRequest 

type CreateDatasetRequest struct {
	// The dataset to be created. Must contain projectId and name.
	Dataset              *Dataset `protobuf:"bytes,1,opt,name=dataset,proto3" json:"dataset,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*CreateDatasetRequest) Descriptor 

func (*CreateDatasetRequest) Descriptor() ([]byte, []int)

func (*CreateDatasetRequest) GetDataset 

func (m *CreateDatasetRequest) GetDataset() *Dataset

func (*CreateDatasetRequest) ProtoMessage 

func (*CreateDatasetRequest) ProtoMessage()

func (*CreateDatasetRequest) Reset 

func (m *CreateDatasetRequest) Reset()

func (*CreateDatasetRequest) String 

func (m *CreateDatasetRequest) String() string

func (*CreateDatasetRequest) XXX_DiscardUnknown 

func (m *CreateDatasetRequest) XXX_DiscardUnknown()

func (*CreateDatasetRequest) XXX_Marshal 

func (m *CreateDatasetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*CreateDatasetRequest) XXX_Merge 

func (m *CreateDatasetRequest) XXX_Merge(src proto.Message)

func (*CreateDatasetRequest) XXX_Size 

func (m *CreateDatasetRequest) XXX_Size() int

func (*CreateDatasetRequest) XXX_Unmarshal 

func (m *CreateDatasetRequest) XXX_Unmarshal(b []byte) error

type CreateVariantRequest 

type CreateVariantRequest struct {
	// The variant to be created.
	Variant              *Variant `protobuf:"bytes,1,opt,name=variant,proto3" json:"variant,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*CreateVariantRequest) Descriptor 

func (*CreateVariantRequest) Descriptor() ([]byte, []int)

func (*CreateVariantRequest) GetVariant 

func (m *CreateVariantRequest) GetVariant() *Variant

func (*CreateVariantRequest) ProtoMessage 

func (*CreateVariantRequest) ProtoMessage()

func (*CreateVariantRequest) Reset 

func (m *CreateVariantRequest) Reset()

func (*CreateVariantRequest) String 

func (m *CreateVariantRequest) String() string

func (*CreateVariantRequest) XXX_DiscardUnknown 

func (m *CreateVariantRequest) XXX_DiscardUnknown()

func (*CreateVariantRequest) XXX_Marshal 

func (m *CreateVariantRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*CreateVariantRequest) XXX_Merge 

func (m *CreateVariantRequest) XXX_Merge(src proto.Message)

func (*CreateVariantRequest) XXX_Size 

func (m *CreateVariantRequest) XXX_Size() int

func (*CreateVariantRequest) XXX_Unmarshal 

func (m *CreateVariantRequest) XXX_Unmarshal(b []byte) error

type CreateVariantSetRequest 

type CreateVariantSetRequest struct {
	// Required. The variant set to be created. Must have a valid `datasetId`.
	VariantSet           *VariantSet `protobuf:"bytes,1,opt,name=variant_set,json=variantSet,proto3" json:"variant_set,omitempty"`
	XXX_NoUnkeyedLiteral struct{}    `json:"-"`
	XXX_unrecognized     []byte      `json:"-"`
	XXX_sizecache        int32       `json:"-"`
}

The CreateVariantSet request

func (*CreateVariantSetRequest) Descriptor 

func (*CreateVariantSetRequest) Descriptor() ([]byte, []int)

func (*CreateVariantSetRequest) GetVariantSet 

func (m *CreateVariantSetRequest) GetVariantSet() *VariantSet

func (*CreateVariantSetRequest) ProtoMessage 

func (*CreateVariantSetRequest) ProtoMessage()

func (*CreateVariantSetRequest) Reset 

func (m *CreateVariantSetRequest) Reset()

func (*CreateVariantSetRequest) String 

func (m *CreateVariantSetRequest) String() string

func (*CreateVariantSetRequest) XXX_DiscardUnknown 

func (m *CreateVariantSetRequest) XXX_DiscardUnknown()

func (*CreateVariantSetRequest) XXX_Marshal 

func (m *CreateVariantSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*CreateVariantSetRequest) XXX_Merge 

func (m *CreateVariantSetRequest) XXX_Merge(src proto.Message)

func (*CreateVariantSetRequest) XXX_Size 

func (m *CreateVariantSetRequest) XXX_Size() int

func (*CreateVariantSetRequest) XXX_Unmarshal 

func (m *CreateVariantSetRequest) XXX_Unmarshal(b []byte) error

type Dataset 

type Dataset struct {
	// The server-generated dataset ID, unique across all datasets.
	Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// The Google Cloud project ID that this dataset belongs to.
	ProjectId string `protobuf:"bytes,2,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
	// The dataset name.
	Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
	// The time this dataset was created, in seconds from the epoch.
	CreateTime           *timestamp.Timestamp `protobuf:"bytes,4,opt,name=create_time,json=createTime,proto3" json:"create_time,omitempty"`
	XXX_NoUnkeyedLiteral struct{}             `json:"-"`
	XXX_unrecognized     []byte               `json:"-"`
	XXX_sizecache        int32                `json:"-"`
}

A Dataset is a collection of genomic data.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

func (*Dataset) Descriptor 

func (*Dataset) Descriptor() ([]byte, []int)

func (*Dataset) GetCreateTime 

func (m *Dataset) GetCreateTime() *timestamp.Timestamp

func (*Dataset) GetId 

func (m *Dataset) GetId() string

func (*Dataset) GetName 

func (m *Dataset) GetName() string

func (*Dataset) GetProjectId 

func (m *Dataset) GetProjectId() string

func (*Dataset) ProtoMessage 

func (*Dataset) ProtoMessage()

func (*Dataset) Reset 

func (m *Dataset) Reset()

func (*Dataset) String 

func (m *Dataset) String() string

func (*Dataset) XXX_DiscardUnknown 

func (m *Dataset) XXX_DiscardUnknown()

func (*Dataset) XXX_Marshal 

func (m *Dataset) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*Dataset) XXX_Merge 

func (m *Dataset) XXX_Merge(src proto.Message)

func (*Dataset) XXX_Size 

func (m *Dataset) XXX_Size() int

func (*Dataset) XXX_Unmarshal 

func (m *Dataset) XXX_Unmarshal(b []byte) error

type DatasetServiceV1Client 

type DatasetServiceV1Client interface {
	// Lists datasets within a project.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	ListDatasets(ctx context.Context, in *ListDatasetsRequest, opts ...grpc.CallOption) (*ListDatasetsResponse, error)
	// Creates a new dataset.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	CreateDataset(ctx context.Context, in *CreateDatasetRequest, opts ...grpc.CallOption) (*Dataset, error)
	// Gets a dataset by ID.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	GetDataset(ctx context.Context, in *GetDatasetRequest, opts ...grpc.CallOption) (*Dataset, error)
	// Updates a dataset.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// This method supports patch semantics.
	UpdateDataset(ctx context.Context, in *UpdateDatasetRequest, opts ...grpc.CallOption) (*Dataset, error)
	// Deletes a dataset and all of its contents (all read group sets,
	// reference sets, variant sets, call sets, annotation sets, etc.)
	// This is reversible (up to one week after the deletion) via
	// the
	// [datasets.undelete][google.genomics.v1.DatasetServiceV1.UndeleteDataset]
	// operation.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	DeleteDataset(ctx context.Context, in *DeleteDatasetRequest, opts ...grpc.CallOption) (*empty.Empty, error)
	// Undeletes a dataset by restoring a dataset which was deleted via this API.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// This operation is only possible for a week after the deletion occurred.
	UndeleteDataset(ctx context.Context, in *UndeleteDatasetRequest, opts ...grpc.CallOption) (*Dataset, error)
	// Sets the access control policy on the specified dataset. Replaces any
	// existing policy.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// See <a href="/iam/docs/managing-policies#setting_a_policy">Setting a
	// Policy</a> for more information.
	SetIamPolicy(ctx context.Context, in *v1.SetIamPolicyRequest, opts ...grpc.CallOption) (*v1.Policy, error)
	// Gets the access control policy for the dataset. This is empty if the
	// policy or resource does not exist.
	//
	// See <a href="/iam/docs/managing-policies#getting_a_policy">Getting a
	// Policy</a> for more information.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	GetIamPolicy(ctx context.Context, in *v1.GetIamPolicyRequest, opts ...grpc.CallOption) (*v1.Policy, error)
	// Returns permissions that a caller has on the specified resource.
	// See <a href="/iam/docs/managing-policies#testing_permissions">Testing
	// Permissions</a> for more information.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	TestIamPermissions(ctx context.Context, in *v1.TestIamPermissionsRequest, opts ...grpc.CallOption) (*v1.TestIamPermissionsResponse, error)
}

DatasetServiceV1Client is the client API for DatasetServiceV1 service.

For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.

func NewDatasetServiceV1Client 

func NewDatasetServiceV1Client(cc *grpc.ClientConn) DatasetServiceV1Client

type DatasetServiceV1Server 

type DatasetServiceV1Server interface {
	// Lists datasets within a project.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	ListDatasets(context.Context, *ListDatasetsRequest) (*ListDatasetsResponse, error)
	// Creates a new dataset.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	CreateDataset(context.Context, *CreateDatasetRequest) (*Dataset, error)
	// Gets a dataset by ID.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	GetDataset(context.Context, *GetDatasetRequest) (*Dataset, error)
	// Updates a dataset.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// This method supports patch semantics.
	UpdateDataset(context.Context, *UpdateDatasetRequest) (*Dataset, error)
	// Deletes a dataset and all of its contents (all read group sets,
	// reference sets, variant sets, call sets, annotation sets, etc.)
	// This is reversible (up to one week after the deletion) via
	// the
	// [datasets.undelete][google.genomics.v1.DatasetServiceV1.UndeleteDataset]
	// operation.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	DeleteDataset(context.Context, *DeleteDatasetRequest) (*empty.Empty, error)
	// Undeletes a dataset by restoring a dataset which was deleted via this API.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// This operation is only possible for a week after the deletion occurred.
	UndeleteDataset(context.Context, *UndeleteDatasetRequest) (*Dataset, error)
	// Sets the access control policy on the specified dataset. Replaces any
	// existing policy.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// See <a href="/iam/docs/managing-policies#setting_a_policy">Setting a
	// Policy</a> for more information.
	SetIamPolicy(context.Context, *v1.SetIamPolicyRequest) (*v1.Policy, error)
	// Gets the access control policy for the dataset. This is empty if the
	// policy or resource does not exist.
	//
	// See <a href="/iam/docs/managing-policies#getting_a_policy">Getting a
	// Policy</a> for more information.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	GetIamPolicy(context.Context, *v1.GetIamPolicyRequest) (*v1.Policy, error)
	// Returns permissions that a caller has on the specified resource.
	// See <a href="/iam/docs/managing-policies#testing_permissions">Testing
	// Permissions</a> for more information.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	TestIamPermissions(context.Context, *v1.TestIamPermissionsRequest) (*v1.TestIamPermissionsResponse, error)
}

DatasetServiceV1Server is the server API for DatasetServiceV1 service.

type DeleteAnnotationRequest 

type DeleteAnnotationRequest struct {
	// The ID of the annotation to be deleted.
	AnnotationId         string   `protobuf:"bytes,1,opt,name=annotation_id,json=annotationId,proto3" json:"annotation_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*DeleteAnnotationRequest) Descriptor 

func (*DeleteAnnotationRequest) Descriptor() ([]byte, []int)

func (*DeleteAnnotationRequest) GetAnnotationId 

func (m *DeleteAnnotationRequest) GetAnnotationId() string

func (*DeleteAnnotationRequest) ProtoMessage 

func (*DeleteAnnotationRequest) ProtoMessage()

func (*DeleteAnnotationRequest) Reset 

func (m *DeleteAnnotationRequest) Reset()

func (*DeleteAnnotationRequest) String 

func (m *DeleteAnnotationRequest) String() string

func (*DeleteAnnotationRequest) XXX_DiscardUnknown 

func (m *DeleteAnnotationRequest) XXX_DiscardUnknown()

func (*DeleteAnnotationRequest) XXX_Marshal 

func (m *DeleteAnnotationRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*DeleteAnnotationRequest) XXX_Merge 

func (m *DeleteAnnotationRequest) XXX_Merge(src proto.Message)

func (*DeleteAnnotationRequest) XXX_Size 

func (m *DeleteAnnotationRequest) XXX_Size() int

func (*DeleteAnnotationRequest) XXX_Unmarshal 

func (m *DeleteAnnotationRequest) XXX_Unmarshal(b []byte) error

type DeleteAnnotationSetRequest 

type DeleteAnnotationSetRequest struct {
	// The ID of the annotation set to be deleted.
	AnnotationSetId      string   `protobuf:"bytes,1,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*DeleteAnnotationSetRequest) Descriptor 

func (*DeleteAnnotationSetRequest) Descriptor() ([]byte, []int)

func (*DeleteAnnotationSetRequest) GetAnnotationSetId 

func (m *DeleteAnnotationSetRequest) GetAnnotationSetId() string

func (*DeleteAnnotationSetRequest) ProtoMessage 

func (*DeleteAnnotationSetRequest) ProtoMessage()

func (*DeleteAnnotationSetRequest) Reset 

func (m *DeleteAnnotationSetRequest) Reset()

func (*DeleteAnnotationSetRequest) String 

func (m *DeleteAnnotationSetRequest) String() string

func (*DeleteAnnotationSetRequest) XXX_DiscardUnknown 

func (m *DeleteAnnotationSetRequest) XXX_DiscardUnknown()

func (*DeleteAnnotationSetRequest) XXX_Marshal 

func (m *DeleteAnnotationSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*DeleteAnnotationSetRequest) XXX_Merge 

func (m *DeleteAnnotationSetRequest) XXX_Merge(src proto.Message)

func (*DeleteAnnotationSetRequest) XXX_Size 

func (m *DeleteAnnotationSetRequest) XXX_Size() int

func (*DeleteAnnotationSetRequest) XXX_Unmarshal 

func (m *DeleteAnnotationSetRequest) XXX_Unmarshal(b []byte) error

type DeleteCallSetRequest 

type DeleteCallSetRequest struct {
	// The ID of the call set to be deleted.
	CallSetId            string   `protobuf:"bytes,1,opt,name=call_set_id,json=callSetId,proto3" json:"call_set_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*DeleteCallSetRequest) Descriptor 

func (*DeleteCallSetRequest) Descriptor() ([]byte, []int)

func (*DeleteCallSetRequest) GetCallSetId 

func (m *DeleteCallSetRequest) GetCallSetId() string

func (*DeleteCallSetRequest) ProtoMessage 

func (*DeleteCallSetRequest) ProtoMessage()

func (*DeleteCallSetRequest) Reset 

func (m *DeleteCallSetRequest) Reset()

func (*DeleteCallSetRequest) String 

func (m *DeleteCallSetRequest) String() string

func (*DeleteCallSetRequest) XXX_DiscardUnknown 

func (m *DeleteCallSetRequest) XXX_DiscardUnknown()

func (*DeleteCallSetRequest) XXX_Marshal 

func (m *DeleteCallSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*DeleteCallSetRequest) XXX_Merge 

func (m *DeleteCallSetRequest) XXX_Merge(src proto.Message)

func (*DeleteCallSetRequest) XXX_Size 

func (m *DeleteCallSetRequest) XXX_Size() int

func (*DeleteCallSetRequest) XXX_Unmarshal 

func (m *DeleteCallSetRequest) XXX_Unmarshal(b []byte) error

type DeleteDatasetRequest 

type DeleteDatasetRequest struct {
	// The ID of the dataset to be deleted.
	DatasetId            string   `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*DeleteDatasetRequest) Descriptor 

func (*DeleteDatasetRequest) Descriptor() ([]byte, []int)

func (*DeleteDatasetRequest) GetDatasetId 

func (m *DeleteDatasetRequest) GetDatasetId() string

func (*DeleteDatasetRequest) ProtoMessage 

func (*DeleteDatasetRequest) ProtoMessage()

func (*DeleteDatasetRequest) Reset 

func (m *DeleteDatasetRequest) Reset()

func (*DeleteDatasetRequest) String 

func (m *DeleteDatasetRequest) String() string

func (*DeleteDatasetRequest) XXX_DiscardUnknown 

func (m *DeleteDatasetRequest) XXX_DiscardUnknown()

func (*DeleteDatasetRequest) XXX_Marshal 

func (m *DeleteDatasetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*DeleteDatasetRequest) XXX_Merge 

func (m *DeleteDatasetRequest) XXX_Merge(src proto.Message)

func (*DeleteDatasetRequest) XXX_Size 

func (m *DeleteDatasetRequest) XXX_Size() int

func (*DeleteDatasetRequest) XXX_Unmarshal 

func (m *DeleteDatasetRequest) XXX_Unmarshal(b []byte) error

type DeleteReadGroupSetRequest 

type DeleteReadGroupSetRequest struct {
	// The ID of the read group set to be deleted. The caller must have WRITE
	// permissions to the dataset associated with this read group set.
	ReadGroupSetId       string   `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*DeleteReadGroupSetRequest) Descriptor 

func (*DeleteReadGroupSetRequest) Descriptor() ([]byte, []int)

func (*DeleteReadGroupSetRequest) GetReadGroupSetId 

func (m *DeleteReadGroupSetRequest) GetReadGroupSetId() string

func (*DeleteReadGroupSetRequest) ProtoMessage 

func (*DeleteReadGroupSetRequest) ProtoMessage()

func (*DeleteReadGroupSetRequest) Reset 

func (m *DeleteReadGroupSetRequest) Reset()

func (*DeleteReadGroupSetRequest) String 

func (m *DeleteReadGroupSetRequest) String() string

func (*DeleteReadGroupSetRequest) XXX_DiscardUnknown 

func (m *DeleteReadGroupSetRequest) XXX_DiscardUnknown()

func (*DeleteReadGroupSetRequest) XXX_Marshal 

func (m *DeleteReadGroupSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*DeleteReadGroupSetRequest) XXX_Merge 

func (m *DeleteReadGroupSetRequest) XXX_Merge(src proto.Message)

func (*DeleteReadGroupSetRequest) XXX_Size 

func (m *DeleteReadGroupSetRequest) XXX_Size() int

func (*DeleteReadGroupSetRequest) XXX_Unmarshal 

func (m *DeleteReadGroupSetRequest) XXX_Unmarshal(b []byte) error

type DeleteVariantRequest 

type DeleteVariantRequest struct {
	// The ID of the variant to be deleted.
	VariantId            string   `protobuf:"bytes,1,opt,name=variant_id,json=variantId,proto3" json:"variant_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*DeleteVariantRequest) Descriptor 

func (*DeleteVariantRequest) Descriptor() ([]byte, []int)

func (*DeleteVariantRequest) GetVariantId 

func (m *DeleteVariantRequest) GetVariantId() string

func (*DeleteVariantRequest) ProtoMessage 

func (*DeleteVariantRequest) ProtoMessage()

func (*DeleteVariantRequest) Reset 

func (m *DeleteVariantRequest) Reset()

func (*DeleteVariantRequest) String 

func (m *DeleteVariantRequest) String() string

func (*DeleteVariantRequest) XXX_DiscardUnknown 

func (m *DeleteVariantRequest) XXX_DiscardUnknown()

func (*DeleteVariantRequest) XXX_Marshal 

func (m *DeleteVariantRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*DeleteVariantRequest) XXX_Merge 

func (m *DeleteVariantRequest) XXX_Merge(src proto.Message)

func (*DeleteVariantRequest) XXX_Size 

func (m *DeleteVariantRequest) XXX_Size() int

func (*DeleteVariantRequest) XXX_Unmarshal 

func (m *DeleteVariantRequest) XXX_Unmarshal(b []byte) error

type DeleteVariantSetRequest 

type DeleteVariantSetRequest struct {
	// The ID of the variant set to be deleted.
	VariantSetId         string   `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The delete variant set request.

func (*DeleteVariantSetRequest) Descriptor 

func (*DeleteVariantSetRequest) Descriptor() ([]byte, []int)

func (*DeleteVariantSetRequest) GetVariantSetId 

func (m *DeleteVariantSetRequest) GetVariantSetId() string

func (*DeleteVariantSetRequest) ProtoMessage 

func (*DeleteVariantSetRequest) ProtoMessage()

func (*DeleteVariantSetRequest) Reset 

func (m *DeleteVariantSetRequest) Reset()

func (*DeleteVariantSetRequest) String 

func (m *DeleteVariantSetRequest) String() string

func (*DeleteVariantSetRequest) XXX_DiscardUnknown 

func (m *DeleteVariantSetRequest) XXX_DiscardUnknown()

func (*DeleteVariantSetRequest) XXX_Marshal 

func (m *DeleteVariantSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*DeleteVariantSetRequest) XXX_Merge 

func (m *DeleteVariantSetRequest) XXX_Merge(src proto.Message)

func (*DeleteVariantSetRequest) XXX_Size 

func (m *DeleteVariantSetRequest) XXX_Size() int

func (*DeleteVariantSetRequest) XXX_Unmarshal 

func (m *DeleteVariantSetRequest) XXX_Unmarshal(b []byte) error

type ExportReadGroupSetRequest 

type ExportReadGroupSetRequest struct {
	// Required. The Google Cloud project ID that owns this
	// export. The caller must have WRITE access to this project.
	ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
	// Required. A Google Cloud Storage URI for the exported BAM file.
	// The currently authenticated user must have write access to the new file.
	// An error will be returned if the URI already contains data.
	ExportUri string `protobuf:"bytes,2,opt,name=export_uri,json=exportUri,proto3" json:"export_uri,omitempty"`
	// Required. The ID of the read group set to export. The caller must have
	// READ access to this read group set.
	ReadGroupSetId string `protobuf:"bytes,3,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
	// The reference names to export. If this is not specified, all reference
	// sequences, including unmapped reads, are exported.
	// Use `*` to export only unmapped reads.
	ReferenceNames       []string `protobuf:"bytes,4,rep,name=reference_names,json=referenceNames,proto3" json:"reference_names,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The read group set export request.

func (*ExportReadGroupSetRequest) Descriptor 

func (*ExportReadGroupSetRequest) Descriptor() ([]byte, []int)

func (*ExportReadGroupSetRequest) GetExportUri 

func (m *ExportReadGroupSetRequest) GetExportUri() string

func (*ExportReadGroupSetRequest) GetProjectId 

func (m *ExportReadGroupSetRequest) GetProjectId() string

func (*ExportReadGroupSetRequest) GetReadGroupSetId 

func (m *ExportReadGroupSetRequest) GetReadGroupSetId() string

func (*ExportReadGroupSetRequest) GetReferenceNames 

func (m *ExportReadGroupSetRequest) GetReferenceNames() []string

func (*ExportReadGroupSetRequest) ProtoMessage 

func (*ExportReadGroupSetRequest) ProtoMessage()

func (*ExportReadGroupSetRequest) Reset 

func (m *ExportReadGroupSetRequest) Reset()

func (*ExportReadGroupSetRequest) String 

func (m *ExportReadGroupSetRequest) String() string

func (*ExportReadGroupSetRequest) XXX_DiscardUnknown 

func (m *ExportReadGroupSetRequest) XXX_DiscardUnknown()

func (*ExportReadGroupSetRequest) XXX_Marshal 

func (m *ExportReadGroupSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ExportReadGroupSetRequest) XXX_Merge 

func (m *ExportReadGroupSetRequest) XXX_Merge(src proto.Message)

func (*ExportReadGroupSetRequest) XXX_Size 

func (m *ExportReadGroupSetRequest) XXX_Size() int

func (*ExportReadGroupSetRequest) XXX_Unmarshal 

func (m *ExportReadGroupSetRequest) XXX_Unmarshal(b []byte) error

type ExportVariantSetRequest 

type ExportVariantSetRequest struct {
	// Required. The ID of the variant set that contains variant data which
	// should be exported. The caller must have READ access to this variant set.
	VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
	// If provided, only variant call information from the specified call sets
	// will be exported. By default all variant calls are exported.
	CallSetIds []string `protobuf:"bytes,2,rep,name=call_set_ids,json=callSetIds,proto3" json:"call_set_ids,omitempty"`
	// Required. The Google Cloud project ID that owns the destination
	// BigQuery dataset. The caller must have WRITE access to this project.  This
	// project will also own the resulting export job.
	ProjectId string `protobuf:"bytes,3,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
	// The format for the exported data.
	Format ExportVariantSetRequest_Format `protobuf:"varint,4,opt,name=format,proto3,enum=google.genomics.v1.ExportVariantSetRequest_Format" json:"format,omitempty"`
	// Required. The BigQuery dataset to export data to. This dataset must already
	// exist. Note that this is distinct from the Genomics concept of "dataset".
	BigqueryDataset string `protobuf:"bytes,5,opt,name=bigquery_dataset,json=bigqueryDataset,proto3" json:"bigquery_dataset,omitempty"`
	// Required. The BigQuery table to export data to.
	// If the table doesn't exist, it will be created. If it already exists, it
	// will be overwritten.
	BigqueryTable        string   `protobuf:"bytes,6,opt,name=bigquery_table,json=bigqueryTable,proto3" json:"bigquery_table,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The variant data export request.

func (*ExportVariantSetRequest) Descriptor 

func (*ExportVariantSetRequest) Descriptor() ([]byte, []int)

func (*ExportVariantSetRequest) GetBigqueryDataset 

func (m *ExportVariantSetRequest) GetBigqueryDataset() string

func (*ExportVariantSetRequest) GetBigqueryTable 

func (m *ExportVariantSetRequest) GetBigqueryTable() string

func (*ExportVariantSetRequest) GetCallSetIds 

func (m *ExportVariantSetRequest) GetCallSetIds() []string

func (*ExportVariantSetRequest) GetFormat 

func (m *ExportVariantSetRequest) GetFormat() ExportVariantSetRequest_Format

func (*ExportVariantSetRequest) GetProjectId 

func (m *ExportVariantSetRequest) GetProjectId() string

func (*ExportVariantSetRequest) GetVariantSetId 

func (m *ExportVariantSetRequest) GetVariantSetId() string

func (*ExportVariantSetRequest) ProtoMessage 

func (*ExportVariantSetRequest) ProtoMessage()

func (*ExportVariantSetRequest) Reset 

func (m *ExportVariantSetRequest) Reset()

func (*ExportVariantSetRequest) String 

func (m *ExportVariantSetRequest) String() string

func (*ExportVariantSetRequest) XXX_DiscardUnknown 

func (m *ExportVariantSetRequest) XXX_DiscardUnknown()

func (*ExportVariantSetRequest) XXX_Marshal 

func (m *ExportVariantSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ExportVariantSetRequest) XXX_Merge 

func (m *ExportVariantSetRequest) XXX_Merge(src proto.Message)

func (*ExportVariantSetRequest) XXX_Size 

func (m *ExportVariantSetRequest) XXX_Size() int

func (*ExportVariantSetRequest) XXX_Unmarshal 

func (m *ExportVariantSetRequest) XXX_Unmarshal(b []byte) error

type ExportVariantSetRequest_Format 

type ExportVariantSetRequest_Format int32
const (
	ExportVariantSetRequest_FORMAT_UNSPECIFIED ExportVariantSetRequest_Format = 0
	// Export the data to Google BigQuery.
	ExportVariantSetRequest_FORMAT_BIGQUERY ExportVariantSetRequest_Format = 1
)

func (ExportVariantSetRequest_Format) EnumDescriptor 

func (ExportVariantSetRequest_Format) EnumDescriptor() ([]byte, []int)

func (ExportVariantSetRequest_Format) String 

func (x ExportVariantSetRequest_Format) String() string

type ExternalId 

type ExternalId struct {
	// The name of the source of this data.
	SourceName string `protobuf:"bytes,1,opt,name=source_name,json=sourceName,proto3" json:"source_name,omitempty"`
	// The id used by the source of this data.
	Id                   string   `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*ExternalId) Descriptor 

func (*ExternalId) Descriptor() ([]byte, []int)

func (*ExternalId) GetId 

func (m *ExternalId) GetId() string

func (*ExternalId) GetSourceName 

func (m *ExternalId) GetSourceName() string

func (*ExternalId) ProtoMessage 

func (*ExternalId) ProtoMessage()

func (*ExternalId) Reset 

func (m *ExternalId) Reset()

func (*ExternalId) String 

func (m *ExternalId) String() string

func (*ExternalId) XXX_DiscardUnknown 

func (m *ExternalId) XXX_DiscardUnknown()

func (*ExternalId) XXX_Marshal 

func (m *ExternalId) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ExternalId) XXX_Merge 

func (m *ExternalId) XXX_Merge(src proto.Message)

func (*ExternalId) XXX_Size 

func (m *ExternalId) XXX_Size() int

func (*ExternalId) XXX_Unmarshal 

func (m *ExternalId) XXX_Unmarshal(b []byte) error

type GetAnnotationRequest 

type GetAnnotationRequest struct {
	// The ID of the annotation to be retrieved.
	AnnotationId         string   `protobuf:"bytes,1,opt,name=annotation_id,json=annotationId,proto3" json:"annotation_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*GetAnnotationRequest) Descriptor 

func (*GetAnnotationRequest) Descriptor() ([]byte, []int)

func (*GetAnnotationRequest) GetAnnotationId 

func (m *GetAnnotationRequest) GetAnnotationId() string

func (*GetAnnotationRequest) ProtoMessage 

func (*GetAnnotationRequest) ProtoMessage()

func (*GetAnnotationRequest) Reset 

func (m *GetAnnotationRequest) Reset()

func (*GetAnnotationRequest) String 

func (m *GetAnnotationRequest) String() string

func (*GetAnnotationRequest) XXX_DiscardUnknown 

func (m *GetAnnotationRequest) XXX_DiscardUnknown()

func (*GetAnnotationRequest) XXX_Marshal 

func (m *GetAnnotationRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*GetAnnotationRequest) XXX_Merge 

func (m *GetAnnotationRequest) XXX_Merge(src proto.Message)

func (*GetAnnotationRequest) XXX_Size 

func (m *GetAnnotationRequest) XXX_Size() int

func (*GetAnnotationRequest) XXX_Unmarshal 

func (m *GetAnnotationRequest) XXX_Unmarshal(b []byte) error

type GetAnnotationSetRequest 

type GetAnnotationSetRequest struct {
	// The ID of the annotation set to be retrieved.
	AnnotationSetId      string   `protobuf:"bytes,1,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*GetAnnotationSetRequest) Descriptor 

func (*GetAnnotationSetRequest) Descriptor() ([]byte, []int)

func (*GetAnnotationSetRequest) GetAnnotationSetId 

func (m *GetAnnotationSetRequest) GetAnnotationSetId() string

func (*GetAnnotationSetRequest) ProtoMessage 

func (*GetAnnotationSetRequest) ProtoMessage()

func (*GetAnnotationSetRequest) Reset 

func (m *GetAnnotationSetRequest) Reset()

func (*GetAnnotationSetRequest) String 

func (m *GetAnnotationSetRequest) String() string

func (*GetAnnotationSetRequest) XXX_DiscardUnknown 

func (m *GetAnnotationSetRequest) XXX_DiscardUnknown()

func (*GetAnnotationSetRequest) XXX_Marshal 

func (m *GetAnnotationSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*GetAnnotationSetRequest) XXX_Merge 

func (m *GetAnnotationSetRequest) XXX_Merge(src proto.Message)

func (*GetAnnotationSetRequest) XXX_Size 

func (m *GetAnnotationSetRequest) XXX_Size() int

func (*GetAnnotationSetRequest) XXX_Unmarshal 

func (m *GetAnnotationSetRequest) XXX_Unmarshal(b []byte) error

type GetCallSetRequest 

type GetCallSetRequest struct {
	// The ID of the call set.
	CallSetId            string   `protobuf:"bytes,1,opt,name=call_set_id,json=callSetId,proto3" json:"call_set_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*GetCallSetRequest) Descriptor 

func (*GetCallSetRequest) Descriptor() ([]byte, []int)

func (*GetCallSetRequest) GetCallSetId 

func (m *GetCallSetRequest) GetCallSetId() string

func (*GetCallSetRequest) ProtoMessage 

func (*GetCallSetRequest) ProtoMessage()

func (*GetCallSetRequest) Reset 

func (m *GetCallSetRequest) Reset()

func (*GetCallSetRequest) String 

func (m *GetCallSetRequest) String() string

func (*GetCallSetRequest) XXX_DiscardUnknown 

func (m *GetCallSetRequest) XXX_DiscardUnknown()

func (*GetCallSetRequest) XXX_Marshal 

func (m *GetCallSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*GetCallSetRequest) XXX_Merge 

func (m *GetCallSetRequest) XXX_Merge(src proto.Message)

func (*GetCallSetRequest) XXX_Size 

func (m *GetCallSetRequest) XXX_Size() int

func (*GetCallSetRequest) XXX_Unmarshal 

func (m *GetCallSetRequest) XXX_Unmarshal(b []byte) error

type GetDatasetRequest 

type GetDatasetRequest struct {
	// The ID of the dataset.
	DatasetId            string   `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*GetDatasetRequest) Descriptor 

func (*GetDatasetRequest) Descriptor() ([]byte, []int)

func (*GetDatasetRequest) GetDatasetId 

func (m *GetDatasetRequest) GetDatasetId() string

func (*GetDatasetRequest) ProtoMessage 

func (*GetDatasetRequest) ProtoMessage()

func (*GetDatasetRequest) Reset 

func (m *GetDatasetRequest) Reset()

func (*GetDatasetRequest) String 

func (m *GetDatasetRequest) String() string

func (*GetDatasetRequest) XXX_DiscardUnknown 

func (m *GetDatasetRequest) XXX_DiscardUnknown()

func (*GetDatasetRequest) XXX_Marshal 

func (m *GetDatasetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*GetDatasetRequest) XXX_Merge 

func (m *GetDatasetRequest) XXX_Merge(src proto.Message)

func (*GetDatasetRequest) XXX_Size 

func (m *GetDatasetRequest) XXX_Size() int

func (*GetDatasetRequest) XXX_Unmarshal 

func (m *GetDatasetRequest) XXX_Unmarshal(b []byte) error

type GetReadGroupSetRequest 

type GetReadGroupSetRequest struct {
	// The ID of the read group set.
	ReadGroupSetId       string   `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*GetReadGroupSetRequest) Descriptor 

func (*GetReadGroupSetRequest) Descriptor() ([]byte, []int)

func (*GetReadGroupSetRequest) GetReadGroupSetId 

func (m *GetReadGroupSetRequest) GetReadGroupSetId() string

func (*GetReadGroupSetRequest) ProtoMessage 

func (*GetReadGroupSetRequest) ProtoMessage()

func (*GetReadGroupSetRequest) Reset 

func (m *GetReadGroupSetRequest) Reset()

func (*GetReadGroupSetRequest) String 

func (m *GetReadGroupSetRequest) String() string

func (*GetReadGroupSetRequest) XXX_DiscardUnknown 

func (m *GetReadGroupSetRequest) XXX_DiscardUnknown()

func (*GetReadGroupSetRequest) XXX_Marshal 

func (m *GetReadGroupSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*GetReadGroupSetRequest) XXX_Merge 

func (m *GetReadGroupSetRequest) XXX_Merge(src proto.Message)

func (*GetReadGroupSetRequest) XXX_Size 

func (m *GetReadGroupSetRequest) XXX_Size() int

func (*GetReadGroupSetRequest) XXX_Unmarshal 

func (m *GetReadGroupSetRequest) XXX_Unmarshal(b []byte) error

type GetReferenceRequest 

type GetReferenceRequest struct {
	// The ID of the reference.
	ReferenceId          string   `protobuf:"bytes,1,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*GetReferenceRequest) Descriptor 

func (*GetReferenceRequest) Descriptor() ([]byte, []int)

func (*GetReferenceRequest) GetReferenceId 

func (m *GetReferenceRequest) GetReferenceId() string

func (*GetReferenceRequest) ProtoMessage 

func (*GetReferenceRequest) ProtoMessage()

func (*GetReferenceRequest) Reset 

func (m *GetReferenceRequest) Reset()

func (*GetReferenceRequest) String 

func (m *GetReferenceRequest) String() string

func (*GetReferenceRequest) XXX_DiscardUnknown 

func (m *GetReferenceRequest) XXX_DiscardUnknown()

func (*GetReferenceRequest) XXX_Marshal 

func (m *GetReferenceRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*GetReferenceRequest) XXX_Merge 

func (m *GetReferenceRequest) XXX_Merge(src proto.Message)

func (*GetReferenceRequest) XXX_Size 

func (m *GetReferenceRequest) XXX_Size() int

func (*GetReferenceRequest) XXX_Unmarshal 

func (m *GetReferenceRequest) XXX_Unmarshal(b []byte) error

type GetReferenceSetRequest 

type GetReferenceSetRequest struct {
	// The ID of the reference set.
	ReferenceSetId       string   `protobuf:"bytes,1,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*GetReferenceSetRequest) Descriptor 

func (*GetReferenceSetRequest) Descriptor() ([]byte, []int)

func (*GetReferenceSetRequest) GetReferenceSetId 

func (m *GetReferenceSetRequest) GetReferenceSetId() string

func (*GetReferenceSetRequest) ProtoMessage 

func (*GetReferenceSetRequest) ProtoMessage()

func (*GetReferenceSetRequest) Reset 

func (m *GetReferenceSetRequest) Reset()

func (*GetReferenceSetRequest) String 

func (m *GetReferenceSetRequest) String() string

func (*GetReferenceSetRequest) XXX_DiscardUnknown 

func (m *GetReferenceSetRequest) XXX_DiscardUnknown()

func (*GetReferenceSetRequest) XXX_Marshal 

func (m *GetReferenceSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*GetReferenceSetRequest) XXX_Merge 

func (m *GetReferenceSetRequest) XXX_Merge(src proto.Message)

func (*GetReferenceSetRequest) XXX_Size 

func (m *GetReferenceSetRequest) XXX_Size() int

func (*GetReferenceSetRequest) XXX_Unmarshal 

func (m *GetReferenceSetRequest) XXX_Unmarshal(b []byte) error

type GetVariantRequest 

type GetVariantRequest struct {
	// The ID of the variant.
	VariantId            string   `protobuf:"bytes,1,opt,name=variant_id,json=variantId,proto3" json:"variant_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*GetVariantRequest) Descriptor 

func (*GetVariantRequest) Descriptor() ([]byte, []int)

func (*GetVariantRequest) GetVariantId 

func (m *GetVariantRequest) GetVariantId() string

func (*GetVariantRequest) ProtoMessage 

func (*GetVariantRequest) ProtoMessage()

func (*GetVariantRequest) Reset 

func (m *GetVariantRequest) Reset()

func (*GetVariantRequest) String 

func (m *GetVariantRequest) String() string

func (*GetVariantRequest) XXX_DiscardUnknown 

func (m *GetVariantRequest) XXX_DiscardUnknown()

func (*GetVariantRequest) XXX_Marshal 

func (m *GetVariantRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*GetVariantRequest) XXX_Merge 

func (m *GetVariantRequest) XXX_Merge(src proto.Message)

func (*GetVariantRequest) XXX_Size 

func (m *GetVariantRequest) XXX_Size() int

func (*GetVariantRequest) XXX_Unmarshal 

func (m *GetVariantRequest) XXX_Unmarshal(b []byte) error

type GetVariantSetRequest 

type GetVariantSetRequest struct {
	// Required. The ID of the variant set.
	VariantSetId         string   `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The variant set request.

func (*GetVariantSetRequest) Descriptor 

func (*GetVariantSetRequest) Descriptor() ([]byte, []int)

func (*GetVariantSetRequest) GetVariantSetId 

func (m *GetVariantSetRequest) GetVariantSetId() string

func (*GetVariantSetRequest) ProtoMessage 

func (*GetVariantSetRequest) ProtoMessage()

func (*GetVariantSetRequest) Reset 

func (m *GetVariantSetRequest) Reset()

func (*GetVariantSetRequest) String 

func (m *GetVariantSetRequest) String() string

func (*GetVariantSetRequest) XXX_DiscardUnknown 

func (m *GetVariantSetRequest) XXX_DiscardUnknown()

func (*GetVariantSetRequest) XXX_Marshal 

func (m *GetVariantSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*GetVariantSetRequest) XXX_Merge 

func (m *GetVariantSetRequest) XXX_Merge(src proto.Message)

func (*GetVariantSetRequest) XXX_Size 

func (m *GetVariantSetRequest) XXX_Size() int

func (*GetVariantSetRequest) XXX_Unmarshal 

func (m *GetVariantSetRequest) XXX_Unmarshal(b []byte) error

type ImportReadGroupSetsRequest 

type ImportReadGroupSetsRequest struct {
	// Required. The ID of the dataset these read group sets will belong to. The
	// caller must have WRITE permissions to this dataset.
	DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
	// The reference set to which the imported read group sets are aligned to, if
	// any. The reference names of this reference set must be a superset of those
	// found in the imported file headers. If no reference set id is provided, a
	// best effort is made to associate with a matching reference set.
	ReferenceSetId string `protobuf:"bytes,4,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
	// A list of URIs pointing at [BAM
	// files](https://samtools.github.io/hts-specs/SAMv1.pdf)
	// in Google Cloud Storage.
	// Those URIs can include wildcards (*), but do not add or remove
	// matching files before import has completed.
	//
	// Note that Google Cloud Storage object listing is only eventually
	// consistent: files added may be not be immediately visible to
	// everyone. Thus, if using a wildcard it is preferable not to start
	// the import immediately after the files are created.
	SourceUris []string `protobuf:"bytes,2,rep,name=source_uris,json=sourceUris,proto3" json:"source_uris,omitempty"`
	// The partition strategy describes how read groups are partitioned into read
	// group sets.
	PartitionStrategy    ImportReadGroupSetsRequest_PartitionStrategy `` /* 182-byte string literal not displayed */
	XXX_NoUnkeyedLiteral struct{}                                     `json:"-"`
	XXX_unrecognized     []byte                                       `json:"-"`
	XXX_sizecache        int32                                        `json:"-"`
}

The read group set import request.

func (*ImportReadGroupSetsRequest) Descriptor 

func (*ImportReadGroupSetsRequest) Descriptor() ([]byte, []int)

func (*ImportReadGroupSetsRequest) GetDatasetId 

func (m *ImportReadGroupSetsRequest) GetDatasetId() string

func (*ImportReadGroupSetsRequest) GetPartitionStrategy 

func (m *ImportReadGroupSetsRequest) GetPartitionStrategy() ImportReadGroupSetsRequest_PartitionStrategy

func (*ImportReadGroupSetsRequest) GetReferenceSetId 

func (m *ImportReadGroupSetsRequest) GetReferenceSetId() string

func (*ImportReadGroupSetsRequest) GetSourceUris 

func (m *ImportReadGroupSetsRequest) GetSourceUris() []string

func (*ImportReadGroupSetsRequest) ProtoMessage 

func (*ImportReadGroupSetsRequest) ProtoMessage()

func (*ImportReadGroupSetsRequest) Reset 

func (m *ImportReadGroupSetsRequest) Reset()

func (*ImportReadGroupSetsRequest) String 

func (m *ImportReadGroupSetsRequest) String() string

func (*ImportReadGroupSetsRequest) XXX_DiscardUnknown 

func (m *ImportReadGroupSetsRequest) XXX_DiscardUnknown()

func (*ImportReadGroupSetsRequest) XXX_Marshal 

func (m *ImportReadGroupSetsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ImportReadGroupSetsRequest) XXX_Merge 

func (m *ImportReadGroupSetsRequest) XXX_Merge(src proto.Message)

func (*ImportReadGroupSetsRequest) XXX_Size 

func (m *ImportReadGroupSetsRequest) XXX_Size() int

func (*ImportReadGroupSetsRequest) XXX_Unmarshal 

func (m *ImportReadGroupSetsRequest) XXX_Unmarshal(b []byte) error

type ImportReadGroupSetsRequest_PartitionStrategy 

type ImportReadGroupSetsRequest_PartitionStrategy int32
const (
	ImportReadGroupSetsRequest_PARTITION_STRATEGY_UNSPECIFIED ImportReadGroupSetsRequest_PartitionStrategy = 0
	// In most cases, this strategy yields one read group set per file. This is
	// the default behavior.
	//
	// Allocate one read group set per file per sample. For BAM files, read
	// groups are considered to share a sample if they have identical sample
	// names. Furthermore, all reads for each file which do not belong to a read
	// group, if any, will be grouped into a single read group set per-file.
	ImportReadGroupSetsRequest_PER_FILE_PER_SAMPLE ImportReadGroupSetsRequest_PartitionStrategy = 1
	// Includes all read groups in all imported files into a single read group
	// set. Requires that the headers for all imported files are equivalent. All
	// reads which do not belong to a read group, if any, will be grouped into a
	// separate read group set.
	ImportReadGroupSetsRequest_MERGE_ALL ImportReadGroupSetsRequest_PartitionStrategy = 2
)

func (ImportReadGroupSetsRequest_PartitionStrategy) EnumDescriptor 

func (ImportReadGroupSetsRequest_PartitionStrategy) EnumDescriptor() ([]byte, []int)

func (ImportReadGroupSetsRequest_PartitionStrategy) String 

func (x ImportReadGroupSetsRequest_PartitionStrategy) String() string

type ImportReadGroupSetsResponse 

type ImportReadGroupSetsResponse struct {
	// IDs of the read group sets that were created.
	ReadGroupSetIds      []string `protobuf:"bytes,1,rep,name=read_group_set_ids,json=readGroupSetIds,proto3" json:"read_group_set_ids,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The read group set import response.

func (*ImportReadGroupSetsResponse) Descriptor 

func (*ImportReadGroupSetsResponse) Descriptor() ([]byte, []int)

func (*ImportReadGroupSetsResponse) GetReadGroupSetIds 

func (m *ImportReadGroupSetsResponse) GetReadGroupSetIds() []string

func (*ImportReadGroupSetsResponse) ProtoMessage 

func (*ImportReadGroupSetsResponse) ProtoMessage()

func (*ImportReadGroupSetsResponse) Reset 

func (m *ImportReadGroupSetsResponse) Reset()

func (*ImportReadGroupSetsResponse) String 

func (m *ImportReadGroupSetsResponse) String() string

func (*ImportReadGroupSetsResponse) XXX_DiscardUnknown 

func (m *ImportReadGroupSetsResponse) XXX_DiscardUnknown()

func (*ImportReadGroupSetsResponse) XXX_Marshal 

func (m *ImportReadGroupSetsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ImportReadGroupSetsResponse) XXX_Merge 

func (m *ImportReadGroupSetsResponse) XXX_Merge(src proto.Message)

func (*ImportReadGroupSetsResponse) XXX_Size 

func (m *ImportReadGroupSetsResponse) XXX_Size() int

func (*ImportReadGroupSetsResponse) XXX_Unmarshal 

func (m *ImportReadGroupSetsResponse) XXX_Unmarshal(b []byte) error

type ImportVariantsRequest 

type ImportVariantsRequest struct {
	// Required. The variant set to which variant data should be imported.
	VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
	// A list of URIs referencing variant files in Google Cloud Storage. URIs can
	// include wildcards [as described
	// here](https://cloud.google.com/storage/docs/gsutil/addlhelp/WildcardNames).
	// Note that recursive wildcards ('**') are not supported.
	SourceUris []string `protobuf:"bytes,2,rep,name=source_uris,json=sourceUris,proto3" json:"source_uris,omitempty"`
	// The format of the variant data being imported. If unspecified, defaults to
	// to `VCF`.
	Format ImportVariantsRequest_Format `protobuf:"varint,3,opt,name=format,proto3,enum=google.genomics.v1.ImportVariantsRequest_Format" json:"format,omitempty"`
	// Convert reference names to the canonical representation.
	// hg19 haploytypes (those reference names containing "_hap")
	// are not modified in any way.
	// All other reference names are modified according to the following rules:
	// The reference name is capitalized.
	// The "chr" prefix is dropped for all autosomes and sex chromsomes.
	// For example "chr17" becomes "17" and "chrX" becomes "X".
	// All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
	NormalizeReferenceNames bool `` /* 133-byte string literal not displayed */
	// A mapping between info field keys and the InfoMergeOperations to
	// be performed on them. This is plumbed down to the MergeVariantRequests
	// generated by the resulting import job.
	InfoMergeConfig      map[string]InfoMergeOperation `` /* 240-byte string literal not displayed */
	XXX_NoUnkeyedLiteral struct{}                      `json:"-"`
	XXX_unrecognized     []byte                        `json:"-"`
	XXX_sizecache        int32                         `json:"-"`
}

The variant data import request.

func (*ImportVariantsRequest) Descriptor 

func (*ImportVariantsRequest) Descriptor() ([]byte, []int)

func (*ImportVariantsRequest) GetFormat 

func (m *ImportVariantsRequest) GetFormat() ImportVariantsRequest_Format

func (*ImportVariantsRequest) GetInfoMergeConfig 

func (m *ImportVariantsRequest) GetInfoMergeConfig() map[string]InfoMergeOperation

func (*ImportVariantsRequest) GetNormalizeReferenceNames 

func (m *ImportVariantsRequest) GetNormalizeReferenceNames() bool

func (*ImportVariantsRequest) GetSourceUris 

func (m *ImportVariantsRequest) GetSourceUris() []string

func (*ImportVariantsRequest) GetVariantSetId 

func (m *ImportVariantsRequest) GetVariantSetId() string

func (*ImportVariantsRequest) ProtoMessage 

func (*ImportVariantsRequest) ProtoMessage()

func (*ImportVariantsRequest) Reset 

func (m *ImportVariantsRequest) Reset()

func (*ImportVariantsRequest) String 

func (m *ImportVariantsRequest) String() string

func (*ImportVariantsRequest) XXX_DiscardUnknown 

func (m *ImportVariantsRequest) XXX_DiscardUnknown()

func (*ImportVariantsRequest) XXX_Marshal 

func (m *ImportVariantsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ImportVariantsRequest) XXX_Merge 

func (m *ImportVariantsRequest) XXX_Merge(src proto.Message)

func (*ImportVariantsRequest) XXX_Size 

func (m *ImportVariantsRequest) XXX_Size() int

func (*ImportVariantsRequest) XXX_Unmarshal 

func (m *ImportVariantsRequest) XXX_Unmarshal(b []byte) error

type ImportVariantsRequest_Format 

type ImportVariantsRequest_Format int32
const (
	ImportVariantsRequest_FORMAT_UNSPECIFIED ImportVariantsRequest_Format = 0
	// VCF (Variant Call Format). The VCF files may be gzip compressed. gVCF is
	// also supported.
	ImportVariantsRequest_FORMAT_VCF ImportVariantsRequest_Format = 1
	// Complete Genomics masterVarBeta format. The masterVarBeta files may
	// be bzip2 compressed.
	ImportVariantsRequest_FORMAT_COMPLETE_GENOMICS ImportVariantsRequest_Format = 2
)

func (ImportVariantsRequest_Format) EnumDescriptor 

func (ImportVariantsRequest_Format) EnumDescriptor() ([]byte, []int)

func (ImportVariantsRequest_Format) String 

func (x ImportVariantsRequest_Format) String() string

type ImportVariantsResponse 

type ImportVariantsResponse struct {
	// IDs of the call sets created during the import.
	CallSetIds           []string `protobuf:"bytes,1,rep,name=call_set_ids,json=callSetIds,proto3" json:"call_set_ids,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The variant data import response.

func (*ImportVariantsResponse) Descriptor 

func (*ImportVariantsResponse) Descriptor() ([]byte, []int)

func (*ImportVariantsResponse) GetCallSetIds 

func (m *ImportVariantsResponse) GetCallSetIds() []string

func (*ImportVariantsResponse) ProtoMessage 

func (*ImportVariantsResponse) ProtoMessage()

func (*ImportVariantsResponse) Reset 

func (m *ImportVariantsResponse) Reset()

func (*ImportVariantsResponse) String 

func (m *ImportVariantsResponse) String() string

func (*ImportVariantsResponse) XXX_DiscardUnknown 

func (m *ImportVariantsResponse) XXX_DiscardUnknown()

func (*ImportVariantsResponse) XXX_Marshal 

func (m *ImportVariantsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ImportVariantsResponse) XXX_Merge 

func (m *ImportVariantsResponse) XXX_Merge(src proto.Message)

func (*ImportVariantsResponse) XXX_Size 

func (m *ImportVariantsResponse) XXX_Size() int

func (*ImportVariantsResponse) XXX_Unmarshal 

func (m *ImportVariantsResponse) XXX_Unmarshal(b []byte) error

type InfoMergeOperation 

type InfoMergeOperation int32

Operations to be performed during import on Variant info fields. These operations are set for each info field in the info_merge_config map of ImportVariantsRequest, which is plumbed down to the MergeVariantRequests generated by the import job. 

const (
	InfoMergeOperation_INFO_MERGE_OPERATION_UNSPECIFIED InfoMergeOperation = 0
	// By default, Variant info fields are persisted if the Variant doesn't
	// already exist in the variantset.  If the Variant is equivalent to a
	// Variant already in the variantset, the incoming Variant's info field
	// is ignored in favor of that of the already persisted Variant.
	InfoMergeOperation_IGNORE_NEW InfoMergeOperation = 1
	// This operation removes an info field from the incoming Variant
	// and persists this info field in each of the incoming Variant's Calls.
	InfoMergeOperation_MOVE_TO_CALLS InfoMergeOperation = 2
)

func (InfoMergeOperation) EnumDescriptor 

func (InfoMergeOperation) EnumDescriptor() ([]byte, []int)

func (InfoMergeOperation) String 

func (x InfoMergeOperation) String() string

type LinearAlignment 

type LinearAlignment struct {
	// The position of this alignment.
	Position *Position `protobuf:"bytes,1,opt,name=position,proto3" json:"position,omitempty"`
	// The mapping quality of this alignment. Represents how likely
	// the read maps to this position as opposed to other locations.
	//
	// Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to
	// the nearest integer.
	MappingQuality int32 `protobuf:"varint,2,opt,name=mapping_quality,json=mappingQuality,proto3" json:"mapping_quality,omitempty"`
	// Represents the local alignment of this sequence (alignment matches, indels,
	// etc) against the reference.
	Cigar                []*CigarUnit `protobuf:"bytes,3,rep,name=cigar,proto3" json:"cigar,omitempty"`
	XXX_NoUnkeyedLiteral struct{}     `json:"-"`
	XXX_unrecognized     []byte       `json:"-"`
	XXX_sizecache        int32        `json:"-"`
}

A linear alignment can be represented by one CIGAR string. Describes the mapped position and local alignment of the read to the reference.

func (*LinearAlignment) Descriptor 

func (*LinearAlignment) Descriptor() ([]byte, []int)

func (*LinearAlignment) GetCigar 

func (m *LinearAlignment) GetCigar() []*CigarUnit

func (*LinearAlignment) GetMappingQuality 

func (m *LinearAlignment) GetMappingQuality() int32

func (*LinearAlignment) GetPosition 

func (m *LinearAlignment) GetPosition() *Position

func (*LinearAlignment) ProtoMessage 

func (*LinearAlignment) ProtoMessage()

func (*LinearAlignment) Reset 

func (m *LinearAlignment) Reset()

func (*LinearAlignment) String 

func (m *LinearAlignment) String() string

func (*LinearAlignment) XXX_DiscardUnknown 

func (m *LinearAlignment) XXX_DiscardUnknown()

func (*LinearAlignment) XXX_Marshal 

func (m *LinearAlignment) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*LinearAlignment) XXX_Merge 

func (m *LinearAlignment) XXX_Merge(src proto.Message)

func (*LinearAlignment) XXX_Size 

func (m *LinearAlignment) XXX_Size() int

func (*LinearAlignment) XXX_Unmarshal 

func (m *LinearAlignment) XXX_Unmarshal(b []byte) error

type ListBasesRequest 

type ListBasesRequest struct {
	// The ID of the reference.
	ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
	// The start position (0-based) of this query. Defaults to 0.
	Start int64 `protobuf:"varint,2,opt,name=start,proto3" json:"start,omitempty"`
	// The end position (0-based, exclusive) of this query. Defaults to the length
	// of this reference.
	End int64 `protobuf:"varint,3,opt,name=end,proto3" json:"end,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// To get the next page of results, set this parameter to the value of
	// `nextPageToken` from the previous response.
	PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
	// The maximum number of bases to return in a single page. If unspecified,
	// defaults to 200Kbp (kilo base pairs). The maximum value is 10Mbp (mega base
	// pairs).
	PageSize             int32    `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*ListBasesRequest) Descriptor 

func (*ListBasesRequest) Descriptor() ([]byte, []int)

func (*ListBasesRequest) GetEnd 

func (m *ListBasesRequest) GetEnd() int64

func (*ListBasesRequest) GetPageSize 

func (m *ListBasesRequest) GetPageSize() int32

func (*ListBasesRequest) GetPageToken 

func (m *ListBasesRequest) GetPageToken() string

func (*ListBasesRequest) GetReferenceId 

func (m *ListBasesRequest) GetReferenceId() string

func (*ListBasesRequest) GetStart 

func (m *ListBasesRequest) GetStart() int64

func (*ListBasesRequest) ProtoMessage 

func (*ListBasesRequest) ProtoMessage()

func (*ListBasesRequest) Reset 

func (m *ListBasesRequest) Reset()

func (*ListBasesRequest) String 

func (m *ListBasesRequest) String() string

func (*ListBasesRequest) XXX_DiscardUnknown 

func (m *ListBasesRequest) XXX_DiscardUnknown()

func (*ListBasesRequest) XXX_Marshal 

func (m *ListBasesRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ListBasesRequest) XXX_Merge 

func (m *ListBasesRequest) XXX_Merge(src proto.Message)

func (*ListBasesRequest) XXX_Size 

func (m *ListBasesRequest) XXX_Size() int

func (*ListBasesRequest) XXX_Unmarshal 

func (m *ListBasesRequest) XXX_Unmarshal(b []byte) error

type ListBasesResponse 

type ListBasesResponse struct {
	// The offset position (0-based) of the given `sequence` from the
	// start of this `Reference`. This value will differ for each page
	// in a paginated request.
	Offset int64 `protobuf:"varint,1,opt,name=offset,proto3" json:"offset,omitempty"`
	// A substring of the bases that make up this reference.
	Sequence string `protobuf:"bytes,2,opt,name=sequence,proto3" json:"sequence,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// Provide this value in a subsequent request to return the next page of
	// results. This field will be empty if there aren't any additional results.
	NextPageToken        string   `protobuf:"bytes,3,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*ListBasesResponse) Descriptor 

func (*ListBasesResponse) Descriptor() ([]byte, []int)

func (*ListBasesResponse) GetNextPageToken 

func (m *ListBasesResponse) GetNextPageToken() string

func (*ListBasesResponse) GetOffset 

func (m *ListBasesResponse) GetOffset() int64

func (*ListBasesResponse) GetSequence 

func (m *ListBasesResponse) GetSequence() string

func (*ListBasesResponse) ProtoMessage 

func (*ListBasesResponse) ProtoMessage()

func (*ListBasesResponse) Reset 

func (m *ListBasesResponse) Reset()

func (*ListBasesResponse) String 

func (m *ListBasesResponse) String() string

func (*ListBasesResponse) XXX_DiscardUnknown 

func (m *ListBasesResponse) XXX_DiscardUnknown()

func (*ListBasesResponse) XXX_Marshal 

func (m *ListBasesResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ListBasesResponse) XXX_Merge 

func (m *ListBasesResponse) XXX_Merge(src proto.Message)

func (*ListBasesResponse) XXX_Size 

func (m *ListBasesResponse) XXX_Size() int

func (*ListBasesResponse) XXX_Unmarshal 

func (m *ListBasesResponse) XXX_Unmarshal(b []byte) error

type ListCoverageBucketsRequest 

type ListCoverageBucketsRequest struct {
	// Required. The ID of the read group set over which coverage is requested.
	ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
	// The name of the reference to query, within the reference set associated
	// with this query. Optional.
	ReferenceName string `protobuf:"bytes,3,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
	// The start position of the range on the reference, 0-based inclusive. If
	// specified, `referenceName` must also be specified. Defaults to 0.
	Start int64 `protobuf:"varint,4,opt,name=start,proto3" json:"start,omitempty"`
	// The end position of the range on the reference, 0-based exclusive. If
	// specified, `referenceName` must also be specified. If unset or 0, defaults
	// to the length of the reference.
	End int64 `protobuf:"varint,5,opt,name=end,proto3" json:"end,omitempty"`
	// The desired width of each reported coverage bucket in base pairs. This
	// will be rounded down to the nearest precomputed bucket width; the value
	// of which is returned as `bucketWidth` in the response. Defaults
	// to infinity (each bucket spans an entire reference sequence) or the length
	// of the target range, if specified. The smallest precomputed
	// `bucketWidth` is currently 2048 base pairs; this is subject to
	// change.
	TargetBucketWidth int64 `protobuf:"varint,6,opt,name=target_bucket_width,json=targetBucketWidth,proto3" json:"target_bucket_width,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// To get the next page of results, set this parameter to the value of
	// `nextPageToken` from the previous response.
	PageToken string `protobuf:"bytes,7,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
	// The maximum number of results to return in a single page. If unspecified,
	// defaults to 1024. The maximum value is 2048.
	PageSize             int32    `protobuf:"varint,8,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*ListCoverageBucketsRequest) Descriptor 

func (*ListCoverageBucketsRequest) Descriptor() ([]byte, []int)

func (*ListCoverageBucketsRequest) GetEnd 

func (m *ListCoverageBucketsRequest) GetEnd() int64

func (*ListCoverageBucketsRequest) GetPageSize 

func (m *ListCoverageBucketsRequest) GetPageSize() int32

func (*ListCoverageBucketsRequest) GetPageToken 

func (m *ListCoverageBucketsRequest) GetPageToken() string

func (*ListCoverageBucketsRequest) GetReadGroupSetId 

func (m *ListCoverageBucketsRequest) GetReadGroupSetId() string

func (*ListCoverageBucketsRequest) GetReferenceName 

func (m *ListCoverageBucketsRequest) GetReferenceName() string

func (*ListCoverageBucketsRequest) GetStart 

func (m *ListCoverageBucketsRequest) GetStart() int64

func (*ListCoverageBucketsRequest) GetTargetBucketWidth 

func (m *ListCoverageBucketsRequest) GetTargetBucketWidth() int64

func (*ListCoverageBucketsRequest) ProtoMessage 

func (*ListCoverageBucketsRequest) ProtoMessage()

func (*ListCoverageBucketsRequest) Reset 

func (m *ListCoverageBucketsRequest) Reset()

func (*ListCoverageBucketsRequest) String 

func (m *ListCoverageBucketsRequest) String() string

func (*ListCoverageBucketsRequest) XXX_DiscardUnknown 

func (m *ListCoverageBucketsRequest) XXX_DiscardUnknown()

func (*ListCoverageBucketsRequest) XXX_Marshal 

func (m *ListCoverageBucketsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ListCoverageBucketsRequest) XXX_Merge 

func (m *ListCoverageBucketsRequest) XXX_Merge(src proto.Message)

func (*ListCoverageBucketsRequest) XXX_Size 

func (m *ListCoverageBucketsRequest) XXX_Size() int

func (*ListCoverageBucketsRequest) XXX_Unmarshal 

func (m *ListCoverageBucketsRequest) XXX_Unmarshal(b []byte) error

type ListCoverageBucketsResponse 

type ListCoverageBucketsResponse struct {
	// The length of each coverage bucket in base pairs. Note that buckets at the
	// end of a reference sequence may be shorter. This value is omitted if the
	// bucket width is infinity (the default behaviour, with no range or
	// `targetBucketWidth`).
	BucketWidth int64 `protobuf:"varint,1,opt,name=bucket_width,json=bucketWidth,proto3" json:"bucket_width,omitempty"`
	// The coverage buckets. The list of buckets is sparse; a bucket with 0
	// overlapping reads is not returned. A bucket never crosses more than one
	// reference sequence. Each bucket has width `bucketWidth`, unless
	// its end is the end of the reference sequence.
	CoverageBuckets []*CoverageBucket `protobuf:"bytes,2,rep,name=coverage_buckets,json=coverageBuckets,proto3" json:"coverage_buckets,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// Provide this value in a subsequent request to return the next page of
	// results. This field will be empty if there aren't any additional results.
	NextPageToken        string   `protobuf:"bytes,3,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*ListCoverageBucketsResponse) Descriptor 

func (*ListCoverageBucketsResponse) Descriptor() ([]byte, []int)

func (*ListCoverageBucketsResponse) GetBucketWidth 

func (m *ListCoverageBucketsResponse) GetBucketWidth() int64

func (*ListCoverageBucketsResponse) GetCoverageBuckets 

func (m *ListCoverageBucketsResponse) GetCoverageBuckets() []*CoverageBucket

func (*ListCoverageBucketsResponse) GetNextPageToken 

func (m *ListCoverageBucketsResponse) GetNextPageToken() string

func (*ListCoverageBucketsResponse) ProtoMessage 

func (*ListCoverageBucketsResponse) ProtoMessage()

func (*ListCoverageBucketsResponse) Reset 

func (m *ListCoverageBucketsResponse) Reset()

func (*ListCoverageBucketsResponse) String 

func (m *ListCoverageBucketsResponse) String() string

func (*ListCoverageBucketsResponse) XXX_DiscardUnknown 

func (m *ListCoverageBucketsResponse) XXX_DiscardUnknown()

func (*ListCoverageBucketsResponse) XXX_Marshal 

func (m *ListCoverageBucketsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ListCoverageBucketsResponse) XXX_Merge 

func (m *ListCoverageBucketsResponse) XXX_Merge(src proto.Message)

func (*ListCoverageBucketsResponse) XXX_Size 

func (m *ListCoverageBucketsResponse) XXX_Size() int

func (*ListCoverageBucketsResponse) XXX_Unmarshal 

func (m *ListCoverageBucketsResponse) XXX_Unmarshal(b []byte) error

type ListDatasetsRequest 

type ListDatasetsRequest struct {
	// Required. The Google Cloud project ID to list datasets for.
	ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
	// The maximum number of results to return in a single page. If unspecified,
	// defaults to 50. The maximum value is 1024.
	PageSize int32 `protobuf:"varint,2,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// To get the next page of results, set this parameter to the value of
	// `nextPageToken` from the previous response.
	PageToken            string   `protobuf:"bytes,3,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The dataset list request.

func (*ListDatasetsRequest) Descriptor 

func (*ListDatasetsRequest) Descriptor() ([]byte, []int)

func (*ListDatasetsRequest) GetPageSize 

func (m *ListDatasetsRequest) GetPageSize() int32

func (*ListDatasetsRequest) GetPageToken 

func (m *ListDatasetsRequest) GetPageToken() string

func (*ListDatasetsRequest) GetProjectId 

func (m *ListDatasetsRequest) GetProjectId() string

func (*ListDatasetsRequest) ProtoMessage 

func (*ListDatasetsRequest) ProtoMessage()

func (*ListDatasetsRequest) Reset 

func (m *ListDatasetsRequest) Reset()

func (*ListDatasetsRequest) String 

func (m *ListDatasetsRequest) String() string

func (*ListDatasetsRequest) XXX_DiscardUnknown 

func (m *ListDatasetsRequest) XXX_DiscardUnknown()

func (*ListDatasetsRequest) XXX_Marshal 

func (m *ListDatasetsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ListDatasetsRequest) XXX_Merge 

func (m *ListDatasetsRequest) XXX_Merge(src proto.Message)

func (*ListDatasetsRequest) XXX_Size 

func (m *ListDatasetsRequest) XXX_Size() int

func (*ListDatasetsRequest) XXX_Unmarshal 

func (m *ListDatasetsRequest) XXX_Unmarshal(b []byte) error

type ListDatasetsResponse 

type ListDatasetsResponse struct {
	// The list of matching Datasets.
	Datasets []*Dataset `protobuf:"bytes,1,rep,name=datasets,proto3" json:"datasets,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// Provide this value in a subsequent request to return the next page of
	// results. This field will be empty if there aren't any additional results.
	NextPageToken        string   `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The dataset list response.

func (*ListDatasetsResponse) Descriptor 

func (*ListDatasetsResponse) Descriptor() ([]byte, []int)

func (*ListDatasetsResponse) GetDatasets 

func (m *ListDatasetsResponse) GetDatasets() []*Dataset

func (*ListDatasetsResponse) GetNextPageToken 

func (m *ListDatasetsResponse) GetNextPageToken() string

func (*ListDatasetsResponse) ProtoMessage 

func (*ListDatasetsResponse) ProtoMessage()

func (*ListDatasetsResponse) Reset 

func (m *ListDatasetsResponse) Reset()

func (*ListDatasetsResponse) String 

func (m *ListDatasetsResponse) String() string

func (*ListDatasetsResponse) XXX_DiscardUnknown 

func (m *ListDatasetsResponse) XXX_DiscardUnknown()

func (*ListDatasetsResponse) XXX_Marshal 

func (m *ListDatasetsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ListDatasetsResponse) XXX_Merge 

func (m *ListDatasetsResponse) XXX_Merge(src proto.Message)

func (*ListDatasetsResponse) XXX_Size 

func (m *ListDatasetsResponse) XXX_Size() int

func (*ListDatasetsResponse) XXX_Unmarshal 

func (m *ListDatasetsResponse) XXX_Unmarshal(b []byte) error

type MergeVariantsRequest 

type MergeVariantsRequest struct {
	// The destination variant set.
	VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
	// The variants to be merged with existing variants.
	Variants []*Variant `protobuf:"bytes,2,rep,name=variants,proto3" json:"variants,omitempty"`
	// A mapping between info field keys and the InfoMergeOperations to
	// be performed on them.
	InfoMergeConfig      map[string]InfoMergeOperation `` /* 240-byte string literal not displayed */
	XXX_NoUnkeyedLiteral struct{}                      `json:"-"`
	XXX_unrecognized     []byte                        `json:"-"`
	XXX_sizecache        int32                         `json:"-"`
}

func (*MergeVariantsRequest) Descriptor 

func (*MergeVariantsRequest) Descriptor() ([]byte, []int)

func (*MergeVariantsRequest) GetInfoMergeConfig 

func (m *MergeVariantsRequest) GetInfoMergeConfig() map[string]InfoMergeOperation

func (*MergeVariantsRequest) GetVariantSetId 

func (m *MergeVariantsRequest) GetVariantSetId() string

func (*MergeVariantsRequest) GetVariants 

func (m *MergeVariantsRequest) GetVariants() []*Variant

func (*MergeVariantsRequest) ProtoMessage 

func (*MergeVariantsRequest) ProtoMessage()

func (*MergeVariantsRequest) Reset 

func (m *MergeVariantsRequest) Reset()

func (*MergeVariantsRequest) String 

func (m *MergeVariantsRequest) String() string

func (*MergeVariantsRequest) XXX_DiscardUnknown 

func (m *MergeVariantsRequest) XXX_DiscardUnknown()

func (*MergeVariantsRequest) XXX_Marshal 

func (m *MergeVariantsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*MergeVariantsRequest) XXX_Merge 

func (m *MergeVariantsRequest) XXX_Merge(src proto.Message)

func (*MergeVariantsRequest) XXX_Size 

func (m *MergeVariantsRequest) XXX_Size() int

func (*MergeVariantsRequest) XXX_Unmarshal 

func (m *MergeVariantsRequest) XXX_Unmarshal(b []byte) error

type OperationEvent 

type OperationEvent struct {
	// Optional time of when event started.
	StartTime *timestamp.Timestamp `protobuf:"bytes,1,opt,name=start_time,json=startTime,proto3" json:"start_time,omitempty"`
	// Optional time of when event finished. An event can have a start time and no
	// finish time. If an event has a finish time, there must be a start time.
	EndTime *timestamp.Timestamp `protobuf:"bytes,2,opt,name=end_time,json=endTime,proto3" json:"end_time,omitempty"`
	// Required description of event.
	Description          string   `protobuf:"bytes,3,opt,name=description,proto3" json:"description,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

An event that occurred during an [Operation][google.longrunning.Operation].

func (*OperationEvent) Descriptor 

func (*OperationEvent) Descriptor() ([]byte, []int)

func (*OperationEvent) GetDescription 

func (m *OperationEvent) GetDescription() string

func (*OperationEvent) GetEndTime 

func (m *OperationEvent) GetEndTime() *timestamp.Timestamp

func (*OperationEvent) GetStartTime 

func (m *OperationEvent) GetStartTime() *timestamp.Timestamp

func (*OperationEvent) ProtoMessage 

func (*OperationEvent) ProtoMessage()

func (*OperationEvent) Reset 

func (m *OperationEvent) Reset()

func (*OperationEvent) String 

func (m *OperationEvent) String() string

func (*OperationEvent) XXX_DiscardUnknown 

func (m *OperationEvent) XXX_DiscardUnknown()

func (*OperationEvent) XXX_Marshal 

func (m *OperationEvent) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*OperationEvent) XXX_Merge 

func (m *OperationEvent) XXX_Merge(src proto.Message)

func (*OperationEvent) XXX_Size 

func (m *OperationEvent) XXX_Size() int

func (*OperationEvent) XXX_Unmarshal 

func (m *OperationEvent) XXX_Unmarshal(b []byte) error

type OperationMetadata 

type OperationMetadata struct {
	// The Google Cloud Project in which the job is scoped.
	ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
	// The time at which the job was submitted to the Genomics service.
	CreateTime *timestamp.Timestamp `protobuf:"bytes,2,opt,name=create_time,json=createTime,proto3" json:"create_time,omitempty"`
	// The time at which the job began to run.
	StartTime *timestamp.Timestamp `protobuf:"bytes,3,opt,name=start_time,json=startTime,proto3" json:"start_time,omitempty"`
	// The time at which the job stopped running.
	EndTime *timestamp.Timestamp `protobuf:"bytes,4,opt,name=end_time,json=endTime,proto3" json:"end_time,omitempty"`
	// The original request that started the operation. Note that this will be in
	// current version of the API. If the operation was started with v1beta2 API
	// and a GetOperation is performed on v1 API, a v1 request will be returned.
	Request *any.Any `protobuf:"bytes,5,opt,name=request,proto3" json:"request,omitempty"`
	// Optional event messages that were generated during the job's execution.
	// This also contains any warnings that were generated during import
	// or export.
	Events []*OperationEvent `protobuf:"bytes,6,rep,name=events,proto3" json:"events,omitempty"`
	// This field is deprecated. Use `labels` instead. Optionally provided by the
	// caller when submitting the request that creates the operation.
	ClientId string `protobuf:"bytes,7,opt,name=client_id,json=clientId,proto3" json:"client_id,omitempty"`
	// Runtime metadata on this Operation.
	RuntimeMetadata *any.Any `protobuf:"bytes,8,opt,name=runtime_metadata,json=runtimeMetadata,proto3" json:"runtime_metadata,omitempty"`
	// Optionally provided by the caller when submitting the request that creates
	// the operation.
	Labels               map[string]string `` /* 153-byte string literal not displayed */
	XXX_NoUnkeyedLiteral struct{}          `json:"-"`
	XXX_unrecognized     []byte            `json:"-"`
	XXX_sizecache        int32             `json:"-"`
}

Metadata describing an [Operation][google.longrunning.Operation].

func (*OperationMetadata) Descriptor 

func (*OperationMetadata) Descriptor() ([]byte, []int)

func (*OperationMetadata) GetClientId 

func (m *OperationMetadata) GetClientId() string

func (*OperationMetadata) GetCreateTime 

func (m *OperationMetadata) GetCreateTime() *timestamp.Timestamp

func (*OperationMetadata) GetEndTime 

func (m *OperationMetadata) GetEndTime() *timestamp.Timestamp

func (*OperationMetadata) GetEvents 

func (m *OperationMetadata) GetEvents() []*OperationEvent

func (*OperationMetadata) GetLabels 

func (m *OperationMetadata) GetLabels() map[string]string

func (*OperationMetadata) GetProjectId 

func (m *OperationMetadata) GetProjectId() string

func (*OperationMetadata) GetRequest 

func (m *OperationMetadata) GetRequest() *any.Any

func (*OperationMetadata) GetRuntimeMetadata 

func (m *OperationMetadata) GetRuntimeMetadata() *any.Any

func (*OperationMetadata) GetStartTime 

func (m *OperationMetadata) GetStartTime() *timestamp.Timestamp

func (*OperationMetadata) ProtoMessage 

func (*OperationMetadata) ProtoMessage()

func (*OperationMetadata) Reset 

func (m *OperationMetadata) Reset()

func (*OperationMetadata) String 

func (m *OperationMetadata) String() string

func (*OperationMetadata) XXX_DiscardUnknown 

func (m *OperationMetadata) XXX_DiscardUnknown()

func (*OperationMetadata) XXX_Marshal 

func (m *OperationMetadata) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*OperationMetadata) XXX_Merge 

func (m *OperationMetadata) XXX_Merge(src proto.Message)

func (*OperationMetadata) XXX_Size 

func (m *OperationMetadata) XXX_Size() int

func (*OperationMetadata) XXX_Unmarshal 

func (m *OperationMetadata) XXX_Unmarshal(b []byte) error

type Position 

type Position struct {
	// The name of the reference in whatever reference set is being used.
	ReferenceName string `protobuf:"bytes,1,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
	// The 0-based offset from the start of the forward strand for that reference.
	Position int64 `protobuf:"varint,2,opt,name=position,proto3" json:"position,omitempty"`
	// Whether this position is on the reverse strand, as opposed to the forward
	// strand.
	ReverseStrand        bool     `protobuf:"varint,3,opt,name=reverse_strand,json=reverseStrand,proto3" json:"reverse_strand,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

An abstraction for referring to a genomic position, in relation to some already known reference. For now, represents a genomic position as a reference name, a base number on that reference (0-based), and a determination of forward or reverse strand.

func (*Position) Descriptor 

func (*Position) Descriptor() ([]byte, []int)

func (*Position) GetPosition 

func (m *Position) GetPosition() int64

func (*Position) GetReferenceName 

func (m *Position) GetReferenceName() string

func (*Position) GetReverseStrand 

func (m *Position) GetReverseStrand() bool

func (*Position) ProtoMessage 

func (*Position) ProtoMessage()

func (*Position) Reset 

func (m *Position) Reset()

func (*Position) String 

func (m *Position) String() string

func (*Position) XXX_DiscardUnknown 

func (m *Position) XXX_DiscardUnknown()

func (*Position) XXX_Marshal 

func (m *Position) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*Position) XXX_Merge 

func (m *Position) XXX_Merge(src proto.Message)

func (*Position) XXX_Size 

func (m *Position) XXX_Size() int

func (*Position) XXX_Unmarshal 

func (m *Position) XXX_Unmarshal(b []byte) error

type Range 

type Range struct {
	// The reference sequence name, for example `chr1`,
	// `1`, or `chrX`.
	ReferenceName string `protobuf:"bytes,1,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
	// The start position of the range on the reference, 0-based inclusive.
	Start int64 `protobuf:"varint,2,opt,name=start,proto3" json:"start,omitempty"`
	// The end position of the range on the reference, 0-based exclusive.
	End                  int64    `protobuf:"varint,3,opt,name=end,proto3" json:"end,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

A 0-based half-open genomic coordinate range for search requests.

func (*Range) Descriptor 

func (*Range) Descriptor() ([]byte, []int)

func (*Range) GetEnd 

func (m *Range) GetEnd() int64

func (*Range) GetReferenceName 

func (m *Range) GetReferenceName() string

func (*Range) GetStart 

func (m *Range) GetStart() int64

func (*Range) ProtoMessage 

func (*Range) ProtoMessage()

func (*Range) Reset 

func (m *Range) Reset()

func (*Range) String 

func (m *Range) String() string

func (*Range) XXX_DiscardUnknown 

func (m *Range) XXX_DiscardUnknown()

func (*Range) XXX_Marshal 

func (m *Range) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*Range) XXX_Merge 

func (m *Range) XXX_Merge(src proto.Message)

func (*Range) XXX_Size 

func (m *Range) XXX_Size() int

func (*Range) XXX_Unmarshal 

func (m *Range) XXX_Unmarshal(b []byte) error

type Read 

type Read struct {
	// The server-generated read ID, unique across all reads. This is different
	// from the `fragmentName`.
	Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// The ID of the read group this read belongs to. A read belongs to exactly
	// one read group. This is a server-generated ID which is distinct from SAM's
	// RG tag (for that value, see
	// [ReadGroup.name][google.genomics.v1.ReadGroup.name]).
	ReadGroupId string `protobuf:"bytes,2,opt,name=read_group_id,json=readGroupId,proto3" json:"read_group_id,omitempty"`
	// The ID of the read group set this read belongs to. A read belongs to
	// exactly one read group set.
	ReadGroupSetId string `protobuf:"bytes,3,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
	// The fragment name. Equivalent to QNAME (query template name) in SAM.
	FragmentName string `protobuf:"bytes,4,opt,name=fragment_name,json=fragmentName,proto3" json:"fragment_name,omitempty"`
	// The orientation and the distance between reads from the fragment are
	// consistent with the sequencing protocol (SAM flag 0x2).
	ProperPlacement bool `protobuf:"varint,5,opt,name=proper_placement,json=properPlacement,proto3" json:"proper_placement,omitempty"`
	// The fragment is a PCR or optical duplicate (SAM flag 0x400).
	DuplicateFragment bool `protobuf:"varint,6,opt,name=duplicate_fragment,json=duplicateFragment,proto3" json:"duplicate_fragment,omitempty"`
	// The observed length of the fragment, equivalent to TLEN in SAM.
	FragmentLength int32 `protobuf:"varint,7,opt,name=fragment_length,json=fragmentLength,proto3" json:"fragment_length,omitempty"`
	// The read number in sequencing. 0-based and less than numberReads. This
	// field replaces SAM flag 0x40 and 0x80.
	ReadNumber int32 `protobuf:"varint,8,opt,name=read_number,json=readNumber,proto3" json:"read_number,omitempty"`
	// The number of reads in the fragment (extension to SAM flag 0x1).
	NumberReads int32 `protobuf:"varint,9,opt,name=number_reads,json=numberReads,proto3" json:"number_reads,omitempty"`
	// Whether this read did not pass filters, such as platform or vendor quality
	// controls (SAM flag 0x200).
	FailedVendorQualityChecks bool `` /* 142-byte string literal not displayed */
	// The linear alignment for this alignment record. This field is null for
	// unmapped reads.
	Alignment *LinearAlignment `protobuf:"bytes,11,opt,name=alignment,proto3" json:"alignment,omitempty"`
	// Whether this alignment is secondary. Equivalent to SAM flag 0x100.
	// A secondary alignment represents an alternative to the primary alignment
	// for this read. Aligners may return secondary alignments if a read can map
	// ambiguously to multiple coordinates in the genome. By convention, each read
	// has one and only one alignment where both `secondaryAlignment`
	// and `supplementaryAlignment` are false.
	SecondaryAlignment bool `protobuf:"varint,12,opt,name=secondary_alignment,json=secondaryAlignment,proto3" json:"secondary_alignment,omitempty"`
	// Whether this alignment is supplementary. Equivalent to SAM flag 0x800.
	// Supplementary alignments are used in the representation of a chimeric
	// alignment. In a chimeric alignment, a read is split into multiple
	// linear alignments that map to different reference contigs. The first
	// linear alignment in the read will be designated as the representative
	// alignment; the remaining linear alignments will be designated as
	// supplementary alignments. These alignments may have different mapping
	// quality scores. In each linear alignment in a chimeric alignment, the read
	// will be hard clipped. The `alignedSequence` and
	// `alignedQuality` fields in the alignment record will only
	// represent the bases for its respective linear alignment.
	SupplementaryAlignment bool `` /* 129-byte string literal not displayed */
	// The bases of the read sequence contained in this alignment record,
	// **without CIGAR operations applied** (equivalent to SEQ in SAM).
	// `alignedSequence` and `alignedQuality` may be
	// shorter than the full read sequence and quality. This will occur if the
	// alignment is part of a chimeric alignment, or if the read was trimmed. When
	// this occurs, the CIGAR for this read will begin/end with a hard clip
	// operator that will indicate the length of the excised sequence.
	AlignedSequence string `protobuf:"bytes,14,opt,name=aligned_sequence,json=alignedSequence,proto3" json:"aligned_sequence,omitempty"`
	// The quality of the read sequence contained in this alignment record
	// (equivalent to QUAL in SAM).
	// `alignedSequence` and `alignedQuality` may be shorter than the full read
	// sequence and quality. This will occur if the alignment is part of a
	// chimeric alignment, or if the read was trimmed. When this occurs, the CIGAR
	// for this read will begin/end with a hard clip operator that will indicate
	// the length of the excised sequence.
	AlignedQuality []int32 `protobuf:"varint,15,rep,packed,name=aligned_quality,json=alignedQuality,proto3" json:"aligned_quality,omitempty"`
	// The mapping of the primary alignment of the
	// `(readNumber+1)%numberReads` read in the fragment. It replaces
	// mate position and mate strand in SAM.
	NextMatePosition *Position `protobuf:"bytes,16,opt,name=next_mate_position,json=nextMatePosition,proto3" json:"next_mate_position,omitempty"`
	// A map of additional read alignment information. This must be of the form
	// map<string, string[]> (string key mapping to a list of string values).
	Info                 map[string]*_struct.ListValue `` /* 150-byte string literal not displayed */
	XXX_NoUnkeyedLiteral struct{}                      `json:"-"`
	XXX_unrecognized     []byte                        `json:"-"`
	XXX_sizecache        int32                         `json:"-"`
}

A read alignment describes a linear alignment of a string of DNA to a [reference sequence][google.genomics.v1.Reference], in addition to metadata about the fragment (the molecule of DNA sequenced) and the read (the bases which were read by the sequencer). A read is equivalent to a line in a SAM file. A read belongs to exactly one read group and exactly one [read group set][google.genomics.v1.ReadGroupSet].

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

### Reverse-stranded reads

Mapped reads (reads having a non-null `alignment`) can be aligned to either the forward or the reverse strand of their associated reference. Strandedness of a mapped read is encoded by `alignment.position.reverseStrand`.

If we consider the reference to be a forward-stranded coordinate space of `[0, reference.length)` with `0` as the left-most position and `reference.length` as the right-most position, reads are always aligned left to right. That is, `alignment.position.position` always refers to the left-most reference coordinate and `alignment.cigar` describes the alignment of this read to the reference from left to right. All per-base fields such as `alignedSequence` and `alignedQuality` share this same left-to-right orientation; this is true of reads which are aligned to either strand. For reverse-stranded reads, this means that `alignedSequence` is the reverse complement of the bases that were originally reported by the sequencing machine.

### Generating a reference-aligned sequence string

When interacting with mapped reads, it's often useful to produce a string representing the local alignment of the read to reference. The following pseudocode demonstrates one way of doing this: 

out = ""
offset = 0
for c in read.alignment.cigar {
  switch c.operation {
  case "ALIGNMENT_MATCH", "SEQUENCE_MATCH", "SEQUENCE_MISMATCH":
    out += read.alignedSequence[offset:offset+c.operationLength]
    offset += c.operationLength
    break
  case "CLIP_SOFT", "INSERT":
    offset += c.operationLength
    break
  case "PAD":
    out += repeat("*", c.operationLength)
    break
  case "DELETE":
    out += repeat("-", c.operationLength)
    break
  case "SKIP":
    out += repeat(" ", c.operationLength)
    break
  case "CLIP_HARD":
    break
  }
}
return out

### Converting to SAM's CIGAR string

The following pseudocode generates a SAM CIGAR string from the `cigar` field. Note that this is a lossy conversion (`cigar.referenceSequence` is lost). 

cigarMap = {
  "ALIGNMENT_MATCH": "M",
  "INSERT": "I",
  "DELETE": "D",
  "SKIP": "N",
  "CLIP_SOFT": "S",
  "CLIP_HARD": "H",
  "PAD": "P",
  "SEQUENCE_MATCH": "=",
  "SEQUENCE_MISMATCH": "X",
}
cigarStr = ""
for c in read.alignment.cigar {
  cigarStr += c.operationLength + cigarMap[c.operation]
}
return cigarStr

func (*Read) Descriptor 

func (*Read) Descriptor() ([]byte, []int)

func (*Read) GetAlignedQuality 

func (m *Read) GetAlignedQuality() []int32

func (*Read) GetAlignedSequence 

func (m *Read) GetAlignedSequence() string

func (*Read) GetAlignment 

func (m *Read) GetAlignment() *LinearAlignment

func (*Read) GetDuplicateFragment 

func (m *Read) GetDuplicateFragment() bool

func (*Read) GetFailedVendorQualityChecks 

func (m *Read) GetFailedVendorQualityChecks() bool

func (*Read) GetFragmentLength 

func (m *Read) GetFragmentLength() int32

func (*Read) GetFragmentName 

func (m *Read) GetFragmentName() string

func (*Read) GetId 

func (m *Read) GetId() string

func (*Read) GetInfo 

func (m *Read) GetInfo() map[string]*_struct.ListValue

func (*Read) GetNextMatePosition 

func (m *Read) GetNextMatePosition() *Position

func (*Read) GetNumberReads 

func (m *Read) GetNumberReads() int32

func (*Read) GetProperPlacement 

func (m *Read) GetProperPlacement() bool

func (*Read) GetReadGroupId 

func (m *Read) GetReadGroupId() string

func (*Read) GetReadGroupSetId 

func (m *Read) GetReadGroupSetId() string

func (*Read) GetReadNumber 

func (m *Read) GetReadNumber() int32

func (*Read) GetSecondaryAlignment 

func (m *Read) GetSecondaryAlignment() bool

func (*Read) GetSupplementaryAlignment 

func (m *Read) GetSupplementaryAlignment() bool

func (*Read) ProtoMessage 

func (*Read) ProtoMessage()

func (*Read) Reset 

func (m *Read) Reset()

func (*Read) String 

func (m *Read) String() string

func (*Read) XXX_DiscardUnknown 

func (m *Read) XXX_DiscardUnknown()

func (*Read) XXX_Marshal 

func (m *Read) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*Read) XXX_Merge 

func (m *Read) XXX_Merge(src proto.Message)

func (*Read) XXX_Size 

func (m *Read) XXX_Size() int

func (*Read) XXX_Unmarshal 

func (m *Read) XXX_Unmarshal(b []byte) error

type ReadGroup 

type ReadGroup struct {
	// The server-generated read group ID, unique for all read groups.
	// Note: This is different than the @RG ID field in the SAM spec. For that
	// value, see [name][google.genomics.v1.ReadGroup.name].
	Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// The dataset to which this read group belongs.
	DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
	// The read group name. This corresponds to the @RG ID field in the SAM spec.
	Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
	// A free-form text description of this read group.
	Description string `protobuf:"bytes,4,opt,name=description,proto3" json:"description,omitempty"`
	// A client-supplied sample identifier for the reads in this read group.
	SampleId string `protobuf:"bytes,5,opt,name=sample_id,json=sampleId,proto3" json:"sample_id,omitempty"`
	// The experiment used to generate this read group.
	Experiment *ReadGroup_Experiment `protobuf:"bytes,6,opt,name=experiment,proto3" json:"experiment,omitempty"`
	// The predicted insert size of this read group. The insert size is the length
	// the sequenced DNA fragment from end-to-end, not including the adapters.
	PredictedInsertSize int32 `protobuf:"varint,7,opt,name=predicted_insert_size,json=predictedInsertSize,proto3" json:"predicted_insert_size,omitempty"`
	// The programs used to generate this read group. Programs are always
	// identical for all read groups within a read group set. For this reason,
	// only the first read group in a returned set will have this field
	// populated.
	Programs []*ReadGroup_Program `protobuf:"bytes,10,rep,name=programs,proto3" json:"programs,omitempty"`
	// The reference set the reads in this read group are aligned to.
	ReferenceSetId string `protobuf:"bytes,11,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
	// A map of additional read group information. This must be of the form
	// map<string, string[]> (string key mapping to a list of string values).
	Info                 map[string]*_struct.ListValue `` /* 150-byte string literal not displayed */
	XXX_NoUnkeyedLiteral struct{}                      `json:"-"`
	XXX_unrecognized     []byte                        `json:"-"`
	XXX_sizecache        int32                         `json:"-"`
}

A read group is all the data that's processed the same way by the sequencer.

func (*ReadGroup) Descriptor 

func (*ReadGroup) Descriptor() ([]byte, []int)

func (*ReadGroup) GetDatasetId 

func (m *ReadGroup) GetDatasetId() string

func (*ReadGroup) GetDescription 

func (m *ReadGroup) GetDescription() string

func (*ReadGroup) GetExperiment 

func (m *ReadGroup) GetExperiment() *ReadGroup_Experiment

func (*ReadGroup) GetId 

func (m *ReadGroup) GetId() string

func (*ReadGroup) GetInfo 

func (m *ReadGroup) GetInfo() map[string]*_struct.ListValue

func (*ReadGroup) GetName 

func (m *ReadGroup) GetName() string

func (*ReadGroup) GetPredictedInsertSize 

func (m *ReadGroup) GetPredictedInsertSize() int32

func (*ReadGroup) GetPrograms 

func (m *ReadGroup) GetPrograms() []*ReadGroup_Program

func (*ReadGroup) GetReferenceSetId 

func (m *ReadGroup) GetReferenceSetId() string

func (*ReadGroup) GetSampleId 

func (m *ReadGroup) GetSampleId() string

func (*ReadGroup) ProtoMessage 

func (*ReadGroup) ProtoMessage()

func (*ReadGroup) Reset 

func (m *ReadGroup) Reset()

func (*ReadGroup) String 

func (m *ReadGroup) String() string

func (*ReadGroup) XXX_DiscardUnknown 

func (m *ReadGroup) XXX_DiscardUnknown()

func (*ReadGroup) XXX_Marshal 

func (m *ReadGroup) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ReadGroup) XXX_Merge 

func (m *ReadGroup) XXX_Merge(src proto.Message)

func (*ReadGroup) XXX_Size 

func (m *ReadGroup) XXX_Size() int

func (*ReadGroup) XXX_Unmarshal 

func (m *ReadGroup) XXX_Unmarshal(b []byte) error

type ReadGroupSet 

type ReadGroupSet struct {
	// The server-generated read group set ID, unique for all read group sets.
	Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// The dataset to which this read group set belongs.
	DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
	// The reference set to which the reads in this read group set are aligned.
	ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
	// The read group set name. By default this will be initialized to the sample
	// name of the sequenced data contained in this set.
	Name string `protobuf:"bytes,4,opt,name=name,proto3" json:"name,omitempty"`
	// The filename of the original source file for this read group set, if any.
	Filename string `protobuf:"bytes,5,opt,name=filename,proto3" json:"filename,omitempty"`
	// The read groups in this set. There are typically 1-10 read groups in a read
	// group set.
	ReadGroups []*ReadGroup `protobuf:"bytes,6,rep,name=read_groups,json=readGroups,proto3" json:"read_groups,omitempty"`
	// A map of additional read group set information.
	Info                 map[string]*_struct.ListValue `` /* 149-byte string literal not displayed */
	XXX_NoUnkeyedLiteral struct{}                      `json:"-"`
	XXX_unrecognized     []byte                        `json:"-"`
	XXX_sizecache        int32                         `json:"-"`
}

A read group set is a logical collection of read groups, which are collections of reads produced by a sequencer. A read group set typically models reads corresponding to one sample, sequenced one way, and aligned one way.

* A read group set belongs to one dataset. * A read group belongs to one read group set. * A read belongs to one read group.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

func (*ReadGroupSet) Descriptor 

func (*ReadGroupSet) Descriptor() ([]byte, []int)

func (*ReadGroupSet) GetDatasetId 

func (m *ReadGroupSet) GetDatasetId() string

func (*ReadGroupSet) GetFilename 

func (m *ReadGroupSet) GetFilename() string

func (*ReadGroupSet) GetId 

func (m *ReadGroupSet) GetId() string

func (*ReadGroupSet) GetInfo 

func (m *ReadGroupSet) GetInfo() map[string]*_struct.ListValue

func (*ReadGroupSet) GetName 

func (m *ReadGroupSet) GetName() string

func (*ReadGroupSet) GetReadGroups 

func (m *ReadGroupSet) GetReadGroups() []*ReadGroup

func (*ReadGroupSet) GetReferenceSetId 

func (m *ReadGroupSet) GetReferenceSetId() string

func (*ReadGroupSet) ProtoMessage 

func (*ReadGroupSet) ProtoMessage()

func (*ReadGroupSet) Reset 

func (m *ReadGroupSet) Reset()

func (*ReadGroupSet) String 

func (m *ReadGroupSet) String() string

func (*ReadGroupSet) XXX_DiscardUnknown 

func (m *ReadGroupSet) XXX_DiscardUnknown()

func (*ReadGroupSet) XXX_Marshal 

func (m *ReadGroupSet) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ReadGroupSet) XXX_Merge 

func (m *ReadGroupSet) XXX_Merge(src proto.Message)

func (*ReadGroupSet) XXX_Size 

func (m *ReadGroupSet) XXX_Size() int

func (*ReadGroupSet) XXX_Unmarshal 

func (m *ReadGroupSet) XXX_Unmarshal(b []byte) error

type ReadGroup_Experiment 

type ReadGroup_Experiment struct {
	// A client-supplied library identifier; a library is a collection of DNA
	// fragments which have been prepared for sequencing from a sample. This
	// field is important for quality control as error or bias can be introduced
	// during sample preparation.
	LibraryId string `protobuf:"bytes,1,opt,name=library_id,json=libraryId,proto3" json:"library_id,omitempty"`
	// The platform unit used as part of this experiment, for example
	// flowcell-barcode.lane for Illumina or slide for SOLiD. Corresponds to the
	// @RG PU field in the SAM spec.
	PlatformUnit string `protobuf:"bytes,2,opt,name=platform_unit,json=platformUnit,proto3" json:"platform_unit,omitempty"`
	// The sequencing center used as part of this experiment.
	SequencingCenter string `protobuf:"bytes,3,opt,name=sequencing_center,json=sequencingCenter,proto3" json:"sequencing_center,omitempty"`
	// The instrument model used as part of this experiment. This maps to
	// sequencing technology in the SAM spec.
	InstrumentModel      string   `protobuf:"bytes,4,opt,name=instrument_model,json=instrumentModel,proto3" json:"instrument_model,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*ReadGroup_Experiment) Descriptor 

func (*ReadGroup_Experiment) Descriptor() ([]byte, []int)

func (*ReadGroup_Experiment) GetInstrumentModel 

func (m *ReadGroup_Experiment) GetInstrumentModel() string

func (*ReadGroup_Experiment) GetLibraryId 

func (m *ReadGroup_Experiment) GetLibraryId() string

func (*ReadGroup_Experiment) GetPlatformUnit 

func (m *ReadGroup_Experiment) GetPlatformUnit() string

func (*ReadGroup_Experiment) GetSequencingCenter 

func (m *ReadGroup_Experiment) GetSequencingCenter() string

func (*ReadGroup_Experiment) ProtoMessage 

func (*ReadGroup_Experiment) ProtoMessage()

func (*ReadGroup_Experiment) Reset 

func (m *ReadGroup_Experiment) Reset()

func (*ReadGroup_Experiment) String 

func (m *ReadGroup_Experiment) String() string

func (*ReadGroup_Experiment) XXX_DiscardUnknown 

func (m *ReadGroup_Experiment) XXX_DiscardUnknown()

func (*ReadGroup_Experiment) XXX_Marshal 

func (m *ReadGroup_Experiment) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ReadGroup_Experiment) XXX_Merge 

func (m *ReadGroup_Experiment) XXX_Merge(src proto.Message)

func (*ReadGroup_Experiment) XXX_Size 

func (m *ReadGroup_Experiment) XXX_Size() int

func (*ReadGroup_Experiment) XXX_Unmarshal 

func (m *ReadGroup_Experiment) XXX_Unmarshal(b []byte) error

type ReadGroup_Program 

type ReadGroup_Program struct {
	// The command line used to run this program.
	CommandLine string `protobuf:"bytes,1,opt,name=command_line,json=commandLine,proto3" json:"command_line,omitempty"`
	// The user specified locally unique ID of the program. Used along with
	// `prevProgramId` to define an ordering between programs.
	Id string `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
	// The display name of the program. This is typically the colloquial name of
	// the tool used, for example 'bwa' or 'picard'.
	Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
	// The ID of the program run before this one.
	PrevProgramId string `protobuf:"bytes,4,opt,name=prev_program_id,json=prevProgramId,proto3" json:"prev_program_id,omitempty"`
	// The version of the program run.
	Version              string   `protobuf:"bytes,5,opt,name=version,proto3" json:"version,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*ReadGroup_Program) Descriptor 

func (*ReadGroup_Program) Descriptor() ([]byte, []int)

func (*ReadGroup_Program) GetCommandLine 

func (m *ReadGroup_Program) GetCommandLine() string

func (*ReadGroup_Program) GetId 

func (m *ReadGroup_Program) GetId() string

func (*ReadGroup_Program) GetName 

func (m *ReadGroup_Program) GetName() string

func (*ReadGroup_Program) GetPrevProgramId 

func (m *ReadGroup_Program) GetPrevProgramId() string

func (*ReadGroup_Program) GetVersion 

func (m *ReadGroup_Program) GetVersion() string

func (*ReadGroup_Program) ProtoMessage 

func (*ReadGroup_Program) ProtoMessage()

func (*ReadGroup_Program) Reset 

func (m *ReadGroup_Program) Reset()

func (*ReadGroup_Program) String 

func (m *ReadGroup_Program) String() string

func (*ReadGroup_Program) XXX_DiscardUnknown 

func (m *ReadGroup_Program) XXX_DiscardUnknown()

func (*ReadGroup_Program) XXX_Marshal 

func (m *ReadGroup_Program) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ReadGroup_Program) XXX_Merge 

func (m *ReadGroup_Program) XXX_Merge(src proto.Message)

func (*ReadGroup_Program) XXX_Size 

func (m *ReadGroup_Program) XXX_Size() int

func (*ReadGroup_Program) XXX_Unmarshal 

func (m *ReadGroup_Program) XXX_Unmarshal(b []byte) error

type ReadServiceV1Client 

type ReadServiceV1Client interface {
	// Creates read group sets by asynchronously importing the provided
	// information.
	//
	// For the definitions of read group sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// The caller must have WRITE permissions to the dataset.
	//
	// ## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import
	//
	// - Tags will be converted to strings - tag types are not preserved
	// - Comments (`@CO`) in the input file header will not be preserved
	// - Original header order of references (`@SQ`) will not be preserved
	// - Any reverse stranded unmapped reads will be reverse complemented, and
	// their qualities (also the "BQ" and "OQ" tags, if any) will be reversed
	// - Unmapped reads will be stripped of positional information (reference name
	// and position)
	ImportReadGroupSets(ctx context.Context, in *ImportReadGroupSetsRequest, opts ...grpc.CallOption) (*longrunning.Operation, error)
	// Exports a read group set to a BAM file in Google Cloud Storage.
	//
	// For the definitions of read group sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Note that currently there may be some differences between exported BAM
	// files and the original BAM file at the time of import. See
	// [ImportReadGroupSets][google.genomics.v1.ReadServiceV1.ImportReadGroupSets]
	// for caveats.
	ExportReadGroupSet(ctx context.Context, in *ExportReadGroupSetRequest, opts ...grpc.CallOption) (*longrunning.Operation, error)
	// Searches for read group sets matching the criteria.
	//
	// For the definitions of read group sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Implements
	// [GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135).
	SearchReadGroupSets(ctx context.Context, in *SearchReadGroupSetsRequest, opts ...grpc.CallOption) (*SearchReadGroupSetsResponse, error)
	// Updates a read group set.
	//
	// For the definitions of read group sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// This method supports patch semantics.
	UpdateReadGroupSet(ctx context.Context, in *UpdateReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error)
	// Deletes a read group set.
	//
	// For the definitions of read group sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	DeleteReadGroupSet(ctx context.Context, in *DeleteReadGroupSetRequest, opts ...grpc.CallOption) (*empty.Empty, error)
	// Gets a read group set by ID.
	//
	// For the definitions of read group sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	GetReadGroupSet(ctx context.Context, in *GetReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error)
	// Lists fixed width coverage buckets for a read group set, each of which
	// correspond to a range of a reference sequence. Each bucket summarizes
	// coverage information across its corresponding genomic range.
	//
	// For the definitions of read group sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Coverage is defined as the number of reads which are aligned to a given
	// base in the reference sequence. Coverage buckets are available at several
	// precomputed bucket widths, enabling retrieval of various coverage 'zoom
	// levels'. The caller must have READ permissions for the target read group
	// set.
	ListCoverageBuckets(ctx context.Context, in *ListCoverageBucketsRequest, opts ...grpc.CallOption) (*ListCoverageBucketsResponse, error)
	// Gets a list of reads for one or more read group sets.
	//
	// For the definitions of read group sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Reads search operates over a genomic coordinate space of reference sequence
	// & position defined over the reference sequences to which the requested
	// read group sets are aligned.
	//
	// If a target positional range is specified, search returns all reads whose
	// alignment to the reference genome overlap the range. A query which
	// specifies only read group set IDs yields all reads in those read group
	// sets, including unmapped reads.
	//
	// All reads returned (including reads on subsequent pages) are ordered by
	// genomic coordinate (by reference sequence, then position). Reads with
	// equivalent genomic coordinates are returned in an unspecified order. This
	// order is consistent, such that two queries for the same content (regardless
	// of page size) yield reads in the same order across their respective streams
	// of paginated responses.
	//
	// Implements
	// [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L85).
	SearchReads(ctx context.Context, in *SearchReadsRequest, opts ...grpc.CallOption) (*SearchReadsResponse, error)
}

ReadServiceV1Client is the client API for ReadServiceV1 service.

For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.

func NewReadServiceV1Client 

func NewReadServiceV1Client(cc *grpc.ClientConn) ReadServiceV1Client

type ReadServiceV1Server 

type ReadServiceV1Server interface {
	// Creates read group sets by asynchronously importing the provided
	// information.
	//
	// For the definitions of read group sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// The caller must have WRITE permissions to the dataset.
	//
	// ## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import
	//
	// - Tags will be converted to strings - tag types are not preserved
	// - Comments (`@CO`) in the input file header will not be preserved
	// - Original header order of references (`@SQ`) will not be preserved
	// - Any reverse stranded unmapped reads will be reverse complemented, and
	// their qualities (also the "BQ" and "OQ" tags, if any) will be reversed
	// - Unmapped reads will be stripped of positional information (reference name
	// and position)
	ImportReadGroupSets(context.Context, *ImportReadGroupSetsRequest) (*longrunning.Operation, error)
	// Exports a read group set to a BAM file in Google Cloud Storage.
	//
	// For the definitions of read group sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Note that currently there may be some differences between exported BAM
	// files and the original BAM file at the time of import. See
	// [ImportReadGroupSets][google.genomics.v1.ReadServiceV1.ImportReadGroupSets]
	// for caveats.
	ExportReadGroupSet(context.Context, *ExportReadGroupSetRequest) (*longrunning.Operation, error)
	// Searches for read group sets matching the criteria.
	//
	// For the definitions of read group sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Implements
	// [GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135).
	SearchReadGroupSets(context.Context, *SearchReadGroupSetsRequest) (*SearchReadGroupSetsResponse, error)
	// Updates a read group set.
	//
	// For the definitions of read group sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// This method supports patch semantics.
	UpdateReadGroupSet(context.Context, *UpdateReadGroupSetRequest) (*ReadGroupSet, error)
	// Deletes a read group set.
	//
	// For the definitions of read group sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	DeleteReadGroupSet(context.Context, *DeleteReadGroupSetRequest) (*empty.Empty, error)
	// Gets a read group set by ID.
	//
	// For the definitions of read group sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	GetReadGroupSet(context.Context, *GetReadGroupSetRequest) (*ReadGroupSet, error)
	// Lists fixed width coverage buckets for a read group set, each of which
	// correspond to a range of a reference sequence. Each bucket summarizes
	// coverage information across its corresponding genomic range.
	//
	// For the definitions of read group sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Coverage is defined as the number of reads which are aligned to a given
	// base in the reference sequence. Coverage buckets are available at several
	// precomputed bucket widths, enabling retrieval of various coverage 'zoom
	// levels'. The caller must have READ permissions for the target read group
	// set.
	ListCoverageBuckets(context.Context, *ListCoverageBucketsRequest) (*ListCoverageBucketsResponse, error)
	// Gets a list of reads for one or more read group sets.
	//
	// For the definitions of read group sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Reads search operates over a genomic coordinate space of reference sequence
	// & position defined over the reference sequences to which the requested
	// read group sets are aligned.
	//
	// If a target positional range is specified, search returns all reads whose
	// alignment to the reference genome overlap the range. A query which
	// specifies only read group set IDs yields all reads in those read group
	// sets, including unmapped reads.
	//
	// All reads returned (including reads on subsequent pages) are ordered by
	// genomic coordinate (by reference sequence, then position). Reads with
	// equivalent genomic coordinates are returned in an unspecified order. This
	// order is consistent, such that two queries for the same content (regardless
	// of page size) yield reads in the same order across their respective streams
	// of paginated responses.
	//
	// Implements
	// [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L85).
	SearchReads(context.Context, *SearchReadsRequest) (*SearchReadsResponse, error)
}

ReadServiceV1Server is the server API for ReadServiceV1 service.

type Reference 

type Reference struct {
	// The server-generated reference ID, unique across all references.
	Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// The length of this reference's sequence.
	Length int64 `protobuf:"varint,2,opt,name=length,proto3" json:"length,omitempty"`
	// MD5 of the upper-case sequence excluding all whitespace characters (this
	// is equivalent to SQ:M5 in SAM). This value is represented in lower case
	// hexadecimal format.
	Md5Checksum string `protobuf:"bytes,3,opt,name=md5checksum,proto3" json:"md5checksum,omitempty"`
	// The name of this reference, for example `22`.
	Name string `protobuf:"bytes,4,opt,name=name,proto3" json:"name,omitempty"`
	// The URI from which the sequence was obtained. Typically specifies a FASTA
	// format file.
	SourceUri string `protobuf:"bytes,5,opt,name=source_uri,json=sourceUri,proto3" json:"source_uri,omitempty"`
	// All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
	// with a version number, for example `GCF_000001405.26`.
	SourceAccessions []string `protobuf:"bytes,6,rep,name=source_accessions,json=sourceAccessions,proto3" json:"source_accessions,omitempty"`
	// ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
	NcbiTaxonId          int32    `protobuf:"varint,7,opt,name=ncbi_taxon_id,json=ncbiTaxonId,proto3" json:"ncbi_taxon_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

A reference is a canonical assembled DNA sequence, intended to act as a reference coordinate space for other genomic annotations. A single reference might represent the human chromosome 1 or mitochandrial DNA, for instance. A reference belongs to one or more reference sets.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

func (*Reference) Descriptor 

func (*Reference) Descriptor() ([]byte, []int)

func (*Reference) GetId 

func (m *Reference) GetId() string

func (*Reference) GetLength 

func (m *Reference) GetLength() int64

func (*Reference) GetMd5Checksum 

func (m *Reference) GetMd5Checksum() string

func (*Reference) GetName 

func (m *Reference) GetName() string

func (*Reference) GetNcbiTaxonId 

func (m *Reference) GetNcbiTaxonId() int32

func (*Reference) GetSourceAccessions 

func (m *Reference) GetSourceAccessions() []string

func (*Reference) GetSourceUri 

func (m *Reference) GetSourceUri() string

func (*Reference) ProtoMessage 

func (*Reference) ProtoMessage()

func (*Reference) Reset 

func (m *Reference) Reset()

func (*Reference) String 

func (m *Reference) String() string

func (*Reference) XXX_DiscardUnknown 

func (m *Reference) XXX_DiscardUnknown()

func (*Reference) XXX_Marshal 

func (m *Reference) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*Reference) XXX_Merge 

func (m *Reference) XXX_Merge(src proto.Message)

func (*Reference) XXX_Size 

func (m *Reference) XXX_Size() int

func (*Reference) XXX_Unmarshal 

func (m *Reference) XXX_Unmarshal(b []byte) error

type ReferenceBound 

type ReferenceBound struct {
	// The name of the reference associated with this reference bound.
	ReferenceName string `protobuf:"bytes,1,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
	// An upper bound (inclusive) on the starting coordinate of any
	// variant in the reference sequence.
	UpperBound           int64    `protobuf:"varint,2,opt,name=upper_bound,json=upperBound,proto3" json:"upper_bound,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.

func (*ReferenceBound) Descriptor 

func (*ReferenceBound) Descriptor() ([]byte, []int)

func (*ReferenceBound) GetReferenceName 

func (m *ReferenceBound) GetReferenceName() string

func (*ReferenceBound) GetUpperBound 

func (m *ReferenceBound) GetUpperBound() int64

func (*ReferenceBound) ProtoMessage 

func (*ReferenceBound) ProtoMessage()

func (*ReferenceBound) Reset 

func (m *ReferenceBound) Reset()

func (*ReferenceBound) String 

func (m *ReferenceBound) String() string

func (*ReferenceBound) XXX_DiscardUnknown 

func (m *ReferenceBound) XXX_DiscardUnknown()

func (*ReferenceBound) XXX_Marshal 

func (m *ReferenceBound) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ReferenceBound) XXX_Merge 

func (m *ReferenceBound) XXX_Merge(src proto.Message)

func (*ReferenceBound) XXX_Size 

func (m *ReferenceBound) XXX_Size() int

func (*ReferenceBound) XXX_Unmarshal 

func (m *ReferenceBound) XXX_Unmarshal(b []byte) error

type ReferenceServiceV1Client 

type ReferenceServiceV1Client interface {
	// Searches for reference sets which match the given criteria.
	//
	// For the definitions of references and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Implements
	// [GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71)
	SearchReferenceSets(ctx context.Context, in *SearchReferenceSetsRequest, opts ...grpc.CallOption) (*SearchReferenceSetsResponse, error)
	// Gets a reference set.
	//
	// For the definitions of references and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Implements
	// [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).
	GetReferenceSet(ctx context.Context, in *GetReferenceSetRequest, opts ...grpc.CallOption) (*ReferenceSet, error)
	// Searches for references which match the given criteria.
	//
	// For the definitions of references and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Implements
	// [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).
	SearchReferences(ctx context.Context, in *SearchReferencesRequest, opts ...grpc.CallOption) (*SearchReferencesResponse, error)
	// Gets a reference.
	//
	// For the definitions of references and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Implements
	// [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).
	GetReference(ctx context.Context, in *GetReferenceRequest, opts ...grpc.CallOption) (*Reference, error)
	// Lists the bases in a reference, optionally restricted to a range.
	//
	// For the definitions of references and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Implements
	// [GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221).
	ListBases(ctx context.Context, in *ListBasesRequest, opts ...grpc.CallOption) (*ListBasesResponse, error)
}

ReferenceServiceV1Client is the client API for ReferenceServiceV1 service.

For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.

func NewReferenceServiceV1Client 

func NewReferenceServiceV1Client(cc *grpc.ClientConn) ReferenceServiceV1Client

type ReferenceServiceV1Server 

type ReferenceServiceV1Server interface {
	// Searches for reference sets which match the given criteria.
	//
	// For the definitions of references and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Implements
	// [GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71)
	SearchReferenceSets(context.Context, *SearchReferenceSetsRequest) (*SearchReferenceSetsResponse, error)
	// Gets a reference set.
	//
	// For the definitions of references and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Implements
	// [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).
	GetReferenceSet(context.Context, *GetReferenceSetRequest) (*ReferenceSet, error)
	// Searches for references which match the given criteria.
	//
	// For the definitions of references and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Implements
	// [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).
	SearchReferences(context.Context, *SearchReferencesRequest) (*SearchReferencesResponse, error)
	// Gets a reference.
	//
	// For the definitions of references and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Implements
	// [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).
	GetReference(context.Context, *GetReferenceRequest) (*Reference, error)
	// Lists the bases in a reference, optionally restricted to a range.
	//
	// For the definitions of references and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Implements
	// [GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221).
	ListBases(context.Context, *ListBasesRequest) (*ListBasesResponse, error)
}

ReferenceServiceV1Server is the server API for ReferenceServiceV1 service.

type ReferenceSet 

type ReferenceSet struct {
	// The server-generated reference set ID, unique across all reference sets.
	Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// The IDs of the reference objects that are part of this set.
	// `Reference.md5checksum` must be unique within this set.
	ReferenceIds []string `protobuf:"bytes,2,rep,name=reference_ids,json=referenceIds,proto3" json:"reference_ids,omitempty"`
	// Order-independent MD5 checksum which identifies this reference set. The
	// checksum is computed by sorting all lower case hexidecimal string
	// `reference.md5checksum` (for all reference in this set) in
	// ascending lexicographic order, concatenating, and taking the MD5 of that
	// value. The resulting value is represented in lower case hexadecimal format.
	Md5Checksum string `protobuf:"bytes,3,opt,name=md5checksum,proto3" json:"md5checksum,omitempty"`
	// ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
	// indicating the species which this reference set is intended to model. Note
	// that contained references may specify a different `ncbiTaxonId`, as
	// assemblies may contain reference sequences which do not belong to the
	// modeled species, for example EBV in a human reference genome.
	NcbiTaxonId int32 `protobuf:"varint,4,opt,name=ncbi_taxon_id,json=ncbiTaxonId,proto3" json:"ncbi_taxon_id,omitempty"`
	// Free text description of this reference set.
	Description string `protobuf:"bytes,5,opt,name=description,proto3" json:"description,omitempty"`
	// Public id of this reference set, such as `GRCh37`.
	AssemblyId string `protobuf:"bytes,6,opt,name=assembly_id,json=assemblyId,proto3" json:"assembly_id,omitempty"`
	// The URI from which the references were obtained.
	SourceUri string `protobuf:"bytes,7,opt,name=source_uri,json=sourceUri,proto3" json:"source_uri,omitempty"`
	// All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
	// with a version number, for example `NC_000001.11`.
	SourceAccessions     []string `protobuf:"bytes,8,rep,name=source_accessions,json=sourceAccessions,proto3" json:"source_accessions,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

A reference set is a set of references which typically comprise a reference assembly for a species, such as `GRCh38` which is representative of the human genome. A reference set defines a common coordinate space for comparing reference-aligned experimental data. A reference set contains 1 or more references.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

func (*ReferenceSet) Descriptor 

func (*ReferenceSet) Descriptor() ([]byte, []int)

func (*ReferenceSet) GetAssemblyId 

func (m *ReferenceSet) GetAssemblyId() string

func (*ReferenceSet) GetDescription 

func (m *ReferenceSet) GetDescription() string

func (*ReferenceSet) GetId 

func (m *ReferenceSet) GetId() string

func (*ReferenceSet) GetMd5Checksum 

func (m *ReferenceSet) GetMd5Checksum() string

func (*ReferenceSet) GetNcbiTaxonId 

func (m *ReferenceSet) GetNcbiTaxonId() int32

func (*ReferenceSet) GetReferenceIds 

func (m *ReferenceSet) GetReferenceIds() []string

func (*ReferenceSet) GetSourceAccessions 

func (m *ReferenceSet) GetSourceAccessions() []string

func (*ReferenceSet) GetSourceUri 

func (m *ReferenceSet) GetSourceUri() string

func (*ReferenceSet) ProtoMessage 

func (*ReferenceSet) ProtoMessage()

func (*ReferenceSet) Reset 

func (m *ReferenceSet) Reset()

func (*ReferenceSet) String 

func (m *ReferenceSet) String() string

func (*ReferenceSet) XXX_DiscardUnknown 

func (m *ReferenceSet) XXX_DiscardUnknown()

func (*ReferenceSet) XXX_Marshal 

func (m *ReferenceSet) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*ReferenceSet) XXX_Merge 

func (m *ReferenceSet) XXX_Merge(src proto.Message)

func (*ReferenceSet) XXX_Size 

func (m *ReferenceSet) XXX_Size() int

func (*ReferenceSet) XXX_Unmarshal 

func (m *ReferenceSet) XXX_Unmarshal(b []byte) error

type SearchAnnotationSetsRequest 

type SearchAnnotationSetsRequest struct {
	// Required. The dataset IDs to search within. Caller must have `READ` access
	// to these datasets.
	DatasetIds []string `protobuf:"bytes,1,rep,name=dataset_ids,json=datasetIds,proto3" json:"dataset_ids,omitempty"`
	// If specified, only annotation sets associated with the given reference set
	// are returned.
	ReferenceSetId string `protobuf:"bytes,2,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
	// Only return annotations sets for which a substring of the name matches this
	// string (case insensitive).
	Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
	// If specified, only annotation sets that have any of these types are
	// returned.
	Types []AnnotationType `protobuf:"varint,4,rep,packed,name=types,proto3,enum=google.genomics.v1.AnnotationType" json:"types,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// To get the next page of results, set this parameter to the value of
	// `nextPageToken` from the previous response.
	PageToken string `protobuf:"bytes,5,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
	// The maximum number of results to return in a single page. If unspecified,
	// defaults to 128. The maximum value is 1024.
	PageSize             int32    `protobuf:"varint,6,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*SearchAnnotationSetsRequest) Descriptor 

func (*SearchAnnotationSetsRequest) Descriptor() ([]byte, []int)

func (*SearchAnnotationSetsRequest) GetDatasetIds 

func (m *SearchAnnotationSetsRequest) GetDatasetIds() []string

func (*SearchAnnotationSetsRequest) GetName 

func (m *SearchAnnotationSetsRequest) GetName() string

func (*SearchAnnotationSetsRequest) GetPageSize 

func (m *SearchAnnotationSetsRequest) GetPageSize() int32

func (*SearchAnnotationSetsRequest) GetPageToken 

func (m *SearchAnnotationSetsRequest) GetPageToken() string

func (*SearchAnnotationSetsRequest) GetReferenceSetId 

func (m *SearchAnnotationSetsRequest) GetReferenceSetId() string

func (*SearchAnnotationSetsRequest) GetTypes 

func (m *SearchAnnotationSetsRequest) GetTypes() []AnnotationType

func (*SearchAnnotationSetsRequest) ProtoMessage 

func (*SearchAnnotationSetsRequest) ProtoMessage()

func (*SearchAnnotationSetsRequest) Reset 

func (m *SearchAnnotationSetsRequest) Reset()

func (*SearchAnnotationSetsRequest) String 

func (m *SearchAnnotationSetsRequest) String() string

func (*SearchAnnotationSetsRequest) XXX_DiscardUnknown 

func (m *SearchAnnotationSetsRequest) XXX_DiscardUnknown()

func (*SearchAnnotationSetsRequest) XXX_Marshal 

func (m *SearchAnnotationSetsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*SearchAnnotationSetsRequest) XXX_Merge 

func (m *SearchAnnotationSetsRequest) XXX_Merge(src proto.Message)

func (*SearchAnnotationSetsRequest) XXX_Size 

func (m *SearchAnnotationSetsRequest) XXX_Size() int

func (*SearchAnnotationSetsRequest) XXX_Unmarshal 

func (m *SearchAnnotationSetsRequest) XXX_Unmarshal(b []byte) error

type SearchAnnotationSetsResponse 

type SearchAnnotationSetsResponse struct {
	// The matching annotation sets.
	AnnotationSets []*AnnotationSet `protobuf:"bytes,1,rep,name=annotation_sets,json=annotationSets,proto3" json:"annotation_sets,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// Provide this value in a subsequent request to return the next page of
	// results. This field will be empty if there aren't any additional results.
	NextPageToken        string   `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*SearchAnnotationSetsResponse) Descriptor 

func (*SearchAnnotationSetsResponse) Descriptor() ([]byte, []int)

func (*SearchAnnotationSetsResponse) GetAnnotationSets 

func (m *SearchAnnotationSetsResponse) GetAnnotationSets() []*AnnotationSet

func (*SearchAnnotationSetsResponse) GetNextPageToken 

func (m *SearchAnnotationSetsResponse) GetNextPageToken() string

func (*SearchAnnotationSetsResponse) ProtoMessage 

func (*SearchAnnotationSetsResponse) ProtoMessage()

func (*SearchAnnotationSetsResponse) Reset 

func (m *SearchAnnotationSetsResponse) Reset()

func (*SearchAnnotationSetsResponse) String 

func (m *SearchAnnotationSetsResponse) String() string

func (*SearchAnnotationSetsResponse) XXX_DiscardUnknown 

func (m *SearchAnnotationSetsResponse) XXX_DiscardUnknown()

func (*SearchAnnotationSetsResponse) XXX_Marshal 

func (m *SearchAnnotationSetsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*SearchAnnotationSetsResponse) XXX_Merge 

func (m *SearchAnnotationSetsResponse) XXX_Merge(src proto.Message)

func (*SearchAnnotationSetsResponse) XXX_Size 

func (m *SearchAnnotationSetsResponse) XXX_Size() int

func (*SearchAnnotationSetsResponse) XXX_Unmarshal 

func (m *SearchAnnotationSetsResponse) XXX_Unmarshal(b []byte) error

type SearchAnnotationsRequest 

type SearchAnnotationsRequest struct {
	// Required. The annotation sets to search within. The caller must have
	// `READ` access to these annotation sets.
	// All queried annotation sets must have the same type.
	AnnotationSetIds []string `protobuf:"bytes,1,rep,name=annotation_set_ids,json=annotationSetIds,proto3" json:"annotation_set_ids,omitempty"`
	// Required. `reference_id` or `reference_name` must be set.
	//
	// Types that are valid to be assigned to Reference:
	//	*SearchAnnotationsRequest_ReferenceId
	//	*SearchAnnotationsRequest_ReferenceName
	Reference isSearchAnnotationsRequest_Reference `protobuf_oneof:"reference"`
	// The start position of the range on the reference, 0-based inclusive. If
	// specified,
	// [referenceId][google.genomics.v1.SearchAnnotationsRequest.reference_id] or
	// [referenceName][google.genomics.v1.SearchAnnotationsRequest.reference_name]
	// must be specified. Defaults to 0.
	Start int64 `protobuf:"varint,4,opt,name=start,proto3" json:"start,omitempty"`
	// The end position of the range on the reference, 0-based exclusive. If
	// [referenceId][google.genomics.v1.SearchAnnotationsRequest.reference_id] or
	// [referenceName][google.genomics.v1.SearchAnnotationsRequest.reference_name]
	// must be specified, Defaults to the length of the reference.
	End int64 `protobuf:"varint,5,opt,name=end,proto3" json:"end,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// To get the next page of results, set this parameter to the value of
	// `nextPageToken` from the previous response.
	PageToken string `protobuf:"bytes,6,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
	// The maximum number of results to return in a single page. If unspecified,
	// defaults to 256. The maximum value is 2048.
	PageSize             int32    `protobuf:"varint,7,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*SearchAnnotationsRequest) Descriptor 

func (*SearchAnnotationsRequest) Descriptor() ([]byte, []int)

func (*SearchAnnotationsRequest) GetAnnotationSetIds 

func (m *SearchAnnotationsRequest) GetAnnotationSetIds() []string

func (*SearchAnnotationsRequest) GetEnd 

func (m *SearchAnnotationsRequest) GetEnd() int64

func (*SearchAnnotationsRequest) GetPageSize 

func (m *SearchAnnotationsRequest) GetPageSize() int32

func (*SearchAnnotationsRequest) GetPageToken 

func (m *SearchAnnotationsRequest) GetPageToken() string

func (*SearchAnnotationsRequest) GetReference 

func (m *SearchAnnotationsRequest) GetReference() isSearchAnnotationsRequest_Reference

func (*SearchAnnotationsRequest) GetReferenceId 

func (m *SearchAnnotationsRequest) GetReferenceId() string

func (*SearchAnnotationsRequest) GetReferenceName 

func (m *SearchAnnotationsRequest) GetReferenceName() string

func (*SearchAnnotationsRequest) GetStart 

func (m *SearchAnnotationsRequest) GetStart() int64

func (*SearchAnnotationsRequest) ProtoMessage 

func (*SearchAnnotationsRequest) ProtoMessage()

func (*SearchAnnotationsRequest) Reset 

func (m *SearchAnnotationsRequest) Reset()

func (*SearchAnnotationsRequest) String 

func (m *SearchAnnotationsRequest) String() string

func (*SearchAnnotationsRequest) XXX_DiscardUnknown 

func (m *SearchAnnotationsRequest) XXX_DiscardUnknown()

func (*SearchAnnotationsRequest) XXX_Marshal 

func (m *SearchAnnotationsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*SearchAnnotationsRequest) XXX_Merge 

func (m *SearchAnnotationsRequest) XXX_Merge(src proto.Message)

func (*SearchAnnotationsRequest) XXX_OneofFuncs 

func (*SearchAnnotationsRequest) XXX_OneofFuncs() (func(msg proto.Message, b *proto.Buffer) error, func(msg proto.Message, tag, wire int, b *proto.Buffer) (bool, error), func(msg proto.Message) (n int), []interface{})

XXX_OneofFuncs is for the internal use of the proto package.

func (*SearchAnnotationsRequest) XXX_Size 

func (m *SearchAnnotationsRequest) XXX_Size() int

func (*SearchAnnotationsRequest) XXX_Unmarshal 

func (m *SearchAnnotationsRequest) XXX_Unmarshal(b []byte) error

type SearchAnnotationsRequest_ReferenceId 

type SearchAnnotationsRequest_ReferenceId struct {
	ReferenceId string `protobuf:"bytes,2,opt,name=reference_id,json=referenceId,proto3,oneof"`
}

type SearchAnnotationsRequest_ReferenceName 

type SearchAnnotationsRequest_ReferenceName struct {
	ReferenceName string `protobuf:"bytes,3,opt,name=reference_name,json=referenceName,proto3,oneof"`
}

type SearchAnnotationsResponse 

type SearchAnnotationsResponse struct {
	// The matching annotations.
	Annotations []*Annotation `protobuf:"bytes,1,rep,name=annotations,proto3" json:"annotations,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// Provide this value in a subsequent request to return the next page of
	// results. This field will be empty if there aren't any additional results.
	NextPageToken        string   `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*SearchAnnotationsResponse) Descriptor 

func (*SearchAnnotationsResponse) Descriptor() ([]byte, []int)

func (*SearchAnnotationsResponse) GetAnnotations 

func (m *SearchAnnotationsResponse) GetAnnotations() []*Annotation

func (*SearchAnnotationsResponse) GetNextPageToken 

func (m *SearchAnnotationsResponse) GetNextPageToken() string

func (*SearchAnnotationsResponse) ProtoMessage 

func (*SearchAnnotationsResponse) ProtoMessage()

func (*SearchAnnotationsResponse) Reset 

func (m *SearchAnnotationsResponse) Reset()

func (*SearchAnnotationsResponse) String 

func (m *SearchAnnotationsResponse) String() string

func (*SearchAnnotationsResponse) XXX_DiscardUnknown 

func (m *SearchAnnotationsResponse) XXX_DiscardUnknown()

func (*SearchAnnotationsResponse) XXX_Marshal 

func (m *SearchAnnotationsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*SearchAnnotationsResponse) XXX_Merge 

func (m *SearchAnnotationsResponse) XXX_Merge(src proto.Message)

func (*SearchAnnotationsResponse) XXX_Size 

func (m *SearchAnnotationsResponse) XXX_Size() int

func (*SearchAnnotationsResponse) XXX_Unmarshal 

func (m *SearchAnnotationsResponse) XXX_Unmarshal(b []byte) error

type SearchCallSetsRequest 

type SearchCallSetsRequest struct {
	// Restrict the query to call sets within the given variant sets. At least one
	// ID must be provided.
	VariantSetIds []string `protobuf:"bytes,1,rep,name=variant_set_ids,json=variantSetIds,proto3" json:"variant_set_ids,omitempty"`
	// Only return call sets for which a substring of the name matches this
	// string.
	Name string `protobuf:"bytes,2,opt,name=name,proto3" json:"name,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// To get the next page of results, set this parameter to the value of
	// `nextPageToken` from the previous response.
	PageToken string `protobuf:"bytes,3,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
	// The maximum number of results to return in a single page. If unspecified,
	// defaults to 1024.
	PageSize             int32    `protobuf:"varint,4,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The call set search request.

func (*SearchCallSetsRequest) Descriptor 

func (*SearchCallSetsRequest) Descriptor() ([]byte, []int)

func (*SearchCallSetsRequest) GetName 

func (m *SearchCallSetsRequest) GetName() string

func (*SearchCallSetsRequest) GetPageSize 

func (m *SearchCallSetsRequest) GetPageSize() int32

func (*SearchCallSetsRequest) GetPageToken 

func (m *SearchCallSetsRequest) GetPageToken() string

func (*SearchCallSetsRequest) GetVariantSetIds 

func (m *SearchCallSetsRequest) GetVariantSetIds() []string

func (*SearchCallSetsRequest) ProtoMessage 

func (*SearchCallSetsRequest) ProtoMessage()

func (*SearchCallSetsRequest) Reset 

func (m *SearchCallSetsRequest) Reset()

func (*SearchCallSetsRequest) String 

func (m *SearchCallSetsRequest) String() string

func (*SearchCallSetsRequest) XXX_DiscardUnknown 

func (m *SearchCallSetsRequest) XXX_DiscardUnknown()

func (*SearchCallSetsRequest) XXX_Marshal 

func (m *SearchCallSetsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*SearchCallSetsRequest) XXX_Merge 

func (m *SearchCallSetsRequest) XXX_Merge(src proto.Message)

func (*SearchCallSetsRequest) XXX_Size 

func (m *SearchCallSetsRequest) XXX_Size() int

func (*SearchCallSetsRequest) XXX_Unmarshal 

func (m *SearchCallSetsRequest) XXX_Unmarshal(b []byte) error

type SearchCallSetsResponse 

type SearchCallSetsResponse struct {
	// The list of matching call sets.
	CallSets []*CallSet `protobuf:"bytes,1,rep,name=call_sets,json=callSets,proto3" json:"call_sets,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// Provide this value in a subsequent request to return the next page of
	// results. This field will be empty if there aren't any additional results.
	NextPageToken        string   `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The call set search response.

func (*SearchCallSetsResponse) Descriptor 

func (*SearchCallSetsResponse) Descriptor() ([]byte, []int)

func (*SearchCallSetsResponse) GetCallSets 

func (m *SearchCallSetsResponse) GetCallSets() []*CallSet

func (*SearchCallSetsResponse) GetNextPageToken 

func (m *SearchCallSetsResponse) GetNextPageToken() string

func (*SearchCallSetsResponse) ProtoMessage 

func (*SearchCallSetsResponse) ProtoMessage()

func (*SearchCallSetsResponse) Reset 

func (m *SearchCallSetsResponse) Reset()

func (*SearchCallSetsResponse) String 

func (m *SearchCallSetsResponse) String() string

func (*SearchCallSetsResponse) XXX_DiscardUnknown 

func (m *SearchCallSetsResponse) XXX_DiscardUnknown()

func (*SearchCallSetsResponse) XXX_Marshal 

func (m *SearchCallSetsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*SearchCallSetsResponse) XXX_Merge 

func (m *SearchCallSetsResponse) XXX_Merge(src proto.Message)

func (*SearchCallSetsResponse) XXX_Size 

func (m *SearchCallSetsResponse) XXX_Size() int

func (*SearchCallSetsResponse) XXX_Unmarshal 

func (m *SearchCallSetsResponse) XXX_Unmarshal(b []byte) error

type SearchReadGroupSetsRequest 

type SearchReadGroupSetsRequest struct {
	// Restricts this query to read group sets within the given datasets. At least
	// one ID must be provided.
	DatasetIds []string `protobuf:"bytes,1,rep,name=dataset_ids,json=datasetIds,proto3" json:"dataset_ids,omitempty"`
	// Only return read group sets for which a substring of the name matches this
	// string.
	Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// To get the next page of results, set this parameter to the value of
	// `nextPageToken` from the previous response.
	PageToken string `protobuf:"bytes,2,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
	// The maximum number of results to return in a single page. If unspecified,
	// defaults to 256. The maximum value is 1024.
	PageSize             int32    `protobuf:"varint,4,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The read group set search request.

func (*SearchReadGroupSetsRequest) Descriptor 

func (*SearchReadGroupSetsRequest) Descriptor() ([]byte, []int)

func (*SearchReadGroupSetsRequest) GetDatasetIds 

func (m *SearchReadGroupSetsRequest) GetDatasetIds() []string

func (*SearchReadGroupSetsRequest) GetName 

func (m *SearchReadGroupSetsRequest) GetName() string

func (*SearchReadGroupSetsRequest) GetPageSize 

func (m *SearchReadGroupSetsRequest) GetPageSize() int32

func (*SearchReadGroupSetsRequest) GetPageToken 

func (m *SearchReadGroupSetsRequest) GetPageToken() string

func (*SearchReadGroupSetsRequest) ProtoMessage 

func (*SearchReadGroupSetsRequest) ProtoMessage()

func (*SearchReadGroupSetsRequest) Reset 

func (m *SearchReadGroupSetsRequest) Reset()

func (*SearchReadGroupSetsRequest) String 

func (m *SearchReadGroupSetsRequest) String() string

func (*SearchReadGroupSetsRequest) XXX_DiscardUnknown 

func (m *SearchReadGroupSetsRequest) XXX_DiscardUnknown()

func (*SearchReadGroupSetsRequest) XXX_Marshal 

func (m *SearchReadGroupSetsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*SearchReadGroupSetsRequest) XXX_Merge 

func (m *SearchReadGroupSetsRequest) XXX_Merge(src proto.Message)

func (*SearchReadGroupSetsRequest) XXX_Size 

func (m *SearchReadGroupSetsRequest) XXX_Size() int

func (*SearchReadGroupSetsRequest) XXX_Unmarshal 

func (m *SearchReadGroupSetsRequest) XXX_Unmarshal(b []byte) error

type SearchReadGroupSetsResponse 

type SearchReadGroupSetsResponse struct {
	// The list of matching read group sets.
	ReadGroupSets []*ReadGroupSet `protobuf:"bytes,1,rep,name=read_group_sets,json=readGroupSets,proto3" json:"read_group_sets,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// Provide this value in a subsequent request to return the next page of
	// results. This field will be empty if there aren't any additional results.
	NextPageToken        string   `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The read group set search response.

func (*SearchReadGroupSetsResponse) Descriptor 

func (*SearchReadGroupSetsResponse) Descriptor() ([]byte, []int)

func (*SearchReadGroupSetsResponse) GetNextPageToken 

func (m *SearchReadGroupSetsResponse) GetNextPageToken() string

func (*SearchReadGroupSetsResponse) GetReadGroupSets 

func (m *SearchReadGroupSetsResponse) GetReadGroupSets() []*ReadGroupSet

func (*SearchReadGroupSetsResponse) ProtoMessage 

func (*SearchReadGroupSetsResponse) ProtoMessage()

func (*SearchReadGroupSetsResponse) Reset 

func (m *SearchReadGroupSetsResponse) Reset()

func (*SearchReadGroupSetsResponse) String 

func (m *SearchReadGroupSetsResponse) String() string

func (*SearchReadGroupSetsResponse) XXX_DiscardUnknown 

func (m *SearchReadGroupSetsResponse) XXX_DiscardUnknown()

func (*SearchReadGroupSetsResponse) XXX_Marshal 

func (m *SearchReadGroupSetsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*SearchReadGroupSetsResponse) XXX_Merge 

func (m *SearchReadGroupSetsResponse) XXX_Merge(src proto.Message)

func (*SearchReadGroupSetsResponse) XXX_Size 

func (m *SearchReadGroupSetsResponse) XXX_Size() int

func (*SearchReadGroupSetsResponse) XXX_Unmarshal 

func (m *SearchReadGroupSetsResponse) XXX_Unmarshal(b []byte) error

type SearchReadsRequest 

type SearchReadsRequest struct {
	// The IDs of the read groups sets within which to search for reads. All
	// specified read group sets must be aligned against a common set of reference
	// sequences; this defines the genomic coordinates for the query. Must specify
	// one of `readGroupSetIds` or `readGroupIds`.
	ReadGroupSetIds []string `protobuf:"bytes,1,rep,name=read_group_set_ids,json=readGroupSetIds,proto3" json:"read_group_set_ids,omitempty"`
	// The IDs of the read groups within which to search for reads. All specified
	// read groups must belong to the same read group sets. Must specify one of
	// `readGroupSetIds` or `readGroupIds`.
	ReadGroupIds []string `protobuf:"bytes,5,rep,name=read_group_ids,json=readGroupIds,proto3" json:"read_group_ids,omitempty"`
	// The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to
	// `*`, only unmapped reads are returned. If unspecified, all reads (mapped
	// and unmapped) are returned.
	ReferenceName string `protobuf:"bytes,7,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
	// The start position of the range on the reference, 0-based inclusive. If
	// specified, `referenceName` must also be specified.
	Start int64 `protobuf:"varint,8,opt,name=start,proto3" json:"start,omitempty"`
	// The end position of the range on the reference, 0-based exclusive. If
	// specified, `referenceName` must also be specified.
	End int64 `protobuf:"varint,9,opt,name=end,proto3" json:"end,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// To get the next page of results, set this parameter to the value of
	// `nextPageToken` from the previous response.
	PageToken string `protobuf:"bytes,3,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
	// The maximum number of results to return in a single page. If unspecified,
	// defaults to 256. The maximum value is 2048.
	PageSize             int32    `protobuf:"varint,4,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The read search request.

func (*SearchReadsRequest) Descriptor 

func (*SearchReadsRequest) Descriptor() ([]byte, []int)

func (*SearchReadsRequest) GetEnd 

func (m *SearchReadsRequest) GetEnd() int64

func (*SearchReadsRequest) GetPageSize 

func (m *SearchReadsRequest) GetPageSize() int32

func (*SearchReadsRequest) GetPageToken 

func (m *SearchReadsRequest) GetPageToken() string

func (*SearchReadsRequest) GetReadGroupIds 

func (m *SearchReadsRequest) GetReadGroupIds() []string

func (*SearchReadsRequest) GetReadGroupSetIds 

func (m *SearchReadsRequest) GetReadGroupSetIds() []string

func (*SearchReadsRequest) GetReferenceName 

func (m *SearchReadsRequest) GetReferenceName() string

func (*SearchReadsRequest) GetStart 

func (m *SearchReadsRequest) GetStart() int64

func (*SearchReadsRequest) ProtoMessage 

func (*SearchReadsRequest) ProtoMessage()

func (*SearchReadsRequest) Reset 

func (m *SearchReadsRequest) Reset()

func (*SearchReadsRequest) String 

func (m *SearchReadsRequest) String() string

func (*SearchReadsRequest) XXX_DiscardUnknown 

func (m *SearchReadsRequest) XXX_DiscardUnknown()

func (*SearchReadsRequest) XXX_Marshal 

func (m *SearchReadsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*SearchReadsRequest) XXX_Merge 

func (m *SearchReadsRequest) XXX_Merge(src proto.Message)

func (*SearchReadsRequest) XXX_Size 

func (m *SearchReadsRequest) XXX_Size() int

func (*SearchReadsRequest) XXX_Unmarshal 

func (m *SearchReadsRequest) XXX_Unmarshal(b []byte) error

type SearchReadsResponse 

type SearchReadsResponse struct {
	// The list of matching alignments sorted by mapped genomic coordinate,
	// if any, ascending in position within the same reference. Unmapped reads,
	// which have no position, are returned contiguously and are sorted in
	// ascending lexicographic order by fragment name.
	Alignments []*Read `protobuf:"bytes,1,rep,name=alignments,proto3" json:"alignments,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// Provide this value in a subsequent request to return the next page of
	// results. This field will be empty if there aren't any additional results.
	NextPageToken        string   `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The read search response.

func (*SearchReadsResponse) Descriptor 

func (*SearchReadsResponse) Descriptor() ([]byte, []int)

func (*SearchReadsResponse) GetAlignments 

func (m *SearchReadsResponse) GetAlignments() []*Read

func (*SearchReadsResponse) GetNextPageToken 

func (m *SearchReadsResponse) GetNextPageToken() string

func (*SearchReadsResponse) ProtoMessage 

func (*SearchReadsResponse) ProtoMessage()

func (*SearchReadsResponse) Reset 

func (m *SearchReadsResponse) Reset()

func (*SearchReadsResponse) String 

func (m *SearchReadsResponse) String() string

func (*SearchReadsResponse) XXX_DiscardUnknown 

func (m *SearchReadsResponse) XXX_DiscardUnknown()

func (*SearchReadsResponse) XXX_Marshal 

func (m *SearchReadsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*SearchReadsResponse) XXX_Merge 

func (m *SearchReadsResponse) XXX_Merge(src proto.Message)

func (*SearchReadsResponse) XXX_Size 

func (m *SearchReadsResponse) XXX_Size() int

func (*SearchReadsResponse) XXX_Unmarshal 

func (m *SearchReadsResponse) XXX_Unmarshal(b []byte) error

type SearchReferenceSetsRequest 

type SearchReferenceSetsRequest struct {
	// If present, return reference sets for which the
	// [md5checksum][google.genomics.v1.ReferenceSet.md5checksum] matches exactly.
	Md5Checksums []string `protobuf:"bytes,1,rep,name=md5checksums,proto3" json:"md5checksums,omitempty"`
	// If present, return reference sets for which a prefix of any of
	// [sourceAccessions][google.genomics.v1.ReferenceSet.source_accessions]
	// match any of these strings. Accession numbers typically have a main number
	// and a version, for example `NC_000001.11`.
	Accessions []string `protobuf:"bytes,2,rep,name=accessions,proto3" json:"accessions,omitempty"`
	// If present, return reference sets for which a substring of their
	// `assemblyId` matches this string (case insensitive).
	AssemblyId string `protobuf:"bytes,3,opt,name=assembly_id,json=assemblyId,proto3" json:"assembly_id,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// To get the next page of results, set this parameter to the value of
	// `nextPageToken` from the previous response.
	PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
	// The maximum number of results to return in a single page. If unspecified,
	// defaults to 1024. The maximum value is 4096.
	PageSize             int32    `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*SearchReferenceSetsRequest) Descriptor 

func (*SearchReferenceSetsRequest) Descriptor() ([]byte, []int)

func (*SearchReferenceSetsRequest) GetAccessions 

func (m *SearchReferenceSetsRequest) GetAccessions() []string

func (*SearchReferenceSetsRequest) GetAssemblyId 

func (m *SearchReferenceSetsRequest) GetAssemblyId() string

func (*SearchReferenceSetsRequest) GetMd5Checksums 

func (m *SearchReferenceSetsRequest) GetMd5Checksums() []string

func (*SearchReferenceSetsRequest) GetPageSize 

func (m *SearchReferenceSetsRequest) GetPageSize() int32

func (*SearchReferenceSetsRequest) GetPageToken 

func (m *SearchReferenceSetsRequest) GetPageToken() string

func (*SearchReferenceSetsRequest) ProtoMessage 

func (*SearchReferenceSetsRequest) ProtoMessage()

func (*SearchReferenceSetsRequest) Reset 

func (m *SearchReferenceSetsRequest) Reset()

func (*SearchReferenceSetsRequest) String 

func (m *SearchReferenceSetsRequest) String() string

func (*SearchReferenceSetsRequest) XXX_DiscardUnknown 

func (m *SearchReferenceSetsRequest) XXX_DiscardUnknown()

func (*SearchReferenceSetsRequest) XXX_Marshal 

func (m *SearchReferenceSetsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*SearchReferenceSetsRequest) XXX_Merge 

func (m *SearchReferenceSetsRequest) XXX_Merge(src proto.Message)

func (*SearchReferenceSetsRequest) XXX_Size 

func (m *SearchReferenceSetsRequest) XXX_Size() int

func (*SearchReferenceSetsRequest) XXX_Unmarshal 

func (m *SearchReferenceSetsRequest) XXX_Unmarshal(b []byte) error

type SearchReferenceSetsResponse 

type SearchReferenceSetsResponse struct {
	// The matching references sets.
	ReferenceSets []*ReferenceSet `protobuf:"bytes,1,rep,name=reference_sets,json=referenceSets,proto3" json:"reference_sets,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// Provide this value in a subsequent request to return the next page of
	// results. This field will be empty if there aren't any additional results.
	NextPageToken        string   `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*SearchReferenceSetsResponse) Descriptor 

func (*SearchReferenceSetsResponse) Descriptor() ([]byte, []int)

func (*SearchReferenceSetsResponse) GetNextPageToken 

func (m *SearchReferenceSetsResponse) GetNextPageToken() string

func (*SearchReferenceSetsResponse) GetReferenceSets 

func (m *SearchReferenceSetsResponse) GetReferenceSets() []*ReferenceSet

func (*SearchReferenceSetsResponse) ProtoMessage 

func (*SearchReferenceSetsResponse) ProtoMessage()

func (*SearchReferenceSetsResponse) Reset 

func (m *SearchReferenceSetsResponse) Reset()

func (*SearchReferenceSetsResponse) String 

func (m *SearchReferenceSetsResponse) String() string

func (*SearchReferenceSetsResponse) XXX_DiscardUnknown 

func (m *SearchReferenceSetsResponse) XXX_DiscardUnknown()

func (*SearchReferenceSetsResponse) XXX_Marshal 

func (m *SearchReferenceSetsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*SearchReferenceSetsResponse) XXX_Merge 

func (m *SearchReferenceSetsResponse) XXX_Merge(src proto.Message)

func (*SearchReferenceSetsResponse) XXX_Size 

func (m *SearchReferenceSetsResponse) XXX_Size() int

func (*SearchReferenceSetsResponse) XXX_Unmarshal 

func (m *SearchReferenceSetsResponse) XXX_Unmarshal(b []byte) error

type SearchReferencesRequest 

type SearchReferencesRequest struct {
	// If present, return references for which the
	// [md5checksum][google.genomics.v1.Reference.md5checksum] matches exactly.
	Md5Checksums []string `protobuf:"bytes,1,rep,name=md5checksums,proto3" json:"md5checksums,omitempty"`
	// If present, return references for which a prefix of any of
	// [sourceAccessions][google.genomics.v1.Reference.source_accessions] match
	// any of these strings. Accession numbers typically have a main number and a
	// version, for example `GCF_000001405.26`.
	Accessions []string `protobuf:"bytes,2,rep,name=accessions,proto3" json:"accessions,omitempty"`
	// If present, return only references which belong to this reference set.
	ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// To get the next page of results, set this parameter to the value of
	// `nextPageToken` from the previous response.
	PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
	// The maximum number of results to return in a single page. If unspecified,
	// defaults to 1024. The maximum value is 4096.
	PageSize             int32    `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*SearchReferencesRequest) Descriptor 

func (*SearchReferencesRequest) Descriptor() ([]byte, []int)

func (*SearchReferencesRequest) GetAccessions 

func (m *SearchReferencesRequest) GetAccessions() []string

func (*SearchReferencesRequest) GetMd5Checksums 

func (m *SearchReferencesRequest) GetMd5Checksums() []string

func (*SearchReferencesRequest) GetPageSize 

func (m *SearchReferencesRequest) GetPageSize() int32

func (*SearchReferencesRequest) GetPageToken 

func (m *SearchReferencesRequest) GetPageToken() string

func (*SearchReferencesRequest) GetReferenceSetId 

func (m *SearchReferencesRequest) GetReferenceSetId() string

func (*SearchReferencesRequest) ProtoMessage 

func (*SearchReferencesRequest) ProtoMessage()

func (*SearchReferencesRequest) Reset 

func (m *SearchReferencesRequest) Reset()

func (*SearchReferencesRequest) String 

func (m *SearchReferencesRequest) String() string

func (*SearchReferencesRequest) XXX_DiscardUnknown 

func (m *SearchReferencesRequest) XXX_DiscardUnknown()

func (*SearchReferencesRequest) XXX_Marshal 

func (m *SearchReferencesRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*SearchReferencesRequest) XXX_Merge 

func (m *SearchReferencesRequest) XXX_Merge(src proto.Message)

func (*SearchReferencesRequest) XXX_Size 

func (m *SearchReferencesRequest) XXX_Size() int

func (*SearchReferencesRequest) XXX_Unmarshal 

func (m *SearchReferencesRequest) XXX_Unmarshal(b []byte) error

type SearchReferencesResponse 

type SearchReferencesResponse struct {
	// The matching references.
	References []*Reference `protobuf:"bytes,1,rep,name=references,proto3" json:"references,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// Provide this value in a subsequent request to return the next page of
	// results. This field will be empty if there aren't any additional results.
	NextPageToken        string   `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*SearchReferencesResponse) Descriptor 

func (*SearchReferencesResponse) Descriptor() ([]byte, []int)

func (*SearchReferencesResponse) GetNextPageToken 

func (m *SearchReferencesResponse) GetNextPageToken() string

func (*SearchReferencesResponse) GetReferences 

func (m *SearchReferencesResponse) GetReferences() []*Reference

func (*SearchReferencesResponse) ProtoMessage 

func (*SearchReferencesResponse) ProtoMessage()

func (*SearchReferencesResponse) Reset 

func (m *SearchReferencesResponse) Reset()

func (*SearchReferencesResponse) String 

func (m *SearchReferencesResponse) String() string

func (*SearchReferencesResponse) XXX_DiscardUnknown 

func (m *SearchReferencesResponse) XXX_DiscardUnknown()

func (*SearchReferencesResponse) XXX_Marshal 

func (m *SearchReferencesResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*SearchReferencesResponse) XXX_Merge 

func (m *SearchReferencesResponse) XXX_Merge(src proto.Message)

func (*SearchReferencesResponse) XXX_Size 

func (m *SearchReferencesResponse) XXX_Size() int

func (*SearchReferencesResponse) XXX_Unmarshal 

func (m *SearchReferencesResponse) XXX_Unmarshal(b []byte) error

type SearchVariantSetsRequest 

type SearchVariantSetsRequest struct {
	// Exactly one dataset ID must be provided here. Only variant sets which
	// belong to this dataset will be returned.
	DatasetIds []string `protobuf:"bytes,1,rep,name=dataset_ids,json=datasetIds,proto3" json:"dataset_ids,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// To get the next page of results, set this parameter to the value of
	// `nextPageToken` from the previous response.
	PageToken string `protobuf:"bytes,2,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
	// The maximum number of results to return in a single page. If unspecified,
	// defaults to 1024.
	PageSize             int32    `protobuf:"varint,3,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The search variant sets request.

func (*SearchVariantSetsRequest) Descriptor 

func (*SearchVariantSetsRequest) Descriptor() ([]byte, []int)

func (*SearchVariantSetsRequest) GetDatasetIds 

func (m *SearchVariantSetsRequest) GetDatasetIds() []string

func (*SearchVariantSetsRequest) GetPageSize 

func (m *SearchVariantSetsRequest) GetPageSize() int32

func (*SearchVariantSetsRequest) GetPageToken 

func (m *SearchVariantSetsRequest) GetPageToken() string

func (*SearchVariantSetsRequest) ProtoMessage 

func (*SearchVariantSetsRequest) ProtoMessage()

func (*SearchVariantSetsRequest) Reset 

func (m *SearchVariantSetsRequest) Reset()

func (*SearchVariantSetsRequest) String 

func (m *SearchVariantSetsRequest) String() string

func (*SearchVariantSetsRequest) XXX_DiscardUnknown 

func (m *SearchVariantSetsRequest) XXX_DiscardUnknown()

func (*SearchVariantSetsRequest) XXX_Marshal 

func (m *SearchVariantSetsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*SearchVariantSetsRequest) XXX_Merge 

func (m *SearchVariantSetsRequest) XXX_Merge(src proto.Message)

func (*SearchVariantSetsRequest) XXX_Size 

func (m *SearchVariantSetsRequest) XXX_Size() int

func (*SearchVariantSetsRequest) XXX_Unmarshal 

func (m *SearchVariantSetsRequest) XXX_Unmarshal(b []byte) error

type SearchVariantSetsResponse 

type SearchVariantSetsResponse struct {
	// The variant sets belonging to the requested dataset.
	VariantSets []*VariantSet `protobuf:"bytes,1,rep,name=variant_sets,json=variantSets,proto3" json:"variant_sets,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// Provide this value in a subsequent request to return the next page of
	// results. This field will be empty if there aren't any additional results.
	NextPageToken        string   `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The search variant sets response.

func (*SearchVariantSetsResponse) Descriptor 

func (*SearchVariantSetsResponse) Descriptor() ([]byte, []int)

func (*SearchVariantSetsResponse) GetNextPageToken 

func (m *SearchVariantSetsResponse) GetNextPageToken() string

func (*SearchVariantSetsResponse) GetVariantSets 

func (m *SearchVariantSetsResponse) GetVariantSets() []*VariantSet

func (*SearchVariantSetsResponse) ProtoMessage 

func (*SearchVariantSetsResponse) ProtoMessage()

func (*SearchVariantSetsResponse) Reset 

func (m *SearchVariantSetsResponse) Reset()

func (*SearchVariantSetsResponse) String 

func (m *SearchVariantSetsResponse) String() string

func (*SearchVariantSetsResponse) XXX_DiscardUnknown 

func (m *SearchVariantSetsResponse) XXX_DiscardUnknown()

func (*SearchVariantSetsResponse) XXX_Marshal 

func (m *SearchVariantSetsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*SearchVariantSetsResponse) XXX_Merge 

func (m *SearchVariantSetsResponse) XXX_Merge(src proto.Message)

func (*SearchVariantSetsResponse) XXX_Size 

func (m *SearchVariantSetsResponse) XXX_Size() int

func (*SearchVariantSetsResponse) XXX_Unmarshal 

func (m *SearchVariantSetsResponse) XXX_Unmarshal(b []byte) error

type SearchVariantsRequest 

type SearchVariantsRequest struct {
	// At most one variant set ID must be provided. Only variants from this
	// variant set will be returned. If omitted, a call set id must be included in
	// the request.
	VariantSetIds []string `protobuf:"bytes,1,rep,name=variant_set_ids,json=variantSetIds,proto3" json:"variant_set_ids,omitempty"`
	// Only return variants which have exactly this name.
	VariantName string `protobuf:"bytes,2,opt,name=variant_name,json=variantName,proto3" json:"variant_name,omitempty"`
	// Only return variant calls which belong to call sets with these ids.
	// Leaving this blank returns all variant calls. If a variant has no
	// calls belonging to any of these call sets, it won't be returned at all.
	CallSetIds []string `protobuf:"bytes,3,rep,name=call_set_ids,json=callSetIds,proto3" json:"call_set_ids,omitempty"`
	// Required. Only return variants in this reference sequence.
	ReferenceName string `protobuf:"bytes,4,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
	// The beginning of the window (0-based, inclusive) for which
	// overlapping variants should be returned. If unspecified, defaults to 0.
	Start int64 `protobuf:"varint,5,opt,name=start,proto3" json:"start,omitempty"`
	// The end of the window, 0-based exclusive. If unspecified or 0, defaults to
	// the length of the reference.
	End int64 `protobuf:"varint,6,opt,name=end,proto3" json:"end,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// To get the next page of results, set this parameter to the value of
	// `nextPageToken` from the previous response.
	PageToken string `protobuf:"bytes,7,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
	// The maximum number of variants to return in a single page. If unspecified,
	// defaults to 5000. The maximum value is 10000.
	PageSize int32 `protobuf:"varint,8,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
	// The maximum number of calls to return in a single page. Note that this
	// limit may be exceeded in the event that a matching variant contains more
	// calls than the requested maximum. If unspecified, defaults to 5000. The
	// maximum value is 10000.
	MaxCalls             int32    `protobuf:"varint,9,opt,name=max_calls,json=maxCalls,proto3" json:"max_calls,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The variant search request.

func (*SearchVariantsRequest) Descriptor 

func (*SearchVariantsRequest) Descriptor() ([]byte, []int)

func (*SearchVariantsRequest) GetCallSetIds 

func (m *SearchVariantsRequest) GetCallSetIds() []string

func (*SearchVariantsRequest) GetEnd 

func (m *SearchVariantsRequest) GetEnd() int64

func (*SearchVariantsRequest) GetMaxCalls 

func (m *SearchVariantsRequest) GetMaxCalls() int32

func (*SearchVariantsRequest) GetPageSize 

func (m *SearchVariantsRequest) GetPageSize() int32

func (*SearchVariantsRequest) GetPageToken 

func (m *SearchVariantsRequest) GetPageToken() string

func (*SearchVariantsRequest) GetReferenceName 

func (m *SearchVariantsRequest) GetReferenceName() string

func (*SearchVariantsRequest) GetStart 

func (m *SearchVariantsRequest) GetStart() int64

func (*SearchVariantsRequest) GetVariantName 

func (m *SearchVariantsRequest) GetVariantName() string

func (*SearchVariantsRequest) GetVariantSetIds 

func (m *SearchVariantsRequest) GetVariantSetIds() []string

func (*SearchVariantsRequest) ProtoMessage 

func (*SearchVariantsRequest) ProtoMessage()

func (*SearchVariantsRequest) Reset 

func (m *SearchVariantsRequest) Reset()

func (*SearchVariantsRequest) String 

func (m *SearchVariantsRequest) String() string

func (*SearchVariantsRequest) XXX_DiscardUnknown 

func (m *SearchVariantsRequest) XXX_DiscardUnknown()

func (*SearchVariantsRequest) XXX_Marshal 

func (m *SearchVariantsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*SearchVariantsRequest) XXX_Merge 

func (m *SearchVariantsRequest) XXX_Merge(src proto.Message)

func (*SearchVariantsRequest) XXX_Size 

func (m *SearchVariantsRequest) XXX_Size() int

func (*SearchVariantsRequest) XXX_Unmarshal 

func (m *SearchVariantsRequest) XXX_Unmarshal(b []byte) error

type SearchVariantsResponse 

type SearchVariantsResponse struct {
	// The list of matching Variants.
	Variants []*Variant `protobuf:"bytes,1,rep,name=variants,proto3" json:"variants,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// Provide this value in a subsequent request to return the next page of
	// results. This field will be empty if there aren't any additional results.
	NextPageToken        string   `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The variant search response.

func (*SearchVariantsResponse) Descriptor 

func (*SearchVariantsResponse) Descriptor() ([]byte, []int)

func (*SearchVariantsResponse) GetNextPageToken 

func (m *SearchVariantsResponse) GetNextPageToken() string

func (*SearchVariantsResponse) GetVariants 

func (m *SearchVariantsResponse) GetVariants() []*Variant

func (*SearchVariantsResponse) ProtoMessage 

func (*SearchVariantsResponse) ProtoMessage()

func (*SearchVariantsResponse) Reset 

func (m *SearchVariantsResponse) Reset()

func (*SearchVariantsResponse) String 

func (m *SearchVariantsResponse) String() string

func (*SearchVariantsResponse) XXX_DiscardUnknown 

func (m *SearchVariantsResponse) XXX_DiscardUnknown()

func (*SearchVariantsResponse) XXX_Marshal 

func (m *SearchVariantsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*SearchVariantsResponse) XXX_Merge 

func (m *SearchVariantsResponse) XXX_Merge(src proto.Message)

func (*SearchVariantsResponse) XXX_Size 

func (m *SearchVariantsResponse) XXX_Size() int

func (*SearchVariantsResponse) XXX_Unmarshal 

func (m *SearchVariantsResponse) XXX_Unmarshal(b []byte) error

type StreamReadsRequest 

type StreamReadsRequest struct {
	// The Google Cloud project ID which will be billed
	// for this access. The caller must have WRITE access to this project.
	// Required.
	ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
	// The ID of the read group set from which to stream reads.
	ReadGroupSetId string `protobuf:"bytes,2,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
	// The reference sequence name, for example `chr1`,
	// `1`, or `chrX`. If set to *, only unmapped reads are
	// returned.
	ReferenceName string `protobuf:"bytes,3,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
	// The start position of the range on the reference, 0-based inclusive. If
	// specified, `referenceName` must also be specified.
	Start int64 `protobuf:"varint,4,opt,name=start,proto3" json:"start,omitempty"`
	// The end position of the range on the reference, 0-based exclusive. If
	// specified, `referenceName` must also be specified.
	End int64 `protobuf:"varint,5,opt,name=end,proto3" json:"end,omitempty"`
	// Restricts results to a shard containing approximately `1/totalShards`
	// of the normal response payload for this query. Results from a sharded
	// request are disjoint from those returned by all queries which differ only
	// in their shard parameter. A shard may yield 0 results; this is especially
	// likely for large values of `totalShards`.
	//
	// Valid values are `[0, totalShards)`.
	Shard int32 `protobuf:"varint,6,opt,name=shard,proto3" json:"shard,omitempty"`
	// Specifying `totalShards` causes a disjoint subset of the normal response
	// payload to be returned for each query with a unique `shard` parameter
	// specified. A best effort is made to yield equally sized shards. Sharding
	// can be used to distribute processing amongst workers, where each worker is
	// assigned a unique `shard` number and all workers specify the same
	// `totalShards` number. The union of reads returned for all sharded queries
	// `[0, totalShards)` is equal to those returned by a single unsharded query.
	//
	// Queries for different values of `totalShards` with common divisors will
	// share shard boundaries. For example, streaming `shard` 2 of 5
	// `totalShards` yields the same results as streaming `shard`s 4 and 5 of 10
	// `totalShards`. This property can be leveraged for adaptive retries.
	TotalShards          int32    `protobuf:"varint,7,opt,name=total_shards,json=totalShards,proto3" json:"total_shards,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The stream reads request.

func (*StreamReadsRequest) Descriptor 

func (*StreamReadsRequest) Descriptor() ([]byte, []int)

func (*StreamReadsRequest) GetEnd 

func (m *StreamReadsRequest) GetEnd() int64

func (*StreamReadsRequest) GetProjectId 

func (m *StreamReadsRequest) GetProjectId() string

func (*StreamReadsRequest) GetReadGroupSetId 

func (m *StreamReadsRequest) GetReadGroupSetId() string

func (*StreamReadsRequest) GetReferenceName 

func (m *StreamReadsRequest) GetReferenceName() string

func (*StreamReadsRequest) GetShard 

func (m *StreamReadsRequest) GetShard() int32

func (*StreamReadsRequest) GetStart 

func (m *StreamReadsRequest) GetStart() int64

func (*StreamReadsRequest) GetTotalShards 

func (m *StreamReadsRequest) GetTotalShards() int32

func (*StreamReadsRequest) ProtoMessage 

func (*StreamReadsRequest) ProtoMessage()

func (*StreamReadsRequest) Reset 

func (m *StreamReadsRequest) Reset()

func (*StreamReadsRequest) String 

func (m *StreamReadsRequest) String() string

func (*StreamReadsRequest) XXX_DiscardUnknown 

func (m *StreamReadsRequest) XXX_DiscardUnknown()

func (*StreamReadsRequest) XXX_Marshal 

func (m *StreamReadsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*StreamReadsRequest) XXX_Merge 

func (m *StreamReadsRequest) XXX_Merge(src proto.Message)

func (*StreamReadsRequest) XXX_Size 

func (m *StreamReadsRequest) XXX_Size() int

func (*StreamReadsRequest) XXX_Unmarshal 

func (m *StreamReadsRequest) XXX_Unmarshal(b []byte) error

type StreamReadsResponse 

type StreamReadsResponse struct {
	Alignments           []*Read  `protobuf:"bytes,1,rep,name=alignments,proto3" json:"alignments,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*StreamReadsResponse) Descriptor 

func (*StreamReadsResponse) Descriptor() ([]byte, []int)

func (*StreamReadsResponse) GetAlignments 

func (m *StreamReadsResponse) GetAlignments() []*Read

func (*StreamReadsResponse) ProtoMessage 

func (*StreamReadsResponse) ProtoMessage()

func (*StreamReadsResponse) Reset 

func (m *StreamReadsResponse) Reset()

func (*StreamReadsResponse) String 

func (m *StreamReadsResponse) String() string

func (*StreamReadsResponse) XXX_DiscardUnknown 

func (m *StreamReadsResponse) XXX_DiscardUnknown()

func (*StreamReadsResponse) XXX_Marshal 

func (m *StreamReadsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*StreamReadsResponse) XXX_Merge 

func (m *StreamReadsResponse) XXX_Merge(src proto.Message)

func (*StreamReadsResponse) XXX_Size 

func (m *StreamReadsResponse) XXX_Size() int

func (*StreamReadsResponse) XXX_Unmarshal 

func (m *StreamReadsResponse) XXX_Unmarshal(b []byte) error

type StreamVariantsRequest 

type StreamVariantsRequest struct {
	// The Google Cloud project ID which will be billed
	// for this access. The caller must have WRITE access to this project.
	// Required.
	ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
	// The variant set ID from which to stream variants.
	VariantSetId string `protobuf:"bytes,2,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
	// Only return variant calls which belong to call sets with these IDs.
	// Leaving this blank returns all variant calls.
	CallSetIds []string `protobuf:"bytes,3,rep,name=call_set_ids,json=callSetIds,proto3" json:"call_set_ids,omitempty"`
	// Required. Only return variants in this reference sequence.
	ReferenceName string `protobuf:"bytes,4,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
	// The beginning of the window (0-based, inclusive) for which
	// overlapping variants should be returned.
	Start int64 `protobuf:"varint,5,opt,name=start,proto3" json:"start,omitempty"`
	// The end of the window (0-based, exclusive) for which overlapping
	// variants should be returned.
	End                  int64    `protobuf:"varint,6,opt,name=end,proto3" json:"end,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

The stream variants request.

func (*StreamVariantsRequest) Descriptor 

func (*StreamVariantsRequest) Descriptor() ([]byte, []int)

func (*StreamVariantsRequest) GetCallSetIds 

func (m *StreamVariantsRequest) GetCallSetIds() []string

func (*StreamVariantsRequest) GetEnd 

func (m *StreamVariantsRequest) GetEnd() int64

func (*StreamVariantsRequest) GetProjectId 

func (m *StreamVariantsRequest) GetProjectId() string

func (*StreamVariantsRequest) GetReferenceName 

func (m *StreamVariantsRequest) GetReferenceName() string

func (*StreamVariantsRequest) GetStart 

func (m *StreamVariantsRequest) GetStart() int64

func (*StreamVariantsRequest) GetVariantSetId 

func (m *StreamVariantsRequest) GetVariantSetId() string

func (*StreamVariantsRequest) ProtoMessage 

func (*StreamVariantsRequest) ProtoMessage()

func (*StreamVariantsRequest) Reset 

func (m *StreamVariantsRequest) Reset()

func (*StreamVariantsRequest) String 

func (m *StreamVariantsRequest) String() string

func (*StreamVariantsRequest) XXX_DiscardUnknown 

func (m *StreamVariantsRequest) XXX_DiscardUnknown()

func (*StreamVariantsRequest) XXX_Marshal 

func (m *StreamVariantsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*StreamVariantsRequest) XXX_Merge 

func (m *StreamVariantsRequest) XXX_Merge(src proto.Message)

func (*StreamVariantsRequest) XXX_Size 

func (m *StreamVariantsRequest) XXX_Size() int

func (*StreamVariantsRequest) XXX_Unmarshal 

func (m *StreamVariantsRequest) XXX_Unmarshal(b []byte) error

type StreamVariantsResponse 

type StreamVariantsResponse struct {
	Variants             []*Variant `protobuf:"bytes,1,rep,name=variants,proto3" json:"variants,omitempty"`
	XXX_NoUnkeyedLiteral struct{}   `json:"-"`
	XXX_unrecognized     []byte     `json:"-"`
	XXX_sizecache        int32      `json:"-"`
}

func (*StreamVariantsResponse) Descriptor 

func (*StreamVariantsResponse) Descriptor() ([]byte, []int)

func (*StreamVariantsResponse) GetVariants 

func (m *StreamVariantsResponse) GetVariants() []*Variant

func (*StreamVariantsResponse) ProtoMessage 

func (*StreamVariantsResponse) ProtoMessage()

func (*StreamVariantsResponse) Reset 

func (m *StreamVariantsResponse) Reset()

func (*StreamVariantsResponse) String 

func (m *StreamVariantsResponse) String() string

func (*StreamVariantsResponse) XXX_DiscardUnknown 

func (m *StreamVariantsResponse) XXX_DiscardUnknown()

func (*StreamVariantsResponse) XXX_Marshal 

func (m *StreamVariantsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*StreamVariantsResponse) XXX_Merge 

func (m *StreamVariantsResponse) XXX_Merge(src proto.Message)

func (*StreamVariantsResponse) XXX_Size 

func (m *StreamVariantsResponse) XXX_Size() int

func (*StreamVariantsResponse) XXX_Unmarshal 

func (m *StreamVariantsResponse) XXX_Unmarshal(b []byte) error

type StreamingReadServiceClient 

type StreamingReadServiceClient interface {
	// Returns a stream of all the reads matching the search request, ordered
	// by reference name, position, and ID.
	StreamReads(ctx context.Context, in *StreamReadsRequest, opts ...grpc.CallOption) (StreamingReadService_StreamReadsClient, error)
}

StreamingReadServiceClient is the client API for StreamingReadService service.

For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.

func NewStreamingReadServiceClient 

func NewStreamingReadServiceClient(cc *grpc.ClientConn) StreamingReadServiceClient

type StreamingReadServiceServer 

type StreamingReadServiceServer interface {
	// Returns a stream of all the reads matching the search request, ordered
	// by reference name, position, and ID.
	StreamReads(*StreamReadsRequest, StreamingReadService_StreamReadsServer) error
}

StreamingReadServiceServer is the server API for StreamingReadService service.

type StreamingReadService_StreamReadsClient 

type StreamingReadService_StreamReadsClient interface {
	Recv() (*StreamReadsResponse, error)
	grpc.ClientStream
}

type StreamingReadService_StreamReadsServer 

type StreamingReadService_StreamReadsServer interface {
	Send(*StreamReadsResponse) error
	grpc.ServerStream
}

type StreamingVariantServiceClient 

type StreamingVariantServiceClient interface {
	// Returns a stream of all the variants matching the search request, ordered
	// by reference name, position, and ID.
	StreamVariants(ctx context.Context, in *StreamVariantsRequest, opts ...grpc.CallOption) (StreamingVariantService_StreamVariantsClient, error)
}

StreamingVariantServiceClient is the client API for StreamingVariantService service.

For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.

func NewStreamingVariantServiceClient 

func NewStreamingVariantServiceClient(cc *grpc.ClientConn) StreamingVariantServiceClient

type StreamingVariantServiceServer 

type StreamingVariantServiceServer interface {
	// Returns a stream of all the variants matching the search request, ordered
	// by reference name, position, and ID.
	StreamVariants(*StreamVariantsRequest, StreamingVariantService_StreamVariantsServer) error
}

StreamingVariantServiceServer is the server API for StreamingVariantService service.

type StreamingVariantService_StreamVariantsClient 

type StreamingVariantService_StreamVariantsClient interface {
	Recv() (*StreamVariantsResponse, error)
	grpc.ClientStream
}

type StreamingVariantService_StreamVariantsServer 

type StreamingVariantService_StreamVariantsServer interface {
	Send(*StreamVariantsResponse) error
	grpc.ServerStream
}

type Transcript 

type Transcript struct {
	// The annotation ID of the gene from which this transcript is transcribed.
	GeneId string `protobuf:"bytes,1,opt,name=gene_id,json=geneId,proto3" json:"gene_id,omitempty"`
	// The <a href="http://en.wikipedia.org/wiki/Exon">exons</a> that compose
	// this transcript. This field should be unset for genomes where transcript
	// splicing does not occur, for example prokaryotes.
	//
	// Introns are regions of the transcript that are not included in the
	// spliced RNA product. Though not explicitly modeled here, intron ranges can
	// be deduced; all regions of this transcript that are not exons are introns.
	//
	// Exonic sequences do not necessarily code for a translational product
	// (amino acids). Only the regions of exons bounded by the
	// [codingSequence][google.genomics.v1.Transcript.coding_sequence] correspond
	// to coding DNA sequence.
	//
	// Exons are ordered by start position and may not overlap.
	Exons []*Transcript_Exon `protobuf:"bytes,2,rep,name=exons,proto3" json:"exons,omitempty"`
	// The range of the coding sequence for this transcript, if any. To determine
	// the exact ranges of coding sequence, intersect this range with those of the
	// [exons][google.genomics.v1.Transcript.exons], if any. If there are any
	// [exons][google.genomics.v1.Transcript.exons], the
	// [codingSequence][google.genomics.v1.Transcript.coding_sequence] must start
	// and end within them.
	//
	// Note that in some cases, the reference genome will not exactly match the
	// observed mRNA transcript e.g. due to variance in the source genome from
	// reference. In these cases,
	// [exon.frame][google.genomics.v1.Transcript.Exon.frame] will not necessarily
	// match the expected reference reading frame and coding exon reference bases
	// cannot necessarily be concatenated to produce the original transcript mRNA.
	CodingSequence       *Transcript_CodingSequence `protobuf:"bytes,3,opt,name=coding_sequence,json=codingSequence,proto3" json:"coding_sequence,omitempty"`
	XXX_NoUnkeyedLiteral struct{}                   `json:"-"`
	XXX_unrecognized     []byte                     `json:"-"`
	XXX_sizecache        int32                      `json:"-"`
}

A transcript represents the assertion that a particular region of the reference genome may be transcribed as RNA.

func (*Transcript) Descriptor 

func (*Transcript) Descriptor() ([]byte, []int)

func (*Transcript) GetCodingSequence 

func (m *Transcript) GetCodingSequence() *Transcript_CodingSequence

func (*Transcript) GetExons 

func (m *Transcript) GetExons() []*Transcript_Exon

func (*Transcript) GetGeneId 

func (m *Transcript) GetGeneId() string

func (*Transcript) ProtoMessage 

func (*Transcript) ProtoMessage()

func (*Transcript) Reset 

func (m *Transcript) Reset()

func (*Transcript) String 

func (m *Transcript) String() string

func (*Transcript) XXX_DiscardUnknown 

func (m *Transcript) XXX_DiscardUnknown()

func (*Transcript) XXX_Marshal 

func (m *Transcript) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*Transcript) XXX_Merge 

func (m *Transcript) XXX_Merge(src proto.Message)

func (*Transcript) XXX_Size 

func (m *Transcript) XXX_Size() int

func (*Transcript) XXX_Unmarshal 

func (m *Transcript) XXX_Unmarshal(b []byte) error

type Transcript_CodingSequence 

type Transcript_CodingSequence struct {
	// The start of the coding sequence on this annotation's reference sequence,
	// 0-based inclusive. Note that this position is relative to the reference
	// start, and *not* the containing annotation start.
	Start int64 `protobuf:"varint,1,opt,name=start,proto3" json:"start,omitempty"`
	// The end of the coding sequence on this annotation's reference sequence,
	// 0-based exclusive. Note that this position is relative to the reference
	// start, and *not* the containing annotation start.
	End                  int64    `protobuf:"varint,2,opt,name=end,proto3" json:"end,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*Transcript_CodingSequence) Descriptor 

func (*Transcript_CodingSequence) Descriptor() ([]byte, []int)

func (*Transcript_CodingSequence) GetEnd 

func (m *Transcript_CodingSequence) GetEnd() int64

func (*Transcript_CodingSequence) GetStart 

func (m *Transcript_CodingSequence) GetStart() int64

func (*Transcript_CodingSequence) ProtoMessage 

func (*Transcript_CodingSequence) ProtoMessage()

func (*Transcript_CodingSequence) Reset 

func (m *Transcript_CodingSequence) Reset()

func (*Transcript_CodingSequence) String 

func (m *Transcript_CodingSequence) String() string

func (*Transcript_CodingSequence) XXX_DiscardUnknown 

func (m *Transcript_CodingSequence) XXX_DiscardUnknown()

func (*Transcript_CodingSequence) XXX_Marshal 

func (m *Transcript_CodingSequence) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*Transcript_CodingSequence) XXX_Merge 

func (m *Transcript_CodingSequence) XXX_Merge(src proto.Message)

func (*Transcript_CodingSequence) XXX_Size 

func (m *Transcript_CodingSequence) XXX_Size() int

func (*Transcript_CodingSequence) XXX_Unmarshal 

func (m *Transcript_CodingSequence) XXX_Unmarshal(b []byte) error

type Transcript_Exon 

type Transcript_Exon struct {
	// The start position of the exon on this annotation's reference sequence,
	// 0-based inclusive. Note that this is relative to the reference start, and
	// **not** the containing annotation start.
	Start int64 `protobuf:"varint,1,opt,name=start,proto3" json:"start,omitempty"`
	// The end position of the exon on this annotation's reference sequence,
	// 0-based exclusive. Note that this is relative to the reference start, and
	// *not* the containing annotation start.
	End int64 `protobuf:"varint,2,opt,name=end,proto3" json:"end,omitempty"`
	// The frame of this exon. Contains a value of 0, 1, or 2, which indicates
	// the offset of the first coding base of the exon within the reading frame
	// of the coding DNA sequence, if any. This field is dependent on the
	// strandedness of this annotation (see
	// [Annotation.reverse_strand][google.genomics.v1.Annotation.reverse_strand]).
	// For forward stranded annotations, this offset is relative to the
	// [exon.start][google.genomics.v1.Transcript.Exon.start]. For reverse
	// strand annotations, this offset is relative to the
	// [exon.end][google.genomics.v1.Transcript.Exon.end] `- 1`.
	//
	// Unset if this exon does not intersect the coding sequence. Upon creation
	// of a transcript, the frame must be populated for all or none of the
	// coding exons.
	Frame                *wrappers.Int32Value `protobuf:"bytes,3,opt,name=frame,proto3" json:"frame,omitempty"`
	XXX_NoUnkeyedLiteral struct{}             `json:"-"`
	XXX_unrecognized     []byte               `json:"-"`
	XXX_sizecache        int32                `json:"-"`
}

func (*Transcript_Exon) Descriptor 

func (*Transcript_Exon) Descriptor() ([]byte, []int)

func (*Transcript_Exon) GetEnd 

func (m *Transcript_Exon) GetEnd() int64

func (*Transcript_Exon) GetFrame 

func (m *Transcript_Exon) GetFrame() *wrappers.Int32Value

func (*Transcript_Exon) GetStart 

func (m *Transcript_Exon) GetStart() int64

func (*Transcript_Exon) ProtoMessage 

func (*Transcript_Exon) ProtoMessage()

func (*Transcript_Exon) Reset 

func (m *Transcript_Exon) Reset()

func (*Transcript_Exon) String 

func (m *Transcript_Exon) String() string

func (*Transcript_Exon) XXX_DiscardUnknown 

func (m *Transcript_Exon) XXX_DiscardUnknown()

func (*Transcript_Exon) XXX_Marshal 

func (m *Transcript_Exon) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*Transcript_Exon) XXX_Merge 

func (m *Transcript_Exon) XXX_Merge(src proto.Message)

func (*Transcript_Exon) XXX_Size 

func (m *Transcript_Exon) XXX_Size() int

func (*Transcript_Exon) XXX_Unmarshal 

func (m *Transcript_Exon) XXX_Unmarshal(b []byte) error

type UndeleteDatasetRequest 

type UndeleteDatasetRequest struct {
	// The ID of the dataset to be undeleted.
	DatasetId            string   `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*UndeleteDatasetRequest) Descriptor 

func (*UndeleteDatasetRequest) Descriptor() ([]byte, []int)

func (*UndeleteDatasetRequest) GetDatasetId 

func (m *UndeleteDatasetRequest) GetDatasetId() string

func (*UndeleteDatasetRequest) ProtoMessage 

func (*UndeleteDatasetRequest) ProtoMessage()

func (*UndeleteDatasetRequest) Reset 

func (m *UndeleteDatasetRequest) Reset()

func (*UndeleteDatasetRequest) String 

func (m *UndeleteDatasetRequest) String() string

func (*UndeleteDatasetRequest) XXX_DiscardUnknown 

func (m *UndeleteDatasetRequest) XXX_DiscardUnknown()

func (*UndeleteDatasetRequest) XXX_Marshal 

func (m *UndeleteDatasetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*UndeleteDatasetRequest) XXX_Merge 

func (m *UndeleteDatasetRequest) XXX_Merge(src proto.Message)

func (*UndeleteDatasetRequest) XXX_Size 

func (m *UndeleteDatasetRequest) XXX_Size() int

func (*UndeleteDatasetRequest) XXX_Unmarshal 

func (m *UndeleteDatasetRequest) XXX_Unmarshal(b []byte) error

type UpdateAnnotationRequest 

type UpdateAnnotationRequest struct {
	// The ID of the annotation to be updated.
	AnnotationId string `protobuf:"bytes,1,opt,name=annotation_id,json=annotationId,proto3" json:"annotation_id,omitempty"`
	// The new annotation.
	Annotation *Annotation `protobuf:"bytes,2,opt,name=annotation,proto3" json:"annotation,omitempty"`
	// An optional mask specifying which fields to update. Mutable fields are
	// [name][google.genomics.v1.Annotation.name],
	// [variant][google.genomics.v1.Annotation.variant],
	// [transcript][google.genomics.v1.Annotation.transcript], and
	// [info][google.genomics.v1.Annotation.info]. If unspecified, all mutable
	// fields will be updated.
	UpdateMask           *field_mask.FieldMask `protobuf:"bytes,3,opt,name=update_mask,json=updateMask,proto3" json:"update_mask,omitempty"`
	XXX_NoUnkeyedLiteral struct{}              `json:"-"`
	XXX_unrecognized     []byte                `json:"-"`
	XXX_sizecache        int32                 `json:"-"`
}

func (*UpdateAnnotationRequest) Descriptor 

func (*UpdateAnnotationRequest) Descriptor() ([]byte, []int)

func (*UpdateAnnotationRequest) GetAnnotation 

func (m *UpdateAnnotationRequest) GetAnnotation() *Annotation

func (*UpdateAnnotationRequest) GetAnnotationId 

func (m *UpdateAnnotationRequest) GetAnnotationId() string

func (*UpdateAnnotationRequest) GetUpdateMask 

func (m *UpdateAnnotationRequest) GetUpdateMask() *field_mask.FieldMask

func (*UpdateAnnotationRequest) ProtoMessage 

func (*UpdateAnnotationRequest) ProtoMessage()

func (*UpdateAnnotationRequest) Reset 

func (m *UpdateAnnotationRequest) Reset()

func (*UpdateAnnotationRequest) String 

func (m *UpdateAnnotationRequest) String() string

func (*UpdateAnnotationRequest) XXX_DiscardUnknown 

func (m *UpdateAnnotationRequest) XXX_DiscardUnknown()

func (*UpdateAnnotationRequest) XXX_Marshal 

func (m *UpdateAnnotationRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*UpdateAnnotationRequest) XXX_Merge 

func (m *UpdateAnnotationRequest) XXX_Merge(src proto.Message)

func (*UpdateAnnotationRequest) XXX_Size 

func (m *UpdateAnnotationRequest) XXX_Size() int

func (*UpdateAnnotationRequest) XXX_Unmarshal 

func (m *UpdateAnnotationRequest) XXX_Unmarshal(b []byte) error

type UpdateAnnotationSetRequest 

type UpdateAnnotationSetRequest struct {
	// The ID of the annotation set to be updated.
	AnnotationSetId string `protobuf:"bytes,1,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
	// The new annotation set.
	AnnotationSet *AnnotationSet `protobuf:"bytes,2,opt,name=annotation_set,json=annotationSet,proto3" json:"annotation_set,omitempty"`
	// An optional mask specifying which fields to update. Mutable fields are
	// [name][google.genomics.v1.AnnotationSet.name],
	// [source_uri][google.genomics.v1.AnnotationSet.source_uri], and
	// [info][google.genomics.v1.AnnotationSet.info]. If unspecified, all
	// mutable fields will be updated.
	UpdateMask           *field_mask.FieldMask `protobuf:"bytes,3,opt,name=update_mask,json=updateMask,proto3" json:"update_mask,omitempty"`
	XXX_NoUnkeyedLiteral struct{}              `json:"-"`
	XXX_unrecognized     []byte                `json:"-"`
	XXX_sizecache        int32                 `json:"-"`
}

func (*UpdateAnnotationSetRequest) Descriptor 

func (*UpdateAnnotationSetRequest) Descriptor() ([]byte, []int)

func (*UpdateAnnotationSetRequest) GetAnnotationSet 

func (m *UpdateAnnotationSetRequest) GetAnnotationSet() *AnnotationSet

func (*UpdateAnnotationSetRequest) GetAnnotationSetId 

func (m *UpdateAnnotationSetRequest) GetAnnotationSetId() string

func (*UpdateAnnotationSetRequest) GetUpdateMask 

func (m *UpdateAnnotationSetRequest) GetUpdateMask() *field_mask.FieldMask

func (*UpdateAnnotationSetRequest) ProtoMessage 

func (*UpdateAnnotationSetRequest) ProtoMessage()

func (*UpdateAnnotationSetRequest) Reset 

func (m *UpdateAnnotationSetRequest) Reset()

func (*UpdateAnnotationSetRequest) String 

func (m *UpdateAnnotationSetRequest) String() string

func (*UpdateAnnotationSetRequest) XXX_DiscardUnknown 

func (m *UpdateAnnotationSetRequest) XXX_DiscardUnknown()

func (*UpdateAnnotationSetRequest) XXX_Marshal 

func (m *UpdateAnnotationSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*UpdateAnnotationSetRequest) XXX_Merge 

func (m *UpdateAnnotationSetRequest) XXX_Merge(src proto.Message)

func (*UpdateAnnotationSetRequest) XXX_Size 

func (m *UpdateAnnotationSetRequest) XXX_Size() int

func (*UpdateAnnotationSetRequest) XXX_Unmarshal 

func (m *UpdateAnnotationSetRequest) XXX_Unmarshal(b []byte) error

type UpdateCallSetRequest 

type UpdateCallSetRequest struct {
	// The ID of the call set to be updated.
	CallSetId string `protobuf:"bytes,1,opt,name=call_set_id,json=callSetId,proto3" json:"call_set_id,omitempty"`
	// The new call set data.
	CallSet *CallSet `protobuf:"bytes,2,opt,name=call_set,json=callSet,proto3" json:"call_set,omitempty"`
	// An optional mask specifying which fields to update. At this time, the only
	// mutable field is [name][google.genomics.v1.CallSet.name]. The only
	// acceptable value is "name". If unspecified, all mutable fields will be
	// updated.
	UpdateMask           *field_mask.FieldMask `protobuf:"bytes,3,opt,name=update_mask,json=updateMask,proto3" json:"update_mask,omitempty"`
	XXX_NoUnkeyedLiteral struct{}              `json:"-"`
	XXX_unrecognized     []byte                `json:"-"`
	XXX_sizecache        int32                 `json:"-"`
}

func (*UpdateCallSetRequest) Descriptor 

func (*UpdateCallSetRequest) Descriptor() ([]byte, []int)

func (*UpdateCallSetRequest) GetCallSet 

func (m *UpdateCallSetRequest) GetCallSet() *CallSet

func (*UpdateCallSetRequest) GetCallSetId 

func (m *UpdateCallSetRequest) GetCallSetId() string

func (*UpdateCallSetRequest) GetUpdateMask 

func (m *UpdateCallSetRequest) GetUpdateMask() *field_mask.FieldMask

func (*UpdateCallSetRequest) ProtoMessage 

func (*UpdateCallSetRequest) ProtoMessage()

func (*UpdateCallSetRequest) Reset 

func (m *UpdateCallSetRequest) Reset()

func (*UpdateCallSetRequest) String 

func (m *UpdateCallSetRequest) String() string

func (*UpdateCallSetRequest) XXX_DiscardUnknown 

func (m *UpdateCallSetRequest) XXX_DiscardUnknown()

func (*UpdateCallSetRequest) XXX_Marshal 

func (m *UpdateCallSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*UpdateCallSetRequest) XXX_Merge 

func (m *UpdateCallSetRequest) XXX_Merge(src proto.Message)

func (*UpdateCallSetRequest) XXX_Size 

func (m *UpdateCallSetRequest) XXX_Size() int

func (*UpdateCallSetRequest) XXX_Unmarshal 

func (m *UpdateCallSetRequest) XXX_Unmarshal(b []byte) error

type UpdateDatasetRequest 

type UpdateDatasetRequest struct {
	// The ID of the dataset to be updated.
	DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
	// The new dataset data.
	Dataset *Dataset `protobuf:"bytes,2,opt,name=dataset,proto3" json:"dataset,omitempty"`
	// An optional mask specifying which fields to update. At this time, the only
	// mutable field is [name][google.genomics.v1.Dataset.name]. The only
	// acceptable value is "name". If unspecified, all mutable fields will be
	// updated.
	UpdateMask           *field_mask.FieldMask `protobuf:"bytes,3,opt,name=update_mask,json=updateMask,proto3" json:"update_mask,omitempty"`
	XXX_NoUnkeyedLiteral struct{}              `json:"-"`
	XXX_unrecognized     []byte                `json:"-"`
	XXX_sizecache        int32                 `json:"-"`
}

func (*UpdateDatasetRequest) Descriptor 

func (*UpdateDatasetRequest) Descriptor() ([]byte, []int)

func (*UpdateDatasetRequest) GetDataset 

func (m *UpdateDatasetRequest) GetDataset() *Dataset

func (*UpdateDatasetRequest) GetDatasetId 

func (m *UpdateDatasetRequest) GetDatasetId() string

func (*UpdateDatasetRequest) GetUpdateMask 

func (m *UpdateDatasetRequest) GetUpdateMask() *field_mask.FieldMask

func (*UpdateDatasetRequest) ProtoMessage 

func (*UpdateDatasetRequest) ProtoMessage()

func (*UpdateDatasetRequest) Reset 

func (m *UpdateDatasetRequest) Reset()

func (*UpdateDatasetRequest) String 

func (m *UpdateDatasetRequest) String() string

func (*UpdateDatasetRequest) XXX_DiscardUnknown 

func (m *UpdateDatasetRequest) XXX_DiscardUnknown()

func (*UpdateDatasetRequest) XXX_Marshal 

func (m *UpdateDatasetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*UpdateDatasetRequest) XXX_Merge 

func (m *UpdateDatasetRequest) XXX_Merge(src proto.Message)

func (*UpdateDatasetRequest) XXX_Size 

func (m *UpdateDatasetRequest) XXX_Size() int

func (*UpdateDatasetRequest) XXX_Unmarshal 

func (m *UpdateDatasetRequest) XXX_Unmarshal(b []byte) error

type UpdateReadGroupSetRequest 

type UpdateReadGroupSetRequest struct {
	// The ID of the read group set to be updated. The caller must have WRITE
	// permissions to the dataset associated with this read group set.
	ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
	// The new read group set data. See `updateMask` for details on mutability of
	// fields.
	ReadGroupSet *ReadGroupSet `protobuf:"bytes,2,opt,name=read_group_set,json=readGroupSet,proto3" json:"read_group_set,omitempty"`
	// An optional mask specifying which fields to update. Supported fields:
	//
	// * [name][google.genomics.v1.ReadGroupSet.name].
	// * [referenceSetId][google.genomics.v1.ReadGroupSet.reference_set_id].
	//
	// Leaving `updateMask` unset is equivalent to specifying all mutable
	// fields.
	UpdateMask           *field_mask.FieldMask `protobuf:"bytes,3,opt,name=update_mask,json=updateMask,proto3" json:"update_mask,omitempty"`
	XXX_NoUnkeyedLiteral struct{}              `json:"-"`
	XXX_unrecognized     []byte                `json:"-"`
	XXX_sizecache        int32                 `json:"-"`
}

func (*UpdateReadGroupSetRequest) Descriptor 

func (*UpdateReadGroupSetRequest) Descriptor() ([]byte, []int)

func (*UpdateReadGroupSetRequest) GetReadGroupSet 

func (m *UpdateReadGroupSetRequest) GetReadGroupSet() *ReadGroupSet

func (*UpdateReadGroupSetRequest) GetReadGroupSetId 

func (m *UpdateReadGroupSetRequest) GetReadGroupSetId() string

func (*UpdateReadGroupSetRequest) GetUpdateMask 

func (m *UpdateReadGroupSetRequest) GetUpdateMask() *field_mask.FieldMask

func (*UpdateReadGroupSetRequest) ProtoMessage 

func (*UpdateReadGroupSetRequest) ProtoMessage()

func (*UpdateReadGroupSetRequest) Reset 

func (m *UpdateReadGroupSetRequest) Reset()

func (*UpdateReadGroupSetRequest) String 

func (m *UpdateReadGroupSetRequest) String() string

func (*UpdateReadGroupSetRequest) XXX_DiscardUnknown 

func (m *UpdateReadGroupSetRequest) XXX_DiscardUnknown()

func (*UpdateReadGroupSetRequest) XXX_Marshal 

func (m *UpdateReadGroupSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*UpdateReadGroupSetRequest) XXX_Merge 

func (m *UpdateReadGroupSetRequest) XXX_Merge(src proto.Message)

func (*UpdateReadGroupSetRequest) XXX_Size 

func (m *UpdateReadGroupSetRequest) XXX_Size() int

func (*UpdateReadGroupSetRequest) XXX_Unmarshal 

func (m *UpdateReadGroupSetRequest) XXX_Unmarshal(b []byte) error

type UpdateVariantRequest 

type UpdateVariantRequest struct {
	// The ID of the variant to be updated.
	VariantId string `protobuf:"bytes,1,opt,name=variant_id,json=variantId,proto3" json:"variant_id,omitempty"`
	// The new variant data.
	Variant *Variant `protobuf:"bytes,2,opt,name=variant,proto3" json:"variant,omitempty"`
	// An optional mask specifying which fields to update. At this time, mutable
	// fields are [names][google.genomics.v1.Variant.names] and
	// [info][google.genomics.v1.Variant.info]. Acceptable values are "names" and
	// "info". If unspecified, all mutable fields will be updated.
	UpdateMask           *field_mask.FieldMask `protobuf:"bytes,3,opt,name=update_mask,json=updateMask,proto3" json:"update_mask,omitempty"`
	XXX_NoUnkeyedLiteral struct{}              `json:"-"`
	XXX_unrecognized     []byte                `json:"-"`
	XXX_sizecache        int32                 `json:"-"`
}

func (*UpdateVariantRequest) Descriptor 

func (*UpdateVariantRequest) Descriptor() ([]byte, []int)

func (*UpdateVariantRequest) GetUpdateMask 

func (m *UpdateVariantRequest) GetUpdateMask() *field_mask.FieldMask

func (*UpdateVariantRequest) GetVariant 

func (m *UpdateVariantRequest) GetVariant() *Variant

func (*UpdateVariantRequest) GetVariantId 

func (m *UpdateVariantRequest) GetVariantId() string

func (*UpdateVariantRequest) ProtoMessage 

func (*UpdateVariantRequest) ProtoMessage()

func (*UpdateVariantRequest) Reset 

func (m *UpdateVariantRequest) Reset()

func (*UpdateVariantRequest) String 

func (m *UpdateVariantRequest) String() string

func (*UpdateVariantRequest) XXX_DiscardUnknown 

func (m *UpdateVariantRequest) XXX_DiscardUnknown()

func (*UpdateVariantRequest) XXX_Marshal 

func (m *UpdateVariantRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*UpdateVariantRequest) XXX_Merge 

func (m *UpdateVariantRequest) XXX_Merge(src proto.Message)

func (*UpdateVariantRequest) XXX_Size 

func (m *UpdateVariantRequest) XXX_Size() int

func (*UpdateVariantRequest) XXX_Unmarshal 

func (m *UpdateVariantRequest) XXX_Unmarshal(b []byte) error

type UpdateVariantSetRequest 

type UpdateVariantSetRequest struct {
	// The ID of the variant to be updated (must already exist).
	VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
	// The new variant data. Only the variant_set.metadata will be considered
	// for update.
	VariantSet *VariantSet `protobuf:"bytes,2,opt,name=variant_set,json=variantSet,proto3" json:"variant_set,omitempty"`
	// An optional mask specifying which fields to update. Supported fields:
	//
	// * [metadata][google.genomics.v1.VariantSet.metadata].
	// * [name][google.genomics.v1.VariantSet.name].
	// * [description][google.genomics.v1.VariantSet.description].
	//
	// Leaving `updateMask` unset is equivalent to specifying all mutable
	// fields.
	UpdateMask           *field_mask.FieldMask `protobuf:"bytes,5,opt,name=update_mask,json=updateMask,proto3" json:"update_mask,omitempty"`
	XXX_NoUnkeyedLiteral struct{}              `json:"-"`
	XXX_unrecognized     []byte                `json:"-"`
	XXX_sizecache        int32                 `json:"-"`
}

func (*UpdateVariantSetRequest) Descriptor 

func (*UpdateVariantSetRequest) Descriptor() ([]byte, []int)

func (*UpdateVariantSetRequest) GetUpdateMask 

func (m *UpdateVariantSetRequest) GetUpdateMask() *field_mask.FieldMask

func (*UpdateVariantSetRequest) GetVariantSet 

func (m *UpdateVariantSetRequest) GetVariantSet() *VariantSet

func (*UpdateVariantSetRequest) GetVariantSetId 

func (m *UpdateVariantSetRequest) GetVariantSetId() string

func (*UpdateVariantSetRequest) ProtoMessage 

func (*UpdateVariantSetRequest) ProtoMessage()

func (*UpdateVariantSetRequest) Reset 

func (m *UpdateVariantSetRequest) Reset()

func (*UpdateVariantSetRequest) String 

func (m *UpdateVariantSetRequest) String() string

func (*UpdateVariantSetRequest) XXX_DiscardUnknown 

func (m *UpdateVariantSetRequest) XXX_DiscardUnknown()

func (*UpdateVariantSetRequest) XXX_Marshal 

func (m *UpdateVariantSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*UpdateVariantSetRequest) XXX_Merge 

func (m *UpdateVariantSetRequest) XXX_Merge(src proto.Message)

func (*UpdateVariantSetRequest) XXX_Size 

func (m *UpdateVariantSetRequest) XXX_Size() int

func (*UpdateVariantSetRequest) XXX_Unmarshal 

func (m *UpdateVariantSetRequest) XXX_Unmarshal(b []byte) error

type Variant 

type Variant struct {
	// The ID of the variant set this variant belongs to.
	VariantSetId string `protobuf:"bytes,15,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
	// The server-generated variant ID, unique across all variants.
	Id string `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
	// Names for the variant, for example a RefSNP ID.
	Names []string `protobuf:"bytes,3,rep,name=names,proto3" json:"names,omitempty"`
	// The date this variant was created, in milliseconds from the epoch.
	Created int64 `protobuf:"varint,12,opt,name=created,proto3" json:"created,omitempty"`
	// The reference on which this variant occurs.
	// (such as `chr20` or `X`)
	ReferenceName string `protobuf:"bytes,14,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
	// The position at which this variant occurs (0-based).
	// This corresponds to the first base of the string of reference bases.
	Start int64 `protobuf:"varint,16,opt,name=start,proto3" json:"start,omitempty"`
	// The end position (0-based) of this variant. This corresponds to the first
	// base after the last base in the reference allele. So, the length of
	// the reference allele is (end - start). This is useful for variants
	// that don't explicitly give alternate bases, for example large deletions.
	End int64 `protobuf:"varint,13,opt,name=end,proto3" json:"end,omitempty"`
	// The reference bases for this variant. They start at the given
	// position.
	ReferenceBases string `protobuf:"bytes,6,opt,name=reference_bases,json=referenceBases,proto3" json:"reference_bases,omitempty"`
	// The bases that appear instead of the reference bases.
	AlternateBases []string `protobuf:"bytes,7,rep,name=alternate_bases,json=alternateBases,proto3" json:"alternate_bases,omitempty"`
	// A measure of how likely this variant is to be real.
	// A higher value is better.
	Quality float64 `protobuf:"fixed64,8,opt,name=quality,proto3" json:"quality,omitempty"`
	// A list of filters (normally quality filters) this variant has failed.
	// `PASS` indicates this variant has passed all filters.
	Filter []string `protobuf:"bytes,9,rep,name=filter,proto3" json:"filter,omitempty"`
	// A map of additional variant information. This must be of the form
	// map<string, string[]> (string key mapping to a list of string values).
	Info map[string]*_struct.ListValue `` /* 150-byte string literal not displayed */
	// The variant calls for this particular variant. Each one represents the
	// determination of genotype with respect to this variant.
	Calls                []*VariantCall `protobuf:"bytes,11,rep,name=calls,proto3" json:"calls,omitempty"`
	XXX_NoUnkeyedLiteral struct{}       `json:"-"`
	XXX_unrecognized     []byte         `json:"-"`
	XXX_sizecache        int32          `json:"-"`
}

A variant represents a change in DNA sequence relative to a reference sequence. For example, a variant could represent a SNP or an insertion. Variants belong to a variant set.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

Each of the calls on a variant represent a determination of genotype with respect to that variant. For example, a call might assign probability of 0.32 to the occurrence of a SNP named rs1234 in a sample named NA12345. A call belongs to a call set, which contains related calls typically from one sample.

func (*Variant) Descriptor 

func (*Variant) Descriptor() ([]byte, []int)

func (*Variant) GetAlternateBases 

func (m *Variant) GetAlternateBases() []string

func (*Variant) GetCalls 

func (m *Variant) GetCalls() []*VariantCall

func (*Variant) GetCreated 

func (m *Variant) GetCreated() int64

func (*Variant) GetEnd 

func (m *Variant) GetEnd() int64

func (*Variant) GetFilter 

func (m *Variant) GetFilter() []string

func (*Variant) GetId 

func (m *Variant) GetId() string

func (*Variant) GetInfo 

func (m *Variant) GetInfo() map[string]*_struct.ListValue

func (*Variant) GetNames 

func (m *Variant) GetNames() []string

func (*Variant) GetQuality 

func (m *Variant) GetQuality() float64

func (*Variant) GetReferenceBases 

func (m *Variant) GetReferenceBases() string

func (*Variant) GetReferenceName 

func (m *Variant) GetReferenceName() string

func (*Variant) GetStart 

func (m *Variant) GetStart() int64

func (*Variant) GetVariantSetId 

func (m *Variant) GetVariantSetId() string

func (*Variant) ProtoMessage 

func (*Variant) ProtoMessage()

func (*Variant) Reset 

func (m *Variant) Reset()

func (*Variant) String 

func (m *Variant) String() string

func (*Variant) XXX_DiscardUnknown 

func (m *Variant) XXX_DiscardUnknown()

func (*Variant) XXX_Marshal 

func (m *Variant) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*Variant) XXX_Merge 

func (m *Variant) XXX_Merge(src proto.Message)

func (*Variant) XXX_Size 

func (m *Variant) XXX_Size() int

func (*Variant) XXX_Unmarshal 

func (m *Variant) XXX_Unmarshal(b []byte) error

type VariantAnnotation 

type VariantAnnotation struct {
	// Type has been adapted from ClinVar's list of variant types.
	Type VariantAnnotation_Type `protobuf:"varint,1,opt,name=type,proto3,enum=google.genomics.v1.VariantAnnotation_Type" json:"type,omitempty"`
	// Effect of the variant on the coding sequence.
	Effect VariantAnnotation_Effect `protobuf:"varint,2,opt,name=effect,proto3,enum=google.genomics.v1.VariantAnnotation_Effect" json:"effect,omitempty"`
	// The alternate allele for this variant. If multiple alternate alleles
	// exist at this location, create a separate variant for each one, as they
	// may represent distinct conditions.
	AlternateBases string `protobuf:"bytes,3,opt,name=alternate_bases,json=alternateBases,proto3" json:"alternate_bases,omitempty"`
	// Google annotation ID of the gene affected by this variant. This should
	// be provided when the variant is created.
	GeneId string `protobuf:"bytes,4,opt,name=gene_id,json=geneId,proto3" json:"gene_id,omitempty"`
	// Google annotation IDs of the transcripts affected by this variant. These
	// should be provided when the variant is created.
	TranscriptIds []string `protobuf:"bytes,5,rep,name=transcript_ids,json=transcriptIds,proto3" json:"transcript_ids,omitempty"`
	// The set of conditions associated with this variant.
	// A condition describes the way a variant influences human health.
	Conditions []*VariantAnnotation_ClinicalCondition `protobuf:"bytes,6,rep,name=conditions,proto3" json:"conditions,omitempty"`
	// Describes the clinical significance of a variant.
	// It is adapted from the ClinVar controlled vocabulary for clinical
	// significance described at:
	// http://www.ncbi.nlm.nih.gov/clinvar/docs/clinsig/
	ClinicalSignificance VariantAnnotation_ClinicalSignificance `` /* 185-byte string literal not displayed */
	XXX_NoUnkeyedLiteral struct{}                               `json:"-"`
	XXX_unrecognized     []byte                                 `json:"-"`
	XXX_sizecache        int32                                  `json:"-"`
}

func (*VariantAnnotation) Descriptor 

func (*VariantAnnotation) Descriptor() ([]byte, []int)

func (*VariantAnnotation) GetAlternateBases 

func (m *VariantAnnotation) GetAlternateBases() string

func (*VariantAnnotation) GetClinicalSignificance 

func (m *VariantAnnotation) GetClinicalSignificance() VariantAnnotation_ClinicalSignificance

func (*VariantAnnotation) GetConditions 

func (m *VariantAnnotation) GetConditions() []*VariantAnnotation_ClinicalCondition

func (*VariantAnnotation) GetEffect 

func (m *VariantAnnotation) GetEffect() VariantAnnotation_Effect

func (*VariantAnnotation) GetGeneId 

func (m *VariantAnnotation) GetGeneId() string

func (*VariantAnnotation) GetTranscriptIds 

func (m *VariantAnnotation) GetTranscriptIds() []string

func (*VariantAnnotation) GetType 

func (m *VariantAnnotation) GetType() VariantAnnotation_Type

func (*VariantAnnotation) ProtoMessage 

func (*VariantAnnotation) ProtoMessage()

func (*VariantAnnotation) Reset 

func (m *VariantAnnotation) Reset()

func (*VariantAnnotation) String 

func (m *VariantAnnotation) String() string

func (*VariantAnnotation) XXX_DiscardUnknown 

func (m *VariantAnnotation) XXX_DiscardUnknown()

func (*VariantAnnotation) XXX_Marshal 

func (m *VariantAnnotation) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*VariantAnnotation) XXX_Merge 

func (m *VariantAnnotation) XXX_Merge(src proto.Message)

func (*VariantAnnotation) XXX_Size 

func (m *VariantAnnotation) XXX_Size() int

func (*VariantAnnotation) XXX_Unmarshal 

func (m *VariantAnnotation) XXX_Unmarshal(b []byte) error

type VariantAnnotation_ClinicalCondition 

type VariantAnnotation_ClinicalCondition struct {
	// A set of names for the condition.
	Names []string `protobuf:"bytes,1,rep,name=names,proto3" json:"names,omitempty"`
	// The set of external IDs for this condition.
	ExternalIds []*ExternalId `protobuf:"bytes,2,rep,name=external_ids,json=externalIds,proto3" json:"external_ids,omitempty"`
	// The MedGen concept id associated with this gene.
	// Search for these IDs at http://www.ncbi.nlm.nih.gov/medgen/
	ConceptId string `protobuf:"bytes,3,opt,name=concept_id,json=conceptId,proto3" json:"concept_id,omitempty"`
	// The OMIM id for this condition.
	// Search for these IDs at http://omim.org/
	OmimId               string   `protobuf:"bytes,4,opt,name=omim_id,json=omimId,proto3" json:"omim_id,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

func (*VariantAnnotation_ClinicalCondition) Descriptor 

func (*VariantAnnotation_ClinicalCondition) Descriptor() ([]byte, []int)

func (*VariantAnnotation_ClinicalCondition) GetConceptId 

func (m *VariantAnnotation_ClinicalCondition) GetConceptId() string

func (*VariantAnnotation_ClinicalCondition) GetExternalIds 

func (m *VariantAnnotation_ClinicalCondition) GetExternalIds() []*ExternalId

func (*VariantAnnotation_ClinicalCondition) GetNames 

func (m *VariantAnnotation_ClinicalCondition) GetNames() []string

func (*VariantAnnotation_ClinicalCondition) GetOmimId 

func (m *VariantAnnotation_ClinicalCondition) GetOmimId() string

func (*VariantAnnotation_ClinicalCondition) ProtoMessage 

func (*VariantAnnotation_ClinicalCondition) ProtoMessage()

func (*VariantAnnotation_ClinicalCondition) Reset 

func (m *VariantAnnotation_ClinicalCondition) Reset()

func (*VariantAnnotation_ClinicalCondition) String 

func (m *VariantAnnotation_ClinicalCondition) String() string

func (*VariantAnnotation_ClinicalCondition) XXX_DiscardUnknown 

func (m *VariantAnnotation_ClinicalCondition) XXX_DiscardUnknown()

func (*VariantAnnotation_ClinicalCondition) XXX_Marshal 

func (m *VariantAnnotation_ClinicalCondition) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*VariantAnnotation_ClinicalCondition) XXX_Merge 

func (m *VariantAnnotation_ClinicalCondition) XXX_Merge(src proto.Message)

func (*VariantAnnotation_ClinicalCondition) XXX_Size 

func (m *VariantAnnotation_ClinicalCondition) XXX_Size() int

func (*VariantAnnotation_ClinicalCondition) XXX_Unmarshal 

func (m *VariantAnnotation_ClinicalCondition) XXX_Unmarshal(b []byte) error

type VariantAnnotation_ClinicalSignificance 

type VariantAnnotation_ClinicalSignificance int32
const (
	VariantAnnotation_CLINICAL_SIGNIFICANCE_UNSPECIFIED VariantAnnotation_ClinicalSignificance = 0
	// `OTHER` should be used when no other clinical significance
	// value will suffice.
	VariantAnnotation_CLINICAL_SIGNIFICANCE_OTHER VariantAnnotation_ClinicalSignificance = 1
	VariantAnnotation_UNCERTAIN                   VariantAnnotation_ClinicalSignificance = 2
	VariantAnnotation_BENIGN                      VariantAnnotation_ClinicalSignificance = 3
	VariantAnnotation_LIKELY_BENIGN               VariantAnnotation_ClinicalSignificance = 4
	VariantAnnotation_LIKELY_PATHOGENIC           VariantAnnotation_ClinicalSignificance = 5
	VariantAnnotation_PATHOGENIC                  VariantAnnotation_ClinicalSignificance = 6
	VariantAnnotation_DRUG_RESPONSE               VariantAnnotation_ClinicalSignificance = 7
	VariantAnnotation_HISTOCOMPATIBILITY          VariantAnnotation_ClinicalSignificance = 8
	VariantAnnotation_CONFERS_SENSITIVITY         VariantAnnotation_ClinicalSignificance = 9
	VariantAnnotation_RISK_FACTOR                 VariantAnnotation_ClinicalSignificance = 10
	VariantAnnotation_ASSOCIATION                 VariantAnnotation_ClinicalSignificance = 11
	VariantAnnotation_PROTECTIVE                  VariantAnnotation_ClinicalSignificance = 12
	// `MULTIPLE_REPORTED` should be used when multiple clinical
	// signficances are reported for a variant. The original clinical
	// significance values may be provided in the `info` field.
	VariantAnnotation_MULTIPLE_REPORTED VariantAnnotation_ClinicalSignificance = 13
)

func (VariantAnnotation_ClinicalSignificance) EnumDescriptor 

func (VariantAnnotation_ClinicalSignificance) EnumDescriptor() ([]byte, []int)

func (VariantAnnotation_ClinicalSignificance) String 

func (x VariantAnnotation_ClinicalSignificance) String() string

type VariantAnnotation_Effect 

type VariantAnnotation_Effect int32
const (
	VariantAnnotation_EFFECT_UNSPECIFIED VariantAnnotation_Effect = 0
	// `EFFECT_OTHER` should be used when no other Effect
	// will suffice.
	VariantAnnotation_EFFECT_OTHER VariantAnnotation_Effect = 1
	// `FRAMESHIFT` indicates a mutation in which the insertion or
	// deletion of nucleotides resulted in a frameshift change.
	VariantAnnotation_FRAMESHIFT VariantAnnotation_Effect = 2
	// `FRAME_PRESERVING_INDEL` indicates a mutation in which a
	// multiple of three nucleotides has been inserted or deleted, resulting
	// in no change to the reading frame of the coding sequence.
	VariantAnnotation_FRAME_PRESERVING_INDEL VariantAnnotation_Effect = 3
	// `SYNONYMOUS_SNP` indicates a single nucleotide polymorphism
	// mutation that results in no amino acid change.
	VariantAnnotation_SYNONYMOUS_SNP VariantAnnotation_Effect = 4
	// `NONSYNONYMOUS_SNP` indicates a single nucleotide
	// polymorphism mutation that results in an amino acid change.
	VariantAnnotation_NONSYNONYMOUS_SNP VariantAnnotation_Effect = 5
	// `STOP_GAIN` indicates a mutation that leads to the creation
	// of a stop codon at the variant site. Frameshift mutations creating
	// downstream stop codons do not count as `STOP_GAIN`.
	VariantAnnotation_STOP_GAIN VariantAnnotation_Effect = 6
	// `STOP_LOSS` indicates a mutation that eliminates a
	// stop codon at the variant site.
	VariantAnnotation_STOP_LOSS VariantAnnotation_Effect = 7
	// `SPLICE_SITE_DISRUPTION` indicates that this variant is
	// found in a splice site for the associated transcript, and alters the
	// normal splicing pattern.
	VariantAnnotation_SPLICE_SITE_DISRUPTION VariantAnnotation_Effect = 8
)

func (VariantAnnotation_Effect) EnumDescriptor 

func (VariantAnnotation_Effect) EnumDescriptor() ([]byte, []int)

func (VariantAnnotation_Effect) String 

func (x VariantAnnotation_Effect) String() string

type VariantAnnotation_Type 

type VariantAnnotation_Type int32
const (
	VariantAnnotation_TYPE_UNSPECIFIED VariantAnnotation_Type = 0
	// `TYPE_OTHER` should be used when no other Type will suffice.
	// Further explanation of the variant type may be included in the
	// [info][google.genomics.v1.Annotation.info] field.
	VariantAnnotation_TYPE_OTHER VariantAnnotation_Type = 1
	// `INSERTION` indicates an insertion.
	VariantAnnotation_INSERTION VariantAnnotation_Type = 2
	// `DELETION` indicates a deletion.
	VariantAnnotation_DELETION VariantAnnotation_Type = 3
	// `SUBSTITUTION` indicates a block substitution of
	// two or more nucleotides.
	VariantAnnotation_SUBSTITUTION VariantAnnotation_Type = 4
	// `SNP` indicates a single nucleotide polymorphism.
	VariantAnnotation_SNP VariantAnnotation_Type = 5
	// `STRUCTURAL` indicates a large structural variant,
	// including chromosomal fusions, inversions, etc.
	VariantAnnotation_STRUCTURAL VariantAnnotation_Type = 6
	// `CNV` indicates a variation in copy number.
	VariantAnnotation_CNV VariantAnnotation_Type = 7
)

func (VariantAnnotation_Type) EnumDescriptor 

func (VariantAnnotation_Type) EnumDescriptor() ([]byte, []int)

func (VariantAnnotation_Type) String 

func (x VariantAnnotation_Type) String() string

type VariantCall 

type VariantCall struct {
	// The ID of the call set this variant call belongs to.
	CallSetId string `protobuf:"bytes,8,opt,name=call_set_id,json=callSetId,proto3" json:"call_set_id,omitempty"`
	// The name of the call set this variant call belongs to.
	CallSetName string `protobuf:"bytes,9,opt,name=call_set_name,json=callSetName,proto3" json:"call_set_name,omitempty"`
	// The genotype of this variant call. Each value represents either the value
	// of the `referenceBases` field or a 1-based index into
	// `alternateBases`. If a variant had a `referenceBases`
	// value of `T` and an `alternateBases`
	// value of `["A", "C"]`, and the `genotype` was
	// `[2, 1]`, that would mean the call
	// represented the heterozygous value `CA` for this variant.
	// If the `genotype` was instead `[0, 1]`, the
	// represented value would be `TA`. Ordering of the
	// genotype values is important if the `phaseset` is present.
	// If a genotype is not called (that is, a `.` is present in the
	// GT string) -1 is returned.
	Genotype []int32 `protobuf:"varint,7,rep,packed,name=genotype,proto3" json:"genotype,omitempty"`
	// If this field is present, this variant call's genotype ordering implies
	// the phase of the bases and is consistent with any other variant calls in
	// the same reference sequence which have the same phaseset value.
	// When importing data from VCF, if the genotype data was phased but no
	// phase set was specified this field will be set to `*`.
	Phaseset string `protobuf:"bytes,5,opt,name=phaseset,proto3" json:"phaseset,omitempty"`
	// The genotype likelihoods for this variant call. Each array entry
	// represents how likely a specific genotype is for this call. The value
	// ordering is defined by the GL tag in the VCF spec.
	// If Phred-scaled genotype likelihood scores (PL) are available and
	// log10(P) genotype likelihood scores (GL) are not, PL scores are converted
	// to GL scores.  If both are available, PL scores are stored in `info`.
	GenotypeLikelihood []float64 `protobuf:"fixed64,6,rep,packed,name=genotype_likelihood,json=genotypeLikelihood,proto3" json:"genotype_likelihood,omitempty"`
	// A map of additional variant call information. This must be of the form
	// map<string, string[]> (string key mapping to a list of string values).
	Info                 map[string]*_struct.ListValue `` /* 149-byte string literal not displayed */
	XXX_NoUnkeyedLiteral struct{}                      `json:"-"`
	XXX_unrecognized     []byte                        `json:"-"`
	XXX_sizecache        int32                         `json:"-"`
}

A call represents the determination of genotype with respect to a particular variant. It may include associated information such as quality and phasing. For example, a call might assign a probability of 0.32 to the occurrence of a SNP named rs1234 in a call set with the name NA12345.

func (*VariantCall) Descriptor 

func (*VariantCall) Descriptor() ([]byte, []int)

func (*VariantCall) GetCallSetId 

func (m *VariantCall) GetCallSetId() string

func (*VariantCall) GetCallSetName 

func (m *VariantCall) GetCallSetName() string

func (*VariantCall) GetGenotype 

func (m *VariantCall) GetGenotype() []int32

func (*VariantCall) GetGenotypeLikelihood 

func (m *VariantCall) GetGenotypeLikelihood() []float64

func (*VariantCall) GetInfo 

func (m *VariantCall) GetInfo() map[string]*_struct.ListValue

func (*VariantCall) GetPhaseset 

func (m *VariantCall) GetPhaseset() string

func (*VariantCall) ProtoMessage 

func (*VariantCall) ProtoMessage()

func (*VariantCall) Reset 

func (m *VariantCall) Reset()

func (*VariantCall) String 

func (m *VariantCall) String() string

func (*VariantCall) XXX_DiscardUnknown 

func (m *VariantCall) XXX_DiscardUnknown()

func (*VariantCall) XXX_Marshal 

func (m *VariantCall) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*VariantCall) XXX_Merge 

func (m *VariantCall) XXX_Merge(src proto.Message)

func (*VariantCall) XXX_Size 

func (m *VariantCall) XXX_Size() int

func (*VariantCall) XXX_Unmarshal 

func (m *VariantCall) XXX_Unmarshal(b []byte) error

type VariantServiceV1Client 

type VariantServiceV1Client interface {
	// Creates variant data by asynchronously importing the provided information.
	//
	// For the definitions of variant sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// The variants for import will be merged with any existing variant that
	// matches its reference sequence, start, end, reference bases, and
	// alternative bases. If no such variant exists, a new one will be created.
	//
	// When variants are merged, the call information from the new variant
	// is added to the existing variant, and Variant info fields are merged
	// as specified in
	// [infoMergeConfig][google.genomics.v1.ImportVariantsRequest.info_merge_config].
	// As a special case, for single-sample VCF files, QUAL and FILTER fields will
	// be moved to the call level; these are sometimes interpreted in a
	// call-specific context.
	// Imported VCF headers are appended to the metadata already in a variant set.
	ImportVariants(ctx context.Context, in *ImportVariantsRequest, opts ...grpc.CallOption) (*longrunning.Operation, error)
	// Creates a new variant set.
	//
	// For the definitions of variant sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// The provided variant set must have a valid `datasetId` set - all other
	// fields are optional. Note that the `id` field will be ignored, as this is
	// assigned by the server.
	CreateVariantSet(ctx context.Context, in *CreateVariantSetRequest, opts ...grpc.CallOption) (*VariantSet, error)
	// Exports variant set data to an external destination.
	//
	// For the definitions of variant sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	ExportVariantSet(ctx context.Context, in *ExportVariantSetRequest, opts ...grpc.CallOption) (*longrunning.Operation, error)
	// Gets a variant set by ID.
	//
	// For the definitions of variant sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	GetVariantSet(ctx context.Context, in *GetVariantSetRequest, opts ...grpc.CallOption) (*VariantSet, error)
	// Returns a list of all variant sets matching search criteria.
	//
	// For the definitions of variant sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Implements
	// [GlobalAllianceApi.searchVariantSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L49).
	SearchVariantSets(ctx context.Context, in *SearchVariantSetsRequest, opts ...grpc.CallOption) (*SearchVariantSetsResponse, error)
	// Deletes a variant set including all variants, call sets, and calls within.
	// This is not reversible.
	//
	// For the definitions of variant sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	DeleteVariantSet(ctx context.Context, in *DeleteVariantSetRequest, opts ...grpc.CallOption) (*empty.Empty, error)
	// Updates a variant set using patch semantics.
	//
	// For the definitions of variant sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	UpdateVariantSet(ctx context.Context, in *UpdateVariantSetRequest, opts ...grpc.CallOption) (*VariantSet, error)
	// Gets a list of variants matching the criteria.
	//
	// For the definitions of variants and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Implements
	// [GlobalAllianceApi.searchVariants](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L126).
	SearchVariants(ctx context.Context, in *SearchVariantsRequest, opts ...grpc.CallOption) (*SearchVariantsResponse, error)
	// Creates a new variant.
	//
	// For the definitions of variants and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	CreateVariant(ctx context.Context, in *CreateVariantRequest, opts ...grpc.CallOption) (*Variant, error)
	// Updates a variant.
	//
	// For the definitions of variants and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// This method supports patch semantics. Returns the modified variant without
	// its calls.
	UpdateVariant(ctx context.Context, in *UpdateVariantRequest, opts ...grpc.CallOption) (*Variant, error)
	// Deletes a variant.
	//
	// For the definitions of variants and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	DeleteVariant(ctx context.Context, in *DeleteVariantRequest, opts ...grpc.CallOption) (*empty.Empty, error)
	// Gets a variant by ID.
	//
	// For the definitions of variants and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	GetVariant(ctx context.Context, in *GetVariantRequest, opts ...grpc.CallOption) (*Variant, error)
	// Merges the given variants with existing variants.
	//
	// For the definitions of variants and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Each variant will be
	// merged with an existing variant that matches its reference sequence,
	// start, end, reference bases, and alternative bases. If no such variant
	// exists, a new one will be created.
	//
	// When variants are merged, the call information from the new variant
	// is added to the existing variant. Variant info fields are merged as
	// specified in the
	// [infoMergeConfig][google.genomics.v1.MergeVariantsRequest.info_merge_config]
	// field of the MergeVariantsRequest.
	//
	// Please exercise caution when using this method!  It is easy to introduce
	// mistakes in existing variants and difficult to back out of them.  For
	// example,
	// suppose you were trying to merge a new variant with an existing one and
	// both
	// variants contain calls that belong to callsets with the same callset ID.
	//
	//     // Existing variant - irrelevant fields trimmed for clarity
	//     {
	//         "variantSetId": "10473108253681171589",
	//         "referenceName": "1",
	//         "start": "10582",
	//         "referenceBases": "G",
	//         "alternateBases": [
	//             "A"
	//         ],
	//         "calls": [
	//             {
	//                 "callSetId": "10473108253681171589-0",
	//                 "callSetName": "CALLSET0",
	//                 "genotype": [
	//                     0,
	//                     1
	//                 ],
	//             }
	//         ]
	//     }
	//
	//     // New variant with conflicting call information
	//     {
	//         "variantSetId": "10473108253681171589",
	//         "referenceName": "1",
	//         "start": "10582",
	//         "referenceBases": "G",
	//         "alternateBases": [
	//             "A"
	//         ],
	//         "calls": [
	//             {
	//                 "callSetId": "10473108253681171589-0",
	//                 "callSetName": "CALLSET0",
	//                 "genotype": [
	//                     1,
	//                     1
	//                 ],
	//             }
	//         ]
	//     }
	//
	// The resulting merged variant would overwrite the existing calls with those
	// from the new variant:
	//
	//     {
	//         "variantSetId": "10473108253681171589",
	//         "referenceName": "1",
	//         "start": "10582",
	//         "referenceBases": "G",
	//         "alternateBases": [
	//             "A"
	//         ],
	//         "calls": [
	//             {
	//                 "callSetId": "10473108253681171589-0",
	//                 "callSetName": "CALLSET0",
	//                 "genotype": [
	//                     1,
	//                     1
	//                 ],
	//             }
	//         ]
	//     }
	//
	// This may be the desired outcome, but it is up to the user to determine if
	// if that is indeed the case.
	MergeVariants(ctx context.Context, in *MergeVariantsRequest, opts ...grpc.CallOption) (*empty.Empty, error)
	// Gets a list of call sets matching the criteria.
	//
	// For the definitions of call sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Implements
	// [GlobalAllianceApi.searchCallSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L178).
	SearchCallSets(ctx context.Context, in *SearchCallSetsRequest, opts ...grpc.CallOption) (*SearchCallSetsResponse, error)
	// Creates a new call set.
	//
	// For the definitions of call sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	CreateCallSet(ctx context.Context, in *CreateCallSetRequest, opts ...grpc.CallOption) (*CallSet, error)
	// Updates a call set.
	//
	// For the definitions of call sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// This method supports patch semantics.
	UpdateCallSet(ctx context.Context, in *UpdateCallSetRequest, opts ...grpc.CallOption) (*CallSet, error)
	// Deletes a call set.
	//
	// For the definitions of call sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	DeleteCallSet(ctx context.Context, in *DeleteCallSetRequest, opts ...grpc.CallOption) (*empty.Empty, error)
	// Gets a call set by ID.
	//
	// For the definitions of call sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	GetCallSet(ctx context.Context, in *GetCallSetRequest, opts ...grpc.CallOption) (*CallSet, error)
}

VariantServiceV1Client is the client API for VariantServiceV1 service.

For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.

func NewVariantServiceV1Client 

func NewVariantServiceV1Client(cc *grpc.ClientConn) VariantServiceV1Client

type VariantServiceV1Server 

type VariantServiceV1Server interface {
	// Creates variant data by asynchronously importing the provided information.
	//
	// For the definitions of variant sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// The variants for import will be merged with any existing variant that
	// matches its reference sequence, start, end, reference bases, and
	// alternative bases. If no such variant exists, a new one will be created.
	//
	// When variants are merged, the call information from the new variant
	// is added to the existing variant, and Variant info fields are merged
	// as specified in
	// [infoMergeConfig][google.genomics.v1.ImportVariantsRequest.info_merge_config].
	// As a special case, for single-sample VCF files, QUAL and FILTER fields will
	// be moved to the call level; these are sometimes interpreted in a
	// call-specific context.
	// Imported VCF headers are appended to the metadata already in a variant set.
	ImportVariants(context.Context, *ImportVariantsRequest) (*longrunning.Operation, error)
	// Creates a new variant set.
	//
	// For the definitions of variant sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// The provided variant set must have a valid `datasetId` set - all other
	// fields are optional. Note that the `id` field will be ignored, as this is
	// assigned by the server.
	CreateVariantSet(context.Context, *CreateVariantSetRequest) (*VariantSet, error)
	// Exports variant set data to an external destination.
	//
	// For the definitions of variant sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	ExportVariantSet(context.Context, *ExportVariantSetRequest) (*longrunning.Operation, error)
	// Gets a variant set by ID.
	//
	// For the definitions of variant sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	GetVariantSet(context.Context, *GetVariantSetRequest) (*VariantSet, error)
	// Returns a list of all variant sets matching search criteria.
	//
	// For the definitions of variant sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Implements
	// [GlobalAllianceApi.searchVariantSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L49).
	SearchVariantSets(context.Context, *SearchVariantSetsRequest) (*SearchVariantSetsResponse, error)
	// Deletes a variant set including all variants, call sets, and calls within.
	// This is not reversible.
	//
	// For the definitions of variant sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	DeleteVariantSet(context.Context, *DeleteVariantSetRequest) (*empty.Empty, error)
	// Updates a variant set using patch semantics.
	//
	// For the definitions of variant sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	UpdateVariantSet(context.Context, *UpdateVariantSetRequest) (*VariantSet, error)
	// Gets a list of variants matching the criteria.
	//
	// For the definitions of variants and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Implements
	// [GlobalAllianceApi.searchVariants](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L126).
	SearchVariants(context.Context, *SearchVariantsRequest) (*SearchVariantsResponse, error)
	// Creates a new variant.
	//
	// For the definitions of variants and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	CreateVariant(context.Context, *CreateVariantRequest) (*Variant, error)
	// Updates a variant.
	//
	// For the definitions of variants and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// This method supports patch semantics. Returns the modified variant without
	// its calls.
	UpdateVariant(context.Context, *UpdateVariantRequest) (*Variant, error)
	// Deletes a variant.
	//
	// For the definitions of variants and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	DeleteVariant(context.Context, *DeleteVariantRequest) (*empty.Empty, error)
	// Gets a variant by ID.
	//
	// For the definitions of variants and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	GetVariant(context.Context, *GetVariantRequest) (*Variant, error)
	// Merges the given variants with existing variants.
	//
	// For the definitions of variants and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Each variant will be
	// merged with an existing variant that matches its reference sequence,
	// start, end, reference bases, and alternative bases. If no such variant
	// exists, a new one will be created.
	//
	// When variants are merged, the call information from the new variant
	// is added to the existing variant. Variant info fields are merged as
	// specified in the
	// [infoMergeConfig][google.genomics.v1.MergeVariantsRequest.info_merge_config]
	// field of the MergeVariantsRequest.
	//
	// Please exercise caution when using this method!  It is easy to introduce
	// mistakes in existing variants and difficult to back out of them.  For
	// example,
	// suppose you were trying to merge a new variant with an existing one and
	// both
	// variants contain calls that belong to callsets with the same callset ID.
	//
	//     // Existing variant - irrelevant fields trimmed for clarity
	//     {
	//         "variantSetId": "10473108253681171589",
	//         "referenceName": "1",
	//         "start": "10582",
	//         "referenceBases": "G",
	//         "alternateBases": [
	//             "A"
	//         ],
	//         "calls": [
	//             {
	//                 "callSetId": "10473108253681171589-0",
	//                 "callSetName": "CALLSET0",
	//                 "genotype": [
	//                     0,
	//                     1
	//                 ],
	//             }
	//         ]
	//     }
	//
	//     // New variant with conflicting call information
	//     {
	//         "variantSetId": "10473108253681171589",
	//         "referenceName": "1",
	//         "start": "10582",
	//         "referenceBases": "G",
	//         "alternateBases": [
	//             "A"
	//         ],
	//         "calls": [
	//             {
	//                 "callSetId": "10473108253681171589-0",
	//                 "callSetName": "CALLSET0",
	//                 "genotype": [
	//                     1,
	//                     1
	//                 ],
	//             }
	//         ]
	//     }
	//
	// The resulting merged variant would overwrite the existing calls with those
	// from the new variant:
	//
	//     {
	//         "variantSetId": "10473108253681171589",
	//         "referenceName": "1",
	//         "start": "10582",
	//         "referenceBases": "G",
	//         "alternateBases": [
	//             "A"
	//         ],
	//         "calls": [
	//             {
	//                 "callSetId": "10473108253681171589-0",
	//                 "callSetName": "CALLSET0",
	//                 "genotype": [
	//                     1,
	//                     1
	//                 ],
	//             }
	//         ]
	//     }
	//
	// This may be the desired outcome, but it is up to the user to determine if
	// if that is indeed the case.
	MergeVariants(context.Context, *MergeVariantsRequest) (*empty.Empty, error)
	// Gets a list of call sets matching the criteria.
	//
	// For the definitions of call sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// Implements
	// [GlobalAllianceApi.searchCallSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L178).
	SearchCallSets(context.Context, *SearchCallSetsRequest) (*SearchCallSetsResponse, error)
	// Creates a new call set.
	//
	// For the definitions of call sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	CreateCallSet(context.Context, *CreateCallSetRequest) (*CallSet, error)
	// Updates a call set.
	//
	// For the definitions of call sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// This method supports patch semantics.
	UpdateCallSet(context.Context, *UpdateCallSetRequest) (*CallSet, error)
	// Deletes a call set.
	//
	// For the definitions of call sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	DeleteCallSet(context.Context, *DeleteCallSetRequest) (*empty.Empty, error)
	// Gets a call set by ID.
	//
	// For the definitions of call sets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	GetCallSet(context.Context, *GetCallSetRequest) (*CallSet, error)
}

VariantServiceV1Server is the server API for VariantServiceV1 service.

type VariantSet 

type VariantSet struct {
	// The dataset to which this variant set belongs.
	DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
	// The server-generated variant set ID, unique across all variant sets.
	Id string `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
	// The reference set to which the variant set is mapped. The reference set
	// describes the alignment provenance of the variant set, while the
	// `referenceBounds` describe the shape of the actual variant data. The
	// reference set's reference names are a superset of those found in the
	// `referenceBounds`.
	//
	// For example, given a variant set that is mapped to the GRCh38 reference set
	// and contains a single variant on reference 'X', `referenceBounds` would
	// contain only an entry for 'X', while the associated reference set
	// enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
	ReferenceSetId string `protobuf:"bytes,6,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
	// A list of all references used by the variants in a variant set
	// with associated coordinate upper bounds for each one.
	ReferenceBounds []*ReferenceBound `protobuf:"bytes,5,rep,name=reference_bounds,json=referenceBounds,proto3" json:"reference_bounds,omitempty"`
	// The metadata associated with this variant set.
	Metadata []*VariantSetMetadata `protobuf:"bytes,4,rep,name=metadata,proto3" json:"metadata,omitempty"`
	// User-specified, mutable name.
	Name string `protobuf:"bytes,7,opt,name=name,proto3" json:"name,omitempty"`
	// A textual description of this variant set.
	Description          string   `protobuf:"bytes,8,opt,name=description,proto3" json:"description,omitempty"`
	XXX_NoUnkeyedLiteral struct{} `json:"-"`
	XXX_unrecognized     []byte   `json:"-"`
	XXX_sizecache        int32    `json:"-"`
}

A variant set is a collection of call sets and variants. It contains summary statistics of those contents. A variant set belongs to a dataset.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

func (*VariantSet) Descriptor 

func (*VariantSet) Descriptor() ([]byte, []int)

func (*VariantSet) GetDatasetId 

func (m *VariantSet) GetDatasetId() string

func (*VariantSet) GetDescription 

func (m *VariantSet) GetDescription() string

func (*VariantSet) GetId 

func (m *VariantSet) GetId() string

func (*VariantSet) GetMetadata 

func (m *VariantSet) GetMetadata() []*VariantSetMetadata

func (*VariantSet) GetName 

func (m *VariantSet) GetName() string

func (*VariantSet) GetReferenceBounds 

func (m *VariantSet) GetReferenceBounds() []*ReferenceBound

func (*VariantSet) GetReferenceSetId 

func (m *VariantSet) GetReferenceSetId() string

func (*VariantSet) ProtoMessage 

func (*VariantSet) ProtoMessage()

func (*VariantSet) Reset 

func (m *VariantSet) Reset()

func (*VariantSet) String 

func (m *VariantSet) String() string

func (*VariantSet) XXX_DiscardUnknown 

func (m *VariantSet) XXX_DiscardUnknown()

func (*VariantSet) XXX_Marshal 

func (m *VariantSet) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*VariantSet) XXX_Merge 

func (m *VariantSet) XXX_Merge(src proto.Message)

func (*VariantSet) XXX_Size 

func (m *VariantSet) XXX_Size() int

func (*VariantSet) XXX_Unmarshal 

func (m *VariantSet) XXX_Unmarshal(b []byte) error

type VariantSetMetadata 

type VariantSetMetadata struct {
	// The top-level key.
	Key string `protobuf:"bytes,1,opt,name=key,proto3" json:"key,omitempty"`
	// The value field for simple metadata
	Value string `protobuf:"bytes,2,opt,name=value,proto3" json:"value,omitempty"`
	// User-provided ID field, not enforced by this API.
	// Two or more pieces of structured metadata with identical
	// id and key fields are considered equivalent.
	Id string `protobuf:"bytes,4,opt,name=id,proto3" json:"id,omitempty"`
	// The type of data. Possible types include: Integer, Float,
	// Flag, Character, and String.
	Type VariantSetMetadata_Type `protobuf:"varint,5,opt,name=type,proto3,enum=google.genomics.v1.VariantSetMetadata_Type" json:"type,omitempty"`
	// The number of values that can be included in a field described by this
	// metadata.
	Number string `protobuf:"bytes,8,opt,name=number,proto3" json:"number,omitempty"`
	// A textual description of this metadata.
	Description string `protobuf:"bytes,7,opt,name=description,proto3" json:"description,omitempty"`
	// Remaining structured metadata key-value pairs. This must be of the form
	// map<string, string[]> (string key mapping to a list of string values).
	Info                 map[string]*_struct.ListValue `` /* 149-byte string literal not displayed */
	XXX_NoUnkeyedLiteral struct{}                      `json:"-"`
	XXX_unrecognized     []byte                        `json:"-"`
	XXX_sizecache        int32                         `json:"-"`
}

Metadata describes a single piece of variant call metadata. These data include a top level key and either a single value string (value) or a list of key-value pairs (info.) Value and info are mutually exclusive.

func (*VariantSetMetadata) Descriptor 

func (*VariantSetMetadata) Descriptor() ([]byte, []int)

func (*VariantSetMetadata) GetDescription 

func (m *VariantSetMetadata) GetDescription() string

func (*VariantSetMetadata) GetId 

func (m *VariantSetMetadata) GetId() string

func (*VariantSetMetadata) GetInfo 

func (m *VariantSetMetadata) GetInfo() map[string]*_struct.ListValue

func (*VariantSetMetadata) GetKey 

func (m *VariantSetMetadata) GetKey() string

func (*VariantSetMetadata) GetNumber 

func (m *VariantSetMetadata) GetNumber() string

func (*VariantSetMetadata) GetType 

func (m *VariantSetMetadata) GetType() VariantSetMetadata_Type

func (*VariantSetMetadata) GetValue 

func (m *VariantSetMetadata) GetValue() string

func (*VariantSetMetadata) ProtoMessage 

func (*VariantSetMetadata) ProtoMessage()

func (*VariantSetMetadata) Reset 

func (m *VariantSetMetadata) Reset()

func (*VariantSetMetadata) String 

func (m *VariantSetMetadata) String() string

func (*VariantSetMetadata) XXX_DiscardUnknown 

func (m *VariantSetMetadata) XXX_DiscardUnknown()

func (*VariantSetMetadata) XXX_Marshal 

func (m *VariantSetMetadata) XXX_Marshal(b []byte, deterministic bool) ([]byte, error)

func (*VariantSetMetadata) XXX_Merge 

func (m *VariantSetMetadata) XXX_Merge(src proto.Message)

func (*VariantSetMetadata) XXX_Size 

func (m *VariantSetMetadata) XXX_Size() int

func (*VariantSetMetadata) XXX_Unmarshal 

func (m *VariantSetMetadata) XXX_Unmarshal(b []byte) error

type VariantSetMetadata_Type 

type VariantSetMetadata_Type int32
const (
	VariantSetMetadata_TYPE_UNSPECIFIED VariantSetMetadata_Type = 0
	VariantSetMetadata_INTEGER          VariantSetMetadata_Type = 1
	VariantSetMetadata_FLOAT            VariantSetMetadata_Type = 2
	VariantSetMetadata_FLAG             VariantSetMetadata_Type = 3
	VariantSetMetadata_CHARACTER        VariantSetMetadata_Type = 4
	VariantSetMetadata_STRING           VariantSetMetadata_Type = 5
)

func (VariantSetMetadata_Type) EnumDescriptor 

func (VariantSetMetadata_Type) EnumDescriptor() ([]byte, []int)

func (VariantSetMetadata_Type) String 

func (x VariantSetMetadata_Type) String() string

Source Files

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