README
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golincs
This repository contains packages to assist with the LINCS project written in Go.
See the documentation at https://godoc.org/github.com/jtolds/golincs/
Example
Currently, just the characteristic direction signature method is implemented. You can try out the Go implementation by running:
$ cd $(mktemp -d)
/tmp/tmp.rqR3ZNiIbn $ GOPATH=$(pwd) go get github.com/jtolds/golincs/cmd/cds
/tmp/tmp.rqR3ZNiIbn $ bin/cds --input ~/path/to/input.txt
This package depends heavily on https://github.com/gonum/matrix, which itself may require having BLAS and/or LAPACK installed. Installation instructions for the gonum bindings for those dependencies can be found at:
Directories
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| Path | Synopsis |
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Package cds provides routines related to Ma'ayan Lab's Characteristic Direction Signature method.
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Package cds provides routines related to Ma'ayan Lab's Characteristic Direction Signature method. |
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cmd
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Package mat provides some additional utility functions that complement the excellent github.com/gonum/matrix/mat64 package.
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Package mat provides some additional utility functions that complement the excellent github.com/gonum/matrix/mat64 package. |
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Package parse provides some helpers to read tabular gene expression values.
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Package parse provides some helpers to read tabular gene expression values. |
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Package pca provides some helpers for principal component analysis.
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Package pca provides some helpers for principal component analysis. |
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