Directories
¶
| Path | Synopsis |
|---|---|
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bait
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gradient
Package gradient draws a similarity gradient for baits.
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Package gradient draws a similarity gradient for baits. |
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controls
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preys
Package preys outputs statistics on prey proteins in controls.
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Package preys outputs statistics on prey proteins in controls. |
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Package countgo count the number of genes with a GO term.
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Package countgo count the number of genes with a GO term. |
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Package goenrich finds enriched GO terms via gProfiler
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Package goenrich finds enriched GO terms via gProfiler |
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Package hydropathy calculates the average hydropathy of proteins sequences
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Package hydropathy calculates the average hydropathy of proteins sequences |
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localization
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evaluate
Package evaluate localizes preys using LBA
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Package evaluate localizes preys using LBA |
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nmfsafe
Package nmfsafe checks NMF and SAFE localizations for agreement.
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Package nmfsafe checks NMF and SAFE localizations for agreement. |
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prediction
Package prediction calculates a prediction score for each prey.
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Package prediction calculates a prediction score for each prey. |
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recovered
Package recovered reports the number of genes seen in a specific compartment.
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Package recovered reports the number of genes seen in a specific compartment. |
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Package transmembrane reports the orientation evidence for transmembrane preys.
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Package transmembrane reports the orientation evidence for transmembrane preys. |
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