track

package
Version: v0.0.0-...-6817af9 Latest Latest
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Published: Jul 29, 2020 License: GPL-3.0 Imports: 16 Imported by: 1

Documentation

Index

Constants

This section is empty.

Variables

This section is empty.

Functions

func ExportHierarchicalTrackSegmentation

func ExportHierarchicalTrackSegmentation(config SessionConfig, track Track, bedFilename, bedName, bedDescription string, compress bool, stateNames, rgbChart []string, tree generic.HmmNode, level int) error

func ExportTrack

func ExportTrack(config SessionConfig, track Track, trackFilename string) error

func ExportTrackSegmentation

func ExportTrackSegmentation(config SessionConfig, track Track, bedFilename, bedName, bedDescription string, compress bool, stateNames []string, rgbMap map[string]string, scores []Track) error

func ImportLazyTrack

func ImportLazyTrack(config SessionConfig, trackFilename string) (LazyTrackFile, error)

func ImportMultiTrackData

func ImportMultiTrackData(config SessionConfig, t ScalarType, filenamesBw []string, regions GRanges) ([]Matrix, error)

func ImportSingleTrackData

func ImportSingleTrackData(config SessionConfig, t ScalarType, filenameBw string, regions GRanges) ([]Vector, error)

func ImportTrack

func ImportTrack(config SessionConfig, trackFilename string) (SimpleTrack, error)

func ImportTrackRegions

func ImportTrackRegions(config SessionConfig, trackFilename, bedFilename string) (GRanges, error)

func ImportTrackSegmentation

func ImportTrackSegmentation(config SessionConfig, bedFilename string, genome Genome, stateMap map[string]int) (Track, error)

func MaskRegionsOnTrack

func MaskRegionsOnTrack(config SessionConfig, track Track, r GRanges) error

func SegmentationHistogram

func SegmentationHistogram(config SessionConfig, segmentationFilename string, trackFilenames []string, nstates int, genome Genome, stateMap map[string]int) ([][]map[float64]int, error)

func WriteSegmentationHistogram

func WriteSegmentationHistogram(config SessionConfig, w io.Writer, segmentationFilename string, trackFilenames []string, nstates int, genome Genome, stateMap map[string]int) error

Types

This section is empty.

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