Documentation

Index

Constants

This section is empty.

Variables

View Source 
var (
	AnnotationType_name = map[int32]string{
		0: "ANNOTATION_TYPE_UNSPECIFIED",
		1: "GENERIC",
		2: "VARIANT",
		3: "GENE",
		4: "TRANSCRIPT",
	}
	AnnotationType_value = map[string]int32{
		"ANNOTATION_TYPE_UNSPECIFIED": 0,
		"GENERIC":                     1,
		"VARIANT":                     2,
		"GENE":                        3,
		"TRANSCRIPT":                  4,
	}
)

Enum value maps for AnnotationType.

View Source 
var (
	VariantAnnotation_Type_name = map[int32]string{
		0: "TYPE_UNSPECIFIED",
		1: "TYPE_OTHER",
		2: "INSERTION",
		3: "DELETION",
		4: "SUBSTITUTION",
		5: "SNP",
		6: "STRUCTURAL",
		7: "CNV",
	}
	VariantAnnotation_Type_value = map[string]int32{
		"TYPE_UNSPECIFIED": 0,
		"TYPE_OTHER":       1,
		"INSERTION":        2,
		"DELETION":         3,
		"SUBSTITUTION":     4,
		"SNP":              5,
		"STRUCTURAL":       6,
		"CNV":              7,
	}
)

Enum value maps for VariantAnnotation_Type.

View Source 
var (
	VariantAnnotation_Effect_name = map[int32]string{
		0: "EFFECT_UNSPECIFIED",
		1: "EFFECT_OTHER",
		2: "FRAMESHIFT",
		3: "FRAME_PRESERVING_INDEL",
		4: "SYNONYMOUS_SNP",
		5: "NONSYNONYMOUS_SNP",
		6: "STOP_GAIN",
		7: "STOP_LOSS",
		8: "SPLICE_SITE_DISRUPTION",
	}
	VariantAnnotation_Effect_value = map[string]int32{
		"EFFECT_UNSPECIFIED":     0,
		"EFFECT_OTHER":           1,
		"FRAMESHIFT":             2,
		"FRAME_PRESERVING_INDEL": 3,
		"SYNONYMOUS_SNP":         4,
		"NONSYNONYMOUS_SNP":      5,
		"STOP_GAIN":              6,
		"STOP_LOSS":              7,
		"SPLICE_SITE_DISRUPTION": 8,
	}
)

Enum value maps for VariantAnnotation_Effect.

View Source 
var (
	VariantAnnotation_ClinicalSignificance_name = map[int32]string{
		0:  "CLINICAL_SIGNIFICANCE_UNSPECIFIED",
		1:  "CLINICAL_SIGNIFICANCE_OTHER",
		2:  "UNCERTAIN",
		3:  "BENIGN",
		4:  "LIKELY_BENIGN",
		5:  "LIKELY_PATHOGENIC",
		6:  "PATHOGENIC",
		7:  "DRUG_RESPONSE",
		8:  "HISTOCOMPATIBILITY",
		9:  "CONFERS_SENSITIVITY",
		10: "RISK_FACTOR",
		11: "ASSOCIATION",
		12: "PROTECTIVE",
		13: "MULTIPLE_REPORTED",
	}
	VariantAnnotation_ClinicalSignificance_value = map[string]int32{
		"CLINICAL_SIGNIFICANCE_UNSPECIFIED": 0,
		"CLINICAL_SIGNIFICANCE_OTHER":       1,
		"UNCERTAIN":                         2,
		"BENIGN":                            3,
		"LIKELY_BENIGN":                     4,
		"LIKELY_PATHOGENIC":                 5,
		"PATHOGENIC":                        6,
		"DRUG_RESPONSE":                     7,
		"HISTOCOMPATIBILITY":                8,
		"CONFERS_SENSITIVITY":               9,
		"RISK_FACTOR":                       10,
		"ASSOCIATION":                       11,
		"PROTECTIVE":                        12,
		"MULTIPLE_REPORTED":                 13,
	}
)

Enum value maps for VariantAnnotation_ClinicalSignificance.

View Source 
var (
	CigarUnit_Operation_name = map[int32]string{
		0: "OPERATION_UNSPECIFIED",
		1: "ALIGNMENT_MATCH",
		2: "INSERT",
		3: "DELETE",
		4: "SKIP",
		5: "CLIP_SOFT",
		6: "CLIP_HARD",
		7: "PAD",
		8: "SEQUENCE_MATCH",
		9: "SEQUENCE_MISMATCH",
	}
	CigarUnit_Operation_value = map[string]int32{
		"OPERATION_UNSPECIFIED": 0,
		"ALIGNMENT_MATCH":       1,
		"INSERT":                2,
		"DELETE":                3,
		"SKIP":                  4,
		"CLIP_SOFT":             5,
		"CLIP_HARD":             6,
		"PAD":                   7,
		"SEQUENCE_MATCH":        8,
		"SEQUENCE_MISMATCH":     9,
	}
)

Enum value maps for CigarUnit_Operation.

View Source 
var (
	ImportReadGroupSetsRequest_PartitionStrategy_name = map[int32]string{
		0: "PARTITION_STRATEGY_UNSPECIFIED",
		1: "PER_FILE_PER_SAMPLE",
		2: "MERGE_ALL",
	}
	ImportReadGroupSetsRequest_PartitionStrategy_value = map[string]int32{
		"PARTITION_STRATEGY_UNSPECIFIED": 0,
		"PER_FILE_PER_SAMPLE":            1,
		"MERGE_ALL":                      2,
	}
)

Enum value maps for ImportReadGroupSetsRequest_PartitionStrategy.

View Source 
var (
	InfoMergeOperation_name = map[int32]string{
		0: "INFO_MERGE_OPERATION_UNSPECIFIED",
		1: "IGNORE_NEW",
		2: "MOVE_TO_CALLS",
	}
	InfoMergeOperation_value = map[string]int32{
		"INFO_MERGE_OPERATION_UNSPECIFIED": 0,
		"IGNORE_NEW":                       1,
		"MOVE_TO_CALLS":                    2,
	}
)

Enum value maps for InfoMergeOperation.

View Source 
var (
	VariantSetMetadata_Type_name = map[int32]string{
		0: "TYPE_UNSPECIFIED",
		1: "INTEGER",
		2: "FLOAT",
		3: "FLAG",
		4: "CHARACTER",
		5: "STRING",
	}
	VariantSetMetadata_Type_value = map[string]int32{
		"TYPE_UNSPECIFIED": 0,
		"INTEGER":          1,
		"FLOAT":            2,
		"FLAG":             3,
		"CHARACTER":        4,
		"STRING":           5,
	}
)

Enum value maps for VariantSetMetadata_Type.

View Source 
var (
	ImportVariantsRequest_Format_name = map[int32]string{
		0: "FORMAT_UNSPECIFIED",
		1: "FORMAT_VCF",
		2: "FORMAT_COMPLETE_GENOMICS",
	}
	ImportVariantsRequest_Format_value = map[string]int32{
		"FORMAT_UNSPECIFIED":       0,
		"FORMAT_VCF":               1,
		"FORMAT_COMPLETE_GENOMICS": 2,
	}
)

Enum value maps for ImportVariantsRequest_Format.

View Source 
var (
	ExportVariantSetRequest_Format_name = map[int32]string{
		0: "FORMAT_UNSPECIFIED",
		1: "FORMAT_BIGQUERY",
	}
	ExportVariantSetRequest_Format_value = map[string]int32{
		"FORMAT_UNSPECIFIED": 0,
		"FORMAT_BIGQUERY":    1,
	}
)

Enum value maps for ExportVariantSetRequest_Format.

View Source 
var File_google_genomics_v1_annotations_proto protoreflect.FileDescriptor
View Source 
var File_google_genomics_v1_cigar_proto protoreflect.FileDescriptor
View Source 
var File_google_genomics_v1_datasets_proto protoreflect.FileDescriptor
View Source 
var File_google_genomics_v1_operations_proto protoreflect.FileDescriptor
View Source 
var File_google_genomics_v1_position_proto protoreflect.FileDescriptor
View Source 
var File_google_genomics_v1_range_proto protoreflect.FileDescriptor
View Source 
var File_google_genomics_v1_readalignment_proto protoreflect.FileDescriptor
View Source 
var File_google_genomics_v1_readgroup_proto protoreflect.FileDescriptor
View Source 
var File_google_genomics_v1_readgroupset_proto protoreflect.FileDescriptor
View Source 
var File_google_genomics_v1_reads_proto protoreflect.FileDescriptor
View Source 
var File_google_genomics_v1_references_proto protoreflect.FileDescriptor
View Source 
var File_google_genomics_v1_variants_proto protoreflect.FileDescriptor

Functions

func RegisterAnnotationServiceV1Server 

func RegisterAnnotationServiceV1Server(s *grpc.Server, srv AnnotationServiceV1Server)

func RegisterDatasetServiceV1Server 

func RegisterDatasetServiceV1Server(s *grpc.Server, srv DatasetServiceV1Server)

func RegisterReadServiceV1Server 

func RegisterReadServiceV1Server(s *grpc.Server, srv ReadServiceV1Server)

func RegisterReferenceServiceV1Server 

func RegisterReferenceServiceV1Server(s *grpc.Server, srv ReferenceServiceV1Server)

func RegisterStreamingReadServiceServer 

func RegisterStreamingReadServiceServer(s *grpc.Server, srv StreamingReadServiceServer)

func RegisterStreamingVariantServiceServer 

func RegisterStreamingVariantServiceServer(s *grpc.Server, srv StreamingVariantServiceServer)

func RegisterVariantServiceV1Server 

func RegisterVariantServiceV1Server(s *grpc.Server, srv VariantServiceV1Server)

Types

type Annotation 

type Annotation struct {

	// The server-generated annotation ID, unique across all annotations.
	Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// The annotation set to which this annotation belongs.
	AnnotationSetId string `protobuf:"bytes,2,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
	// The display name of this annotation.
	Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
	// The ID of the Google Genomics reference associated with this range.
	ReferenceId string `protobuf:"bytes,4,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
	// The display name corresponding to the reference specified by
	// `referenceId`, for example `chr1`, `1`, or `chrX`.
	ReferenceName string `protobuf:"bytes,5,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
	// The start position of the range on the reference, 0-based inclusive.
	Start int64 `protobuf:"varint,6,opt,name=start,proto3" json:"start,omitempty"`
	// The end position of the range on the reference, 0-based exclusive.
	End int64 `protobuf:"varint,7,opt,name=end,proto3" json:"end,omitempty"`
	// Whether this range refers to the reverse strand, as opposed to the forward
	// strand. Note that regardless of this field, the start/end position of the
	// range always refer to the forward strand.
	ReverseStrand bool `protobuf:"varint,8,opt,name=reverse_strand,json=reverseStrand,proto3" json:"reverse_strand,omitempty"`
	// The data type for this annotation. Must match the containing annotation
	// set's type.
	Type AnnotationType `protobuf:"varint,9,opt,name=type,proto3,enum=google.genomics.v1.AnnotationType" json:"type,omitempty"`
	// Types that are assignable to Value:
	//	*Annotation_Variant
	//	*Annotation_Transcript
	Value isAnnotation_Value `protobuf_oneof:"value"`
	// A map of additional read alignment information. This must be of the form
	// map<string, string[]> (string key mapping to a list of string values).
	Info map[string]*structpb.ListValue `` /* 150-byte string literal not displayed */
	// contains filtered or unexported fields
}

An annotation describes a region of reference genome. The value of an annotation may be one of several canonical types, supplemented by arbitrary info tags. An annotation is not inherently associated with a specific sample or individual (though a client could choose to use annotations in this way). Example canonical annotation types are `GENE` and `VARIANT`.

func (*Annotation) Descriptor 

func (*Annotation) Descriptor() ([]byte, []int)

Deprecated: Use Annotation.ProtoReflect.Descriptor instead.

func (*Annotation) GetAnnotationSetId 

func (x *Annotation) GetAnnotationSetId() string

func (*Annotation) GetEnd 

func (x *Annotation) GetEnd() int64

func (*Annotation) GetId 

func (x *Annotation) GetId() string

func (*Annotation) GetInfo 

func (x *Annotation) GetInfo() map[string]*structpb.ListValue

func (*Annotation) GetName 

func (x *Annotation) GetName() string

func (*Annotation) GetReferenceId 

func (x *Annotation) GetReferenceId() string

func (*Annotation) GetReferenceName 

func (x *Annotation) GetReferenceName() string

func (*Annotation) GetReverseStrand 

func (x *Annotation) GetReverseStrand() bool

func (*Annotation) GetStart 

func (x *Annotation) GetStart() int64

func (*Annotation) GetTranscript 

func (x *Annotation) GetTranscript() *Transcript

func (*Annotation) GetType 

func (x *Annotation) GetType() AnnotationType

func (*Annotation) GetValue 

func (m *Annotation) GetValue() isAnnotation_Value

func (*Annotation) GetVariant 

func (x *Annotation) GetVariant() *VariantAnnotation

func (*Annotation) ProtoMessage 

func (*Annotation) ProtoMessage()

func (*Annotation) ProtoReflect 

func (x *Annotation) ProtoReflect() protoreflect.Message

func (*Annotation) Reset 

func (x *Annotation) Reset()

func (*Annotation) String 

func (x *Annotation) String() string

type AnnotationServiceV1Client 

type AnnotationServiceV1Client interface {
	// Creates a new annotation set. Caller must have WRITE permission for the
	// associated dataset.
	//
	// The following fields are required:
	//
	//   * [datasetId][google.genomics.v1.AnnotationSet.dataset_id]
	//   * [referenceSetId][google.genomics.v1.AnnotationSet.reference_set_id]
	//
	// All other fields may be optionally specified, unless documented as being
	// server-generated (for example, the `id` field).
	CreateAnnotationSet(ctx context.Context, in *CreateAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error)
	// Gets an annotation set. Caller must have READ permission for
	// the associated dataset.
	GetAnnotationSet(ctx context.Context, in *GetAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error)
	// Updates an annotation set. The update must respect all mutability
	// restrictions and other invariants described on the annotation set resource.
	// Caller must have WRITE permission for the associated dataset.
	UpdateAnnotationSet(ctx context.Context, in *UpdateAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error)
	// Deletes an annotation set. Caller must have WRITE permission
	// for the associated annotation set.
	DeleteAnnotationSet(ctx context.Context, in *DeleteAnnotationSetRequest, opts ...grpc.CallOption) (*emptypb.Empty, error)
	// Searches for annotation sets that match the given criteria. Annotation sets
	// are returned in an unspecified order. This order is consistent, such that
	// two queries for the same content (regardless of page size) yield annotation
	// sets in the same order across their respective streams of paginated
	// responses. Caller must have READ permission for the queried datasets.
	SearchAnnotationSets(ctx context.Context, in *SearchAnnotationSetsRequest, opts ...grpc.CallOption) (*SearchAnnotationSetsResponse, error)
	// Creates a new annotation. Caller must have WRITE permission
	// for the associated annotation set.
	//
	// The following fields are required:
	//
	// * [annotationSetId][google.genomics.v1.Annotation.annotation_set_id]
	// * [referenceName][google.genomics.v1.Annotation.reference_name] or
	//   [referenceId][google.genomics.v1.Annotation.reference_id]
	//
	// ### Transcripts
	//
	// For annotations of type TRANSCRIPT, the following fields of
	// [transcript][google.genomics.v1.Annotation.transcript] must be provided:
	//
	// * [exons.start][google.genomics.v1.Transcript.Exon.start]
	// * [exons.end][google.genomics.v1.Transcript.Exon.end]
	//
	// All other fields may be optionally specified, unless documented as being
	// server-generated (for example, the `id` field). The annotated
	// range must be no longer than 100Mbp (mega base pairs). See the
	// [Annotation resource][google.genomics.v1.Annotation]
	// for additional restrictions on each field.
	CreateAnnotation(ctx context.Context, in *CreateAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error)
	// Creates one or more new annotations atomically. All annotations must
	// belong to the same annotation set. Caller must have WRITE
	// permission for this annotation set. For optimal performance, batch
	// positionally adjacent annotations together.
	//
	// If the request has a systemic issue, such as an attempt to write to
	// an inaccessible annotation set, the entire RPC will fail accordingly. For
	// lesser data issues, when possible an error will be isolated to the
	// corresponding batch entry in the response; the remaining well formed
	// annotations will be created normally.
	//
	// For details on the requirements for each individual annotation resource,
	// see
	// [CreateAnnotation][google.genomics.v1.AnnotationServiceV1.CreateAnnotation].
	BatchCreateAnnotations(ctx context.Context, in *BatchCreateAnnotationsRequest, opts ...grpc.CallOption) (*BatchCreateAnnotationsResponse, error)
	// Gets an annotation. Caller must have READ permission
	// for the associated annotation set.
	GetAnnotation(ctx context.Context, in *GetAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error)
	// Updates an annotation. Caller must have
	// WRITE permission for the associated dataset.
	UpdateAnnotation(ctx context.Context, in *UpdateAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error)
	// Deletes an annotation. Caller must have WRITE permission for
	// the associated annotation set.
	DeleteAnnotation(ctx context.Context, in *DeleteAnnotationRequest, opts ...grpc.CallOption) (*emptypb.Empty, error)
	// Searches for annotations that match the given criteria. Results are
	// ordered by genomic coordinate (by reference sequence, then position).
	// Annotations with equivalent genomic coordinates are returned in an
	// unspecified order. This order is consistent, such that two queries for the
	// same content (regardless of page size) yield annotations in the same order
	// across their respective streams of paginated responses. Caller must have
	// READ permission for the queried annotation sets.
	SearchAnnotations(ctx context.Context, in *SearchAnnotationsRequest, opts ...grpc.CallOption) (*SearchAnnotationsResponse, error)
}

AnnotationServiceV1Client is the client API for AnnotationServiceV1 service.

For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.

func NewAnnotationServiceV1Client 

func NewAnnotationServiceV1Client(cc grpc.ClientConnInterface) AnnotationServiceV1Client

type AnnotationServiceV1Server 

type AnnotationServiceV1Server interface {
	// Creates a new annotation set. Caller must have WRITE permission for the
	// associated dataset.
	//
	// The following fields are required:
	//
	//   * [datasetId][google.genomics.v1.AnnotationSet.dataset_id]
	//   * [referenceSetId][google.genomics.v1.AnnotationSet.reference_set_id]
	//
	// All other fields may be optionally specified, unless documented as being
	// server-generated (for example, the `id` field).
	CreateAnnotationSet(context.Context, *CreateAnnotationSetRequest) (*AnnotationSet, error)
	// Gets an annotation set. Caller must have READ permission for
	// the associated dataset.
	GetAnnotationSet(context.Context, *GetAnnotationSetRequest) (*AnnotationSet, error)
	// Updates an annotation set. The update must respect all mutability
	// restrictions and other invariants described on the annotation set resource.
	// Caller must have WRITE permission for the associated dataset.
	UpdateAnnotationSet(context.Context, *UpdateAnnotationSetRequest) (*AnnotationSet, error)
	// Deletes an annotation set. Caller must have WRITE permission
	// for the associated annotation set.
	DeleteAnnotationSet(context.Context, *DeleteAnnotationSetRequest) (*emptypb.Empty, error)
	// Searches for annotation sets that match the given criteria. Annotation sets
	// are returned in an unspecified order. This order is consistent, such that
	// two queries for the same content (regardless of page size) yield annotation
	// sets in the same order across their respective streams of paginated
	// responses. Caller must have READ permission for the queried datasets.
	SearchAnnotationSets(context.Context, *SearchAnnotationSetsRequest) (*SearchAnnotationSetsResponse, error)
	// Creates a new annotation. Caller must have WRITE permission
	// for the associated annotation set.
	//
	// The following fields are required:
	//
	// * [annotationSetId][google.genomics.v1.Annotation.annotation_set_id]
	// * [referenceName][google.genomics.v1.Annotation.reference_name] or
	//   [referenceId][google.genomics.v1.Annotation.reference_id]
	//
	// ### Transcripts
	//
	// For annotations of type TRANSCRIPT, the following fields of
	// [transcript][google.genomics.v1.Annotation.transcript] must be provided:
	//
	// * [exons.start][google.genomics.v1.Transcript.Exon.start]
	// * [exons.end][google.genomics.v1.Transcript.Exon.end]
	//
	// All other fields may be optionally specified, unless documented as being
	// server-generated (for example, the `id` field). The annotated
	// range must be no longer than 100Mbp (mega base pairs). See the
	// [Annotation resource][google.genomics.v1.Annotation]
	// for additional restrictions on each field.
	CreateAnnotation(context.Context, *CreateAnnotationRequest) (*Annotation, error)
	// Creates one or more new annotations atomically. All annotations must
	// belong to the same annotation set. Caller must have WRITE
	// permission for this annotation set. For optimal performance, batch
	// positionally adjacent annotations together.
	//
	// If the request has a systemic issue, such as an attempt to write to
	// an inaccessible annotation set, the entire RPC will fail accordingly. For
	// lesser data issues, when possible an error will be isolated to the
	// corresponding batch entry in the response; the remaining well formed
	// annotations will be created normally.
	//
	// For details on the requirements for each individual annotation resource,
	// see
	// [CreateAnnotation][google.genomics.v1.AnnotationServiceV1.CreateAnnotation].
	BatchCreateAnnotations(context.Context, *BatchCreateAnnotationsRequest) (*BatchCreateAnnotationsResponse, error)
	// Gets an annotation. Caller must have READ permission
	// for the associated annotation set.
	GetAnnotation(context.Context, *GetAnnotationRequest) (*Annotation, error)
	// Updates an annotation. Caller must have
	// WRITE permission for the associated dataset.
	UpdateAnnotation(context.Context, *UpdateAnnotationRequest) (*Annotation, error)
	// Deletes an annotation. Caller must have WRITE permission for
	// the associated annotation set.
	DeleteAnnotation(context.Context, *DeleteAnnotationRequest) (*emptypb.Empty, error)
	// Searches for annotations that match the given criteria. Results are
	// ordered by genomic coordinate (by reference sequence, then position).
	// Annotations with equivalent genomic coordinates are returned in an
	// unspecified order. This order is consistent, such that two queries for the
	// same content (regardless of page size) yield annotations in the same order
	// across their respective streams of paginated responses. Caller must have
	// READ permission for the queried annotation sets.
	SearchAnnotations(context.Context, *SearchAnnotationsRequest) (*SearchAnnotationsResponse, error)
}

AnnotationServiceV1Server is the server API for AnnotationServiceV1 service.

type AnnotationSet 

type AnnotationSet struct {

	// The server-generated annotation set ID, unique across all annotation sets.
	Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// The dataset to which this annotation set belongs.
	DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
	// The ID of the reference set that defines the coordinate space for this
	// set's annotations.
	ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
	// The display name for this annotation set.
	Name string `protobuf:"bytes,4,opt,name=name,proto3" json:"name,omitempty"`
	// The source URI describing the file from which this annotation set was
	// generated, if any.
	SourceUri string `protobuf:"bytes,5,opt,name=source_uri,json=sourceUri,proto3" json:"source_uri,omitempty"`
	// The type of annotations contained within this set.
	Type AnnotationType `protobuf:"varint,6,opt,name=type,proto3,enum=google.genomics.v1.AnnotationType" json:"type,omitempty"`
	// A map of additional read alignment information. This must be of the form
	// map<string, string[]> (string key mapping to a list of string values).
	Info map[string]*structpb.ListValue `` /* 150-byte string literal not displayed */
	// contains filtered or unexported fields
}

An annotation set is a logical grouping of annotations that share consistent type information and provenance. Examples of annotation sets include 'all genes from refseq', and 'all variant annotations from ClinVar'.

func (*AnnotationSet) Descriptor 

func (*AnnotationSet) Descriptor() ([]byte, []int)

Deprecated: Use AnnotationSet.ProtoReflect.Descriptor instead.

func (*AnnotationSet) GetDatasetId 

func (x *AnnotationSet) GetDatasetId() string

func (*AnnotationSet) GetId 

func (x *AnnotationSet) GetId() string

func (*AnnotationSet) GetInfo 

func (x *AnnotationSet) GetInfo() map[string]*structpb.ListValue

func (*AnnotationSet) GetName 

func (x *AnnotationSet) GetName() string

func (*AnnotationSet) GetReferenceSetId 

func (x *AnnotationSet) GetReferenceSetId() string

func (*AnnotationSet) GetSourceUri 

func (x *AnnotationSet) GetSourceUri() string

func (*AnnotationSet) GetType 

func (x *AnnotationSet) GetType() AnnotationType

func (*AnnotationSet) ProtoMessage 

func (*AnnotationSet) ProtoMessage()

func (*AnnotationSet) ProtoReflect 

func (x *AnnotationSet) ProtoReflect() protoreflect.Message

func (*AnnotationSet) Reset 

func (x *AnnotationSet) Reset()

func (*AnnotationSet) String 

func (x *AnnotationSet) String() string

type AnnotationType 

type AnnotationType int32

When an [Annotation][google.genomics.v1.Annotation] or [AnnotationSet][google.genomics.v1.AnnotationSet] is created, if `type` is not specified it will be set to `GENERIC`. 

const (
	AnnotationType_ANNOTATION_TYPE_UNSPECIFIED AnnotationType = 0
	// A `GENERIC` annotation type should be used when no other annotation
	// type will suffice. This represents an untyped annotation of the reference
	// genome.
	AnnotationType_GENERIC AnnotationType = 1
	// A `VARIANT` annotation type.
	AnnotationType_VARIANT AnnotationType = 2
	// A `GENE` annotation type represents the existence of a gene at the
	// associated reference coordinates. The start coordinate is typically the
	// gene's transcription start site and the end is typically the end of the
	// gene's last exon.
	AnnotationType_GENE AnnotationType = 3
	// A `TRANSCRIPT` annotation type represents the assertion that a
	// particular region of the reference genome may be transcribed as RNA.
	AnnotationType_TRANSCRIPT AnnotationType = 4
)

func (AnnotationType) Descriptor 

func (AnnotationType) Descriptor() protoreflect.EnumDescriptor

func (AnnotationType) Enum 

func (x AnnotationType) Enum() *AnnotationType

func (AnnotationType) EnumDescriptor 

func (AnnotationType) EnumDescriptor() ([]byte, []int)

Deprecated: Use AnnotationType.Descriptor instead.

func (AnnotationType) Number 

func (x AnnotationType) Number() protoreflect.EnumNumber

func (AnnotationType) String 

func (x AnnotationType) String() string

func (AnnotationType) Type 

func (AnnotationType) Type() protoreflect.EnumType

type Annotation_Transcript 

type Annotation_Transcript struct {
	// A transcript value represents the assertion that a particular region of
	// the reference genome may be transcribed as RNA. An alternative splicing
	// pattern would be represented as a separate transcript object. This field
	// is only set for annotations of type `TRANSCRIPT`.
	Transcript *Transcript `protobuf:"bytes,11,opt,name=transcript,proto3,oneof"`
}

type Annotation_Variant 

type Annotation_Variant struct {
	// A variant annotation, which describes the effect of a variant on the
	// genome, the coding sequence, and/or higher level consequences at the
	// organism level e.g. pathogenicity. This field is only set for annotations
	// of type `VARIANT`.
	Variant *VariantAnnotation `protobuf:"bytes,10,opt,name=variant,proto3,oneof"`
}

type BatchCreateAnnotationsRequest 

type BatchCreateAnnotationsRequest struct {

	// The annotations to be created. At most 4096 can be specified in a single
	// request.
	Annotations []*Annotation `protobuf:"bytes,1,rep,name=annotations,proto3" json:"annotations,omitempty"`
	// A unique request ID which enables the server to detect duplicated requests.
	// If provided, duplicated requests will result in the same response; if not
	// provided, duplicated requests may result in duplicated data. For a given
	// annotation set, callers should not reuse `request_id`s when writing
	// different batches of annotations - behavior in this case is undefined.
	// A common approach is to use a UUID. For batch jobs where worker crashes are
	// a possibility, consider using some unique variant of a worker or run ID.
	RequestId string `protobuf:"bytes,2,opt,name=request_id,json=requestId,proto3" json:"request_id,omitempty"`
	// contains filtered or unexported fields
}

func (*BatchCreateAnnotationsRequest) Descriptor 

func (*BatchCreateAnnotationsRequest) Descriptor() ([]byte, []int)

Deprecated: Use BatchCreateAnnotationsRequest.ProtoReflect.Descriptor instead.

func (*BatchCreateAnnotationsRequest) GetAnnotations 

func (x *BatchCreateAnnotationsRequest) GetAnnotations() []*Annotation

func (*BatchCreateAnnotationsRequest) GetRequestId 

func (x *BatchCreateAnnotationsRequest) GetRequestId() string

func (*BatchCreateAnnotationsRequest) ProtoMessage 

func (*BatchCreateAnnotationsRequest) ProtoMessage()

func (*BatchCreateAnnotationsRequest) ProtoReflect 

func (x *BatchCreateAnnotationsRequest) ProtoReflect() protoreflect.Message

func (*BatchCreateAnnotationsRequest) Reset 

func (x *BatchCreateAnnotationsRequest) Reset()

func (*BatchCreateAnnotationsRequest) String 

func (x *BatchCreateAnnotationsRequest) String() string

type BatchCreateAnnotationsResponse 

type BatchCreateAnnotationsResponse struct {

	// The resulting per-annotation entries, ordered consistently with the
	// original request.
	Entries []*BatchCreateAnnotationsResponse_Entry `protobuf:"bytes,1,rep,name=entries,proto3" json:"entries,omitempty"`
	// contains filtered or unexported fields
}

func (*BatchCreateAnnotationsResponse) Descriptor 

func (*BatchCreateAnnotationsResponse) Descriptor() ([]byte, []int)

Deprecated: Use BatchCreateAnnotationsResponse.ProtoReflect.Descriptor instead.

func (*BatchCreateAnnotationsResponse) GetEntries 

func (x *BatchCreateAnnotationsResponse) GetEntries() []*BatchCreateAnnotationsResponse_Entry

func (*BatchCreateAnnotationsResponse) ProtoMessage 

func (*BatchCreateAnnotationsResponse) ProtoMessage()

func (*BatchCreateAnnotationsResponse) ProtoReflect 

func (x *BatchCreateAnnotationsResponse) ProtoReflect() protoreflect.Message

func (*BatchCreateAnnotationsResponse) Reset 

func (x *BatchCreateAnnotationsResponse) Reset()

func (*BatchCreateAnnotationsResponse) String 

func (x *BatchCreateAnnotationsResponse) String() string

type BatchCreateAnnotationsResponse_Entry 

type BatchCreateAnnotationsResponse_Entry struct {

	// The creation status.
	Status *status.Status `protobuf:"bytes,1,opt,name=status,proto3" json:"status,omitempty"`
	// The created annotation, if creation was successful.
	Annotation *Annotation `protobuf:"bytes,2,opt,name=annotation,proto3" json:"annotation,omitempty"`
	// contains filtered or unexported fields
}

func (*BatchCreateAnnotationsResponse_Entry) Descriptor 

func (*BatchCreateAnnotationsResponse_Entry) Descriptor() ([]byte, []int)

Deprecated: Use BatchCreateAnnotationsResponse_Entry.ProtoReflect.Descriptor instead.

func (*BatchCreateAnnotationsResponse_Entry) GetAnnotation 

func (x *BatchCreateAnnotationsResponse_Entry) GetAnnotation() *Annotation

func (*BatchCreateAnnotationsResponse_Entry) GetStatus 

func (x *BatchCreateAnnotationsResponse_Entry) GetStatus() *status.Status

func (*BatchCreateAnnotationsResponse_Entry) ProtoMessage 

func (*BatchCreateAnnotationsResponse_Entry) ProtoMessage()

func (*BatchCreateAnnotationsResponse_Entry) ProtoReflect 

func (x *BatchCreateAnnotationsResponse_Entry) ProtoReflect() protoreflect.Message

func (*BatchCreateAnnotationsResponse_Entry) Reset 

func (x *BatchCreateAnnotationsResponse_Entry) Reset()

func (*BatchCreateAnnotationsResponse_Entry) String 

func (x *BatchCreateAnnotationsResponse_Entry) String() string

type CallSet 

type CallSet struct {

	// The server-generated call set ID, unique across all call sets.
	Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// The call set name.
	Name string `protobuf:"bytes,2,opt,name=name,proto3" json:"name,omitempty"`
	// The sample ID this call set corresponds to.
	SampleId string `protobuf:"bytes,7,opt,name=sample_id,json=sampleId,proto3" json:"sample_id,omitempty"`
	// The IDs of the variant sets this call set belongs to. This field must
	// have exactly length one, as a call set belongs to a single variant set.
	// This field is repeated for compatibility with the
	// [GA4GH 0.5.1
	// API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
	VariantSetIds []string `protobuf:"bytes,6,rep,name=variant_set_ids,json=variantSetIds,proto3" json:"variant_set_ids,omitempty"`
	// The date this call set was created in milliseconds from the epoch.
	Created int64 `protobuf:"varint,5,opt,name=created,proto3" json:"created,omitempty"`
	// A map of additional call set information. This must be of the form
	// map<string, string[]> (string key mapping to a list of string values).
	Info map[string]*structpb.ListValue `` /* 149-byte string literal not displayed */
	// contains filtered or unexported fields
}

A call set is a collection of variant calls, typically for one sample. It belongs to a variant set.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

func (*CallSet) Descriptor 

func (*CallSet) Descriptor() ([]byte, []int)

Deprecated: Use CallSet.ProtoReflect.Descriptor instead.

func (*CallSet) GetCreated 

func (x *CallSet) GetCreated() int64

func (*CallSet) GetId 

func (x *CallSet) GetId() string

func (*CallSet) GetInfo 

func (x *CallSet) GetInfo() map[string]*structpb.ListValue

func (*CallSet) GetName 

func (x *CallSet) GetName() string

func (*CallSet) GetSampleId 

func (x *CallSet) GetSampleId() string

func (*CallSet) GetVariantSetIds 

func (x *CallSet) GetVariantSetIds() []string

func (*CallSet) ProtoMessage 

func (*CallSet) ProtoMessage()

func (*CallSet) ProtoReflect 

func (x *CallSet) ProtoReflect() protoreflect.Message

func (*CallSet) Reset 

func (x *CallSet) Reset()

func (*CallSet) String 

func (x *CallSet) String() string

type CigarUnit 

type CigarUnit struct {
	Operation CigarUnit_Operation `protobuf:"varint,1,opt,name=operation,proto3,enum=google.genomics.v1.CigarUnit_Operation" json:"operation,omitempty"`
	// The number of genomic bases that the operation runs for. Required.
	OperationLength int64 `protobuf:"varint,2,opt,name=operation_length,json=operationLength,proto3" json:"operation_length,omitempty"`
	// `referenceSequence` is only used at mismatches
	// (`SEQUENCE_MISMATCH`) and deletions (`DELETE`).
	// Filling this field replaces SAM's MD tag. If the relevant information is
	// not available, this field is unset.
	ReferenceSequence string `protobuf:"bytes,3,opt,name=reference_sequence,json=referenceSequence,proto3" json:"reference_sequence,omitempty"`
	// contains filtered or unexported fields
}

A single CIGAR operation.

func (*CigarUnit) Descriptor 

func (*CigarUnit) Descriptor() ([]byte, []int)

Deprecated: Use CigarUnit.ProtoReflect.Descriptor instead.

func (*CigarUnit) GetOperation 

func (x *CigarUnit) GetOperation() CigarUnit_Operation

func (*CigarUnit) GetOperationLength 

func (x *CigarUnit) GetOperationLength() int64

func (*CigarUnit) GetReferenceSequence 

func (x *CigarUnit) GetReferenceSequence() string

func (*CigarUnit) ProtoMessage 

func (*CigarUnit) ProtoMessage()

func (*CigarUnit) ProtoReflect 

func (x *CigarUnit) ProtoReflect() protoreflect.Message

func (*CigarUnit) Reset 

func (x *CigarUnit) Reset()

func (*CigarUnit) String 

func (x *CigarUnit) String() string

type CigarUnit_Operation 

type CigarUnit_Operation int32

Describes the different types of CIGAR alignment operations that exist. Used wherever CIGAR alignments are used. 

const (
	CigarUnit_OPERATION_UNSPECIFIED CigarUnit_Operation = 0
	// An alignment match indicates that a sequence can be aligned to the
	// reference without evidence of an INDEL. Unlike the
	// `SEQUENCE_MATCH` and `SEQUENCE_MISMATCH` operators,
	// the `ALIGNMENT_MATCH` operator does not indicate whether the
	// reference and read sequences are an exact match. This operator is
	// equivalent to SAM's `M`.
	CigarUnit_ALIGNMENT_MATCH CigarUnit_Operation = 1
	// The insert operator indicates that the read contains evidence of bases
	// being inserted into the reference. This operator is equivalent to SAM's
	// `I`.
	CigarUnit_INSERT CigarUnit_Operation = 2
	// The delete operator indicates that the read contains evidence of bases
	// being deleted from the reference. This operator is equivalent to SAM's
	// `D`.
	CigarUnit_DELETE CigarUnit_Operation = 3
	// The skip operator indicates that this read skips a long segment of the
	// reference, but the bases have not been deleted. This operator is commonly
	// used when working with RNA-seq data, where reads may skip long segments
	// of the reference between exons. This operator is equivalent to SAM's
	// `N`.
	CigarUnit_SKIP CigarUnit_Operation = 4
	// The soft clip operator indicates that bases at the start/end of a read
	// have not been considered during alignment. This may occur if the majority
	// of a read maps, except for low quality bases at the start/end of a read.
	// This operator is equivalent to SAM's `S`. Bases that are soft
	// clipped will still be stored in the read.
	CigarUnit_CLIP_SOFT CigarUnit_Operation = 5
	// The hard clip operator indicates that bases at the start/end of a read
	// have been omitted from this alignment. This may occur if this linear
	// alignment is part of a chimeric alignment, or if the read has been
	// trimmed (for example, during error correction or to trim poly-A tails for
	// RNA-seq). This operator is equivalent to SAM's `H`.
	CigarUnit_CLIP_HARD CigarUnit_Operation = 6
	// The pad operator indicates that there is padding in an alignment. This
	// operator is equivalent to SAM's `P`.
	CigarUnit_PAD CigarUnit_Operation = 7
	// This operator indicates that this portion of the aligned sequence exactly
	// matches the reference. This operator is equivalent to SAM's `=`.
	CigarUnit_SEQUENCE_MATCH CigarUnit_Operation = 8
	// This operator indicates that this portion of the aligned sequence is an
	// alignment match to the reference, but a sequence mismatch. This can
	// indicate a SNP or a read error. This operator is equivalent to SAM's
	// `X`.
	CigarUnit_SEQUENCE_MISMATCH CigarUnit_Operation = 9
)

func (CigarUnit_Operation) Descriptor 

func (CigarUnit_Operation) Descriptor() protoreflect.EnumDescriptor

func (CigarUnit_Operation) Enum 

func (x CigarUnit_Operation) Enum() *CigarUnit_Operation

func (CigarUnit_Operation) EnumDescriptor 

func (CigarUnit_Operation) EnumDescriptor() ([]byte, []int)

Deprecated: Use CigarUnit_Operation.Descriptor instead.

func (CigarUnit_Operation) Number 

func (x CigarUnit_Operation) Number() protoreflect.EnumNumber

func (CigarUnit_Operation) String 

func (x CigarUnit_Operation) String() string

func (CigarUnit_Operation) Type 

func (CigarUnit_Operation) Type() protoreflect.EnumType

type CoverageBucket 

type CoverageBucket struct {

	// The genomic coordinate range spanned by this bucket.
	Range *Range `protobuf:"bytes,1,opt,name=range,proto3" json:"range,omitempty"`
	// The average number of reads which are aligned to each individual
	// reference base in this bucket.
	MeanCoverage float32 `protobuf:"fixed32,2,opt,name=mean_coverage,json=meanCoverage,proto3" json:"mean_coverage,omitempty"`
	// contains filtered or unexported fields
}

A bucket over which read coverage has been precomputed. A bucket corresponds to a specific range of the reference sequence.

func (*CoverageBucket) Descriptor 

func (*CoverageBucket) Descriptor() ([]byte, []int)

Deprecated: Use CoverageBucket.ProtoReflect.Descriptor instead.

func (*CoverageBucket) GetMeanCoverage 

func (x *CoverageBucket) GetMeanCoverage() float32

func (*CoverageBucket) GetRange 

func (x *CoverageBucket) GetRange() *Range

func (*CoverageBucket) ProtoMessage 

func (*CoverageBucket) ProtoMessage()

func (*CoverageBucket) ProtoReflect 

func (x *CoverageBucket) ProtoReflect() protoreflect.Message

func (*CoverageBucket) Reset 

func (x *CoverageBucket) Reset()

func (*CoverageBucket) String 

func (x *CoverageBucket) String() string

type CreateAnnotationRequest 

type CreateAnnotationRequest struct {

	// The annotation to be created.
	Annotation *Annotation `protobuf:"bytes,1,opt,name=annotation,proto3" json:"annotation,omitempty"`
	// contains filtered or unexported fields
}

func (*CreateAnnotationRequest) Descriptor 

func (*CreateAnnotationRequest) Descriptor() ([]byte, []int)

Deprecated: Use CreateAnnotationRequest.ProtoReflect.Descriptor instead.

func (*CreateAnnotationRequest) GetAnnotation 

func (x *CreateAnnotationRequest) GetAnnotation() *Annotation

func (*CreateAnnotationRequest) ProtoMessage 

func (*CreateAnnotationRequest) ProtoMessage()

func (*CreateAnnotationRequest) ProtoReflect 

func (x *CreateAnnotationRequest) ProtoReflect() protoreflect.Message

func (*CreateAnnotationRequest) Reset 

func (x *CreateAnnotationRequest) Reset()

func (*CreateAnnotationRequest) String 

func (x *CreateAnnotationRequest) String() string

type CreateAnnotationSetRequest 

type CreateAnnotationSetRequest struct {

	// The annotation set to create.
	AnnotationSet *AnnotationSet `protobuf:"bytes,1,opt,name=annotation_set,json=annotationSet,proto3" json:"annotation_set,omitempty"`
	// contains filtered or unexported fields
}

func (*CreateAnnotationSetRequest) Descriptor 

func (*CreateAnnotationSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use CreateAnnotationSetRequest.ProtoReflect.Descriptor instead.

func (*CreateAnnotationSetRequest) GetAnnotationSet 

func (x *CreateAnnotationSetRequest) GetAnnotationSet() *AnnotationSet

func (*CreateAnnotationSetRequest) ProtoMessage 

func (*CreateAnnotationSetRequest) ProtoMessage()

func (*CreateAnnotationSetRequest) ProtoReflect 

func (x *CreateAnnotationSetRequest) ProtoReflect() protoreflect.Message

func (*CreateAnnotationSetRequest) Reset 

func (x *CreateAnnotationSetRequest) Reset()

func (*CreateAnnotationSetRequest) String 

func (x *CreateAnnotationSetRequest) String() string

type CreateCallSetRequest 

type CreateCallSetRequest struct {

	// The call set to be created.
	CallSet *CallSet `protobuf:"bytes,1,opt,name=call_set,json=callSet,proto3" json:"call_set,omitempty"`
	// contains filtered or unexported fields
}

func (*CreateCallSetRequest) Descriptor 

func (*CreateCallSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use CreateCallSetRequest.ProtoReflect.Descriptor instead.

func (*CreateCallSetRequest) GetCallSet 

func (x *CreateCallSetRequest) GetCallSet() *CallSet

func (*CreateCallSetRequest) ProtoMessage 

func (*CreateCallSetRequest) ProtoMessage()

func (*CreateCallSetRequest) ProtoReflect 

func (x *CreateCallSetRequest) ProtoReflect() protoreflect.Message

func (*CreateCallSetRequest) Reset 

func (x *CreateCallSetRequest) Reset()

func (*CreateCallSetRequest) String 

func (x *CreateCallSetRequest) String() string

type CreateDatasetRequest 

type CreateDatasetRequest struct {

	// The dataset to be created. Must contain projectId and name.
	Dataset *Dataset `protobuf:"bytes,1,opt,name=dataset,proto3" json:"dataset,omitempty"`
	// contains filtered or unexported fields
}

func (*CreateDatasetRequest) Descriptor 

func (*CreateDatasetRequest) Descriptor() ([]byte, []int)

Deprecated: Use CreateDatasetRequest.ProtoReflect.Descriptor instead.

func (*CreateDatasetRequest) GetDataset 

func (x *CreateDatasetRequest) GetDataset() *Dataset

func (*CreateDatasetRequest) ProtoMessage 

func (*CreateDatasetRequest) ProtoMessage()

func (*CreateDatasetRequest) ProtoReflect 

func (x *CreateDatasetRequest) ProtoReflect() protoreflect.Message

func (*CreateDatasetRequest) Reset 

func (x *CreateDatasetRequest) Reset()

func (*CreateDatasetRequest) String 

func (x *CreateDatasetRequest) String() string

type CreateVariantRequest 

type CreateVariantRequest struct {

	// The variant to be created.
	Variant *Variant `protobuf:"bytes,1,opt,name=variant,proto3" json:"variant,omitempty"`
	// contains filtered or unexported fields
}

func (*CreateVariantRequest) Descriptor 

func (*CreateVariantRequest) Descriptor() ([]byte, []int)

Deprecated: Use CreateVariantRequest.ProtoReflect.Descriptor instead.

func (*CreateVariantRequest) GetVariant 

func (x *CreateVariantRequest) GetVariant() *Variant

func (*CreateVariantRequest) ProtoMessage 

func (*CreateVariantRequest) ProtoMessage()

func (*CreateVariantRequest) ProtoReflect 

func (x *CreateVariantRequest) ProtoReflect() protoreflect.Message

func (*CreateVariantRequest) Reset 

func (x *CreateVariantRequest) Reset()

func (*CreateVariantRequest) String 

func (x *CreateVariantRequest) String() string

type CreateVariantSetRequest 

type CreateVariantSetRequest struct {

	// Required. The variant set to be created. Must have a valid `datasetId`.
	VariantSet *VariantSet `protobuf:"bytes,1,opt,name=variant_set,json=variantSet,proto3" json:"variant_set,omitempty"`
	// contains filtered or unexported fields
}

The CreateVariantSet request

func (*CreateVariantSetRequest) Descriptor 

func (*CreateVariantSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use CreateVariantSetRequest.ProtoReflect.Descriptor instead.

func (*CreateVariantSetRequest) GetVariantSet 

func (x *CreateVariantSetRequest) GetVariantSet() *VariantSet

func (*CreateVariantSetRequest) ProtoMessage 

func (*CreateVariantSetRequest) ProtoMessage()

func (*CreateVariantSetRequest) ProtoReflect 

func (x *CreateVariantSetRequest) ProtoReflect() protoreflect.Message

func (*CreateVariantSetRequest) Reset 

func (x *CreateVariantSetRequest) Reset()

func (*CreateVariantSetRequest) String 

func (x *CreateVariantSetRequest) String() string

type Dataset 

type Dataset struct {

	// The server-generated dataset ID, unique across all datasets.
	Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// The Google Cloud project ID that this dataset belongs to.
	ProjectId string `protobuf:"bytes,2,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
	// The dataset name.
	Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
	// The time this dataset was created, in seconds from the epoch.
	CreateTime *timestamppb.Timestamp `protobuf:"bytes,4,opt,name=create_time,json=createTime,proto3" json:"create_time,omitempty"`
	// contains filtered or unexported fields
}

A Dataset is a collection of genomic data.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

func (*Dataset) Descriptor 

func (*Dataset) Descriptor() ([]byte, []int)

Deprecated: Use Dataset.ProtoReflect.Descriptor instead.

func (*Dataset) GetCreateTime 

func (x *Dataset) GetCreateTime() *timestamppb.Timestamp

func (*Dataset) GetId 

func (x *Dataset) GetId() string

func (*Dataset) GetName 

func (x *Dataset) GetName() string

func (*Dataset) GetProjectId 

func (x *Dataset) GetProjectId() string

func (*Dataset) ProtoMessage 

func (*Dataset) ProtoMessage()

func (*Dataset) ProtoReflect 

func (x *Dataset) ProtoReflect() protoreflect.Message

func (*Dataset) Reset 

func (x *Dataset) Reset()

func (*Dataset) String 

func (x *Dataset) String() string

type DatasetServiceV1Client 

type DatasetServiceV1Client interface {
	// Lists datasets within a project.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	ListDatasets(ctx context.Context, in *ListDatasetsRequest, opts ...grpc.CallOption) (*ListDatasetsResponse, error)
	// Creates a new dataset.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	CreateDataset(ctx context.Context, in *CreateDatasetRequest, opts ...grpc.CallOption) (*Dataset, error)
	// Gets a dataset by ID.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	GetDataset(ctx context.Context, in *GetDatasetRequest, opts ...grpc.CallOption) (*Dataset, error)
	// Updates a dataset.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// This method supports patch semantics.
	UpdateDataset(ctx context.Context, in *UpdateDatasetRequest, opts ...grpc.CallOption) (*Dataset, error)
	// Deletes a dataset and all of its contents (all read group sets,
	// reference sets, variant sets, call sets, annotation sets, etc.)
	// This is reversible (up to one week after the deletion) via
	// the
	// [datasets.undelete][google.genomics.v1.DatasetServiceV1.UndeleteDataset]
	// operation.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	DeleteDataset(ctx context.Context, in *DeleteDatasetRequest, opts ...grpc.CallOption) (*emptypb.Empty, error)
	// Undeletes a dataset by restoring a dataset which was deleted via this API.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// This operation is only possible for a week after the deletion occurred.
	UndeleteDataset(ctx context.Context, in *UndeleteDatasetRequest, opts ...grpc.CallOption) (*Dataset, error)
	// Sets the access control policy on the specified dataset. Replaces any
	// existing policy.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// See <a href="/iam/docs/managing-policies#setting_a_policy">Setting a
	// Policy</a> for more information.
	SetIamPolicy(ctx context.Context, in *v1.SetIamPolicyRequest, opts ...grpc.CallOption) (*v1.Policy, error)
	// Gets the access control policy for the dataset. This is empty if the
	// policy or resource does not exist.
	//
	// See <a href="/iam/docs/managing-policies#getting_a_policy">Getting a
	// Policy</a> for more information.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	GetIamPolicy(ctx context.Context, in *v1.GetIamPolicyRequest, opts ...grpc.CallOption) (*v1.Policy, error)
	// Returns permissions that a caller has on the specified resource.
	// See <a href="/iam/docs/managing-policies#testing_permissions">Testing
	// Permissions</a> for more information.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	TestIamPermissions(ctx context.Context, in *v1.TestIamPermissionsRequest, opts ...grpc.CallOption) (*v1.TestIamPermissionsResponse, error)
}

DatasetServiceV1Client is the client API for DatasetServiceV1 service.

For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.

func NewDatasetServiceV1Client 

func NewDatasetServiceV1Client(cc grpc.ClientConnInterface) DatasetServiceV1Client

type DatasetServiceV1Server 

type DatasetServiceV1Server interface {
	// Lists datasets within a project.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	ListDatasets(context.Context, *ListDatasetsRequest) (*ListDatasetsResponse, error)
	// Creates a new dataset.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	CreateDataset(context.Context, *CreateDatasetRequest) (*Dataset, error)
	// Gets a dataset by ID.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	GetDataset(context.Context, *GetDatasetRequest) (*Dataset, error)
	// Updates a dataset.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// This method supports patch semantics.
	UpdateDataset(context.Context, *UpdateDatasetRequest) (*Dataset, error)
	// Deletes a dataset and all of its contents (all read group sets,
	// reference sets, variant sets, call sets, annotation sets, etc.)
	// This is reversible (up to one week after the deletion) via
	// the
	// [datasets.undelete][google.genomics.v1.DatasetServiceV1.UndeleteDataset]
	// operation.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	DeleteDataset(context.Context, *DeleteDatasetRequest) (*emptypb.Empty, error)
	// Undeletes a dataset by restoring a dataset which was deleted via this API.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// This operation is only possible for a week after the deletion occurred.
	UndeleteDataset(context.Context, *UndeleteDatasetRequest) (*Dataset, error)
	// Sets the access control policy on the specified dataset. Replaces any
	// existing policy.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	//
	// See <a href="/iam/docs/managing-policies#setting_a_policy">Setting a
	// Policy</a> for more information.
	SetIamPolicy(context.Context, *v1.SetIamPolicyRequest) (*v1.Policy, error)
	// Gets the access control policy for the dataset. This is empty if the
	// policy or resource does not exist.
	//
	// See <a href="/iam/docs/managing-policies#getting_a_policy">Getting a
	// Policy</a> for more information.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	GetIamPolicy(context.Context, *v1.GetIamPolicyRequest) (*v1.Policy, error)
	// Returns permissions that a caller has on the specified resource.
	// See <a href="/iam/docs/managing-policies#testing_permissions">Testing
	// Permissions</a> for more information.
	//
	// For the definitions of datasets and other genomics resources, see
	// [Fundamentals of Google
	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	TestIamPermissions(context.Context, *v1.TestIamPermissionsRequest) (*v1.TestIamPermissionsResponse, error)
}

DatasetServiceV1Server is the server API for DatasetServiceV1 service.

type DeleteAnnotationRequest 

type DeleteAnnotationRequest struct {

	// The ID of the annotation to be deleted.
	AnnotationId string `protobuf:"bytes,1,opt,name=annotation_id,json=annotationId,proto3" json:"annotation_id,omitempty"`
	// contains filtered or unexported fields
}

func (*DeleteAnnotationRequest) Descriptor 

func (*DeleteAnnotationRequest) Descriptor() ([]byte, []int)

Deprecated: Use DeleteAnnotationRequest.ProtoReflect.Descriptor instead.

func (*DeleteAnnotationRequest) GetAnnotationId 

func (x *DeleteAnnotationRequest) GetAnnotationId() string

func (*DeleteAnnotationRequest) ProtoMessage 

func (*DeleteAnnotationRequest) ProtoMessage()

func (*DeleteAnnotationRequest) ProtoReflect 

func (x *DeleteAnnotationRequest) ProtoReflect() protoreflect.Message

func (*DeleteAnnotationRequest) Reset 

func (x *DeleteAnnotationRequest) Reset()

func (*DeleteAnnotationRequest) String 

func (x *DeleteAnnotationRequest) String() string

type DeleteAnnotationSetRequest 

type DeleteAnnotationSetRequest struct {

	// The ID of the annotation set to be deleted.
	AnnotationSetId string `protobuf:"bytes,1,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
	// contains filtered or unexported fields
}

func (*DeleteAnnotationSetRequest) Descriptor 

func (*DeleteAnnotationSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use DeleteAnnotationSetRequest.ProtoReflect.Descriptor instead.

func (*DeleteAnnotationSetRequest) GetAnnotationSetId 

func (x *DeleteAnnotationSetRequest) GetAnnotationSetId() string

func (*DeleteAnnotationSetRequest) ProtoMessage 

func (*DeleteAnnotationSetRequest) ProtoMessage()

func (*DeleteAnnotationSetRequest) ProtoReflect 

func (x *DeleteAnnotationSetRequest) ProtoReflect() protoreflect.Message

func (*DeleteAnnotationSetRequest) Reset 

func (x *DeleteAnnotationSetRequest) Reset()

func (*DeleteAnnotationSetRequest) String 

func (x *DeleteAnnotationSetRequest) String() string

type DeleteCallSetRequest 

type DeleteCallSetRequest struct {

	// The ID of the call set to be deleted.
	CallSetId string `protobuf:"bytes,1,opt,name=call_set_id,json=callSetId,proto3" json:"call_set_id,omitempty"`
	// contains filtered or unexported fields
}

func (*DeleteCallSetRequest) Descriptor 

func (*DeleteCallSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use DeleteCallSetRequest.ProtoReflect.Descriptor instead.

func (*DeleteCallSetRequest) GetCallSetId 

func (x *DeleteCallSetRequest) GetCallSetId() string

func (*DeleteCallSetRequest) ProtoMessage 

func (*DeleteCallSetRequest) ProtoMessage()

func (*DeleteCallSetRequest) ProtoReflect 

func (x *DeleteCallSetRequest) ProtoReflect() protoreflect.Message

func (*DeleteCallSetRequest) Reset 

func (x *DeleteCallSetRequest) Reset()

func (*DeleteCallSetRequest) String 

func (x *DeleteCallSetRequest) String() string

type DeleteDatasetRequest 

type DeleteDatasetRequest struct {

	// The ID of the dataset to be deleted.
	DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
	// contains filtered or unexported fields
}

func (*DeleteDatasetRequest) Descriptor 

func (*DeleteDatasetRequest) Descriptor() ([]byte, []int)

Deprecated: Use DeleteDatasetRequest.ProtoReflect.Descriptor instead.

func (*DeleteDatasetRequest) GetDatasetId 

func (x *DeleteDatasetRequest) GetDatasetId() string

func (*DeleteDatasetRequest) ProtoMessage 

func (*DeleteDatasetRequest) ProtoMessage()

func (*DeleteDatasetRequest) ProtoReflect 

func (x *DeleteDatasetRequest) ProtoReflect() protoreflect.Message

func (*DeleteDatasetRequest) Reset 

func (x *DeleteDatasetRequest) Reset()

func (*DeleteDatasetRequest) String 

func (x *DeleteDatasetRequest) String() string

type DeleteReadGroupSetRequest 

type DeleteReadGroupSetRequest struct {

	// The ID of the read group set to be deleted. The caller must have WRITE
	// permissions to the dataset associated with this read group set.
	ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
	// contains filtered or unexported fields
}

func (*DeleteReadGroupSetRequest) Descriptor 

func (*DeleteReadGroupSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use DeleteReadGroupSetRequest.ProtoReflect.Descriptor instead.

func (*DeleteReadGroupSetRequest) GetReadGroupSetId 

func (x *DeleteReadGroupSetRequest) GetReadGroupSetId() string

func (*DeleteReadGroupSetRequest) ProtoMessage 

func (*DeleteReadGroupSetRequest) ProtoMessage()

func (*DeleteReadGroupSetRequest) ProtoReflect 

func (x *DeleteReadGroupSetRequest) ProtoReflect() protoreflect.Message

func (*DeleteReadGroupSetRequest) Reset 

func (x *DeleteReadGroupSetRequest) Reset()

func (*DeleteReadGroupSetRequest) String 

func (x *DeleteReadGroupSetRequest) String() string

type DeleteVariantRequest 

type DeleteVariantRequest struct {

	// The ID of the variant to be deleted.
	VariantId string `protobuf:"bytes,1,opt,name=variant_id,json=variantId,proto3" json:"variant_id,omitempty"`
	// contains filtered or unexported fields
}

func (*DeleteVariantRequest) Descriptor 

func (*DeleteVariantRequest) Descriptor() ([]byte, []int)

Deprecated: Use DeleteVariantRequest.ProtoReflect.Descriptor instead.

func (*DeleteVariantRequest) GetVariantId 

func (x *DeleteVariantRequest) GetVariantId() string

func (*DeleteVariantRequest) ProtoMessage 

func (*DeleteVariantRequest) ProtoMessage()

func (*DeleteVariantRequest) ProtoReflect 

func (x *DeleteVariantRequest) ProtoReflect() protoreflect.Message

func (*DeleteVariantRequest) Reset 

func (x *DeleteVariantRequest) Reset()

func (*DeleteVariantRequest) String 

func (x *DeleteVariantRequest) String() string

type DeleteVariantSetRequest 

type DeleteVariantSetRequest struct {

	// The ID of the variant set to be deleted.
	VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
	// contains filtered or unexported fields
}

The delete variant set request.

func (*DeleteVariantSetRequest) Descriptor 

func (*DeleteVariantSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use DeleteVariantSetRequest.ProtoReflect.Descriptor instead.

func (*DeleteVariantSetRequest) GetVariantSetId 

func (x *DeleteVariantSetRequest) GetVariantSetId() string

func (*DeleteVariantSetRequest) ProtoMessage 

func (*DeleteVariantSetRequest) ProtoMessage()

func (*DeleteVariantSetRequest) ProtoReflect 

func (x *DeleteVariantSetRequest) ProtoReflect() protoreflect.Message

func (*DeleteVariantSetRequest) Reset 

func (x *DeleteVariantSetRequest) Reset()

func (*DeleteVariantSetRequest) String 

func (x *DeleteVariantSetRequest) String() string

type ExportReadGroupSetRequest 

type ExportReadGroupSetRequest struct {

	// Required. The Google Cloud project ID that owns this
	// export. The caller must have WRITE access to this project.
	ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
	// Required. A Google Cloud Storage URI for the exported BAM file.
	// The currently authenticated user must have write access to the new file.
	// An error will be returned if the URI already contains data.
	ExportUri string `protobuf:"bytes,2,opt,name=export_uri,json=exportUri,proto3" json:"export_uri,omitempty"`
	// Required. The ID of the read group set to export. The caller must have
	// READ access to this read group set.
	ReadGroupSetId string `protobuf:"bytes,3,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
	// The reference names to export. If this is not specified, all reference
	// sequences, including unmapped reads, are exported.
	// Use `*` to export only unmapped reads.
	ReferenceNames []string `protobuf:"bytes,4,rep,name=reference_names,json=referenceNames,proto3" json:"reference_names,omitempty"`
	// contains filtered or unexported fields
}

The read group set export request.

func (*ExportReadGroupSetRequest) Descriptor 

func (*ExportReadGroupSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use ExportReadGroupSetRequest.ProtoReflect.Descriptor instead.

func (*ExportReadGroupSetRequest) GetExportUri 

func (x *ExportReadGroupSetRequest) GetExportUri() string

func (*ExportReadGroupSetRequest) GetProjectId 

func (x *ExportReadGroupSetRequest) GetProjectId() string

func (*ExportReadGroupSetRequest) GetReadGroupSetId 

func (x *ExportReadGroupSetRequest) GetReadGroupSetId() string

func (*ExportReadGroupSetRequest) GetReferenceNames 

func (x *ExportReadGroupSetRequest) GetReferenceNames() []string

func (*ExportReadGroupSetRequest) ProtoMessage 

func (*ExportReadGroupSetRequest) ProtoMessage()

func (*ExportReadGroupSetRequest) ProtoReflect 

func (x *ExportReadGroupSetRequest) ProtoReflect() protoreflect.Message

func (*ExportReadGroupSetRequest) Reset 

func (x *ExportReadGroupSetRequest) Reset()

func (*ExportReadGroupSetRequest) String 

func (x *ExportReadGroupSetRequest) String() string

type ExportVariantSetRequest 

type ExportVariantSetRequest struct {

	// Required. The ID of the variant set that contains variant data which
	// should be exported. The caller must have READ access to this variant set.
	VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
	// If provided, only variant call information from the specified call sets
	// will be exported. By default all variant calls are exported.
	CallSetIds []string `protobuf:"bytes,2,rep,name=call_set_ids,json=callSetIds,proto3" json:"call_set_ids,omitempty"`
	// Required. The Google Cloud project ID that owns the destination
	// BigQuery dataset. The caller must have WRITE access to this project.  This
	// project will also own the resulting export job.
	ProjectId string `protobuf:"bytes,3,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
	// The format for the exported data.
	Format ExportVariantSetRequest_Format `protobuf:"varint,4,opt,name=format,proto3,enum=google.genomics.v1.ExportVariantSetRequest_Format" json:"format,omitempty"`
	// Required. The BigQuery dataset to export data to. This dataset must already
	// exist. Note that this is distinct from the Genomics concept of "dataset".
	BigqueryDataset string `protobuf:"bytes,5,opt,name=bigquery_dataset,json=bigqueryDataset,proto3" json:"bigquery_dataset,omitempty"`
	// Required. The BigQuery table to export data to.
	// If the table doesn't exist, it will be created. If it already exists, it
	// will be overwritten.
	BigqueryTable string `protobuf:"bytes,6,opt,name=bigquery_table,json=bigqueryTable,proto3" json:"bigquery_table,omitempty"`
	// contains filtered or unexported fields
}

The variant data export request.

func (*ExportVariantSetRequest) Descriptor 

func (*ExportVariantSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use ExportVariantSetRequest.ProtoReflect.Descriptor instead.

func (*ExportVariantSetRequest) GetBigqueryDataset 

func (x *ExportVariantSetRequest) GetBigqueryDataset() string

func (*ExportVariantSetRequest) GetBigqueryTable 

func (x *ExportVariantSetRequest) GetBigqueryTable() string

func (*ExportVariantSetRequest) GetCallSetIds 

func (x *ExportVariantSetRequest) GetCallSetIds() []string

func (*ExportVariantSetRequest) GetFormat 

func (x *ExportVariantSetRequest) GetFormat() ExportVariantSetRequest_Format

func (*ExportVariantSetRequest) GetProjectId 

func (x *ExportVariantSetRequest) GetProjectId() string

func (*ExportVariantSetRequest) GetVariantSetId 

func (x *ExportVariantSetRequest) GetVariantSetId() string

func (*ExportVariantSetRequest) ProtoMessage 

func (*ExportVariantSetRequest) ProtoMessage()

func (*ExportVariantSetRequest) ProtoReflect 

func (x *ExportVariantSetRequest) ProtoReflect() protoreflect.Message

func (*ExportVariantSetRequest) Reset 

func (x *ExportVariantSetRequest) Reset()

func (*ExportVariantSetRequest) String 

func (x *ExportVariantSetRequest) String() string

type ExportVariantSetRequest_Format 

type ExportVariantSetRequest_Format int32
const (
	ExportVariantSetRequest_FORMAT_UNSPECIFIED ExportVariantSetRequest_Format = 0
	// Export the data to Google BigQuery.
	ExportVariantSetRequest_FORMAT_BIGQUERY ExportVariantSetRequest_Format = 1
)

func (ExportVariantSetRequest_Format) Descriptor 

func (ExportVariantSetRequest_Format) Descriptor() protoreflect.EnumDescriptor

func (ExportVariantSetRequest_Format) Enum 

func (x ExportVariantSetRequest_Format) Enum() *ExportVariantSetRequest_Format

func (ExportVariantSetRequest_Format) EnumDescriptor 

func (ExportVariantSetRequest_Format) EnumDescriptor() ([]byte, []int)

Deprecated: Use ExportVariantSetRequest_Format.Descriptor instead.

func (ExportVariantSetRequest_Format) Number 

func (x ExportVariantSetRequest_Format) Number() protoreflect.EnumNumber

func (ExportVariantSetRequest_Format) String 

func (x ExportVariantSetRequest_Format) String() string

func (ExportVariantSetRequest_Format) Type 

func (ExportVariantSetRequest_Format) Type() protoreflect.EnumType

type ExternalId 

type ExternalId struct {

	// The name of the source of this data.
	SourceName string `protobuf:"bytes,1,opt,name=source_name,json=sourceName,proto3" json:"source_name,omitempty"`
	// The id used by the source of this data.
	Id string `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
	// contains filtered or unexported fields
}

func (*ExternalId) Descriptor 

func (*ExternalId) Descriptor() ([]byte, []int)

Deprecated: Use ExternalId.ProtoReflect.Descriptor instead.

func (*ExternalId) GetId 

func (x *ExternalId) GetId() string

func (*ExternalId) GetSourceName 

func (x *ExternalId) GetSourceName() string

func (*ExternalId) ProtoMessage 

func (*ExternalId) ProtoMessage()

func (*ExternalId) ProtoReflect 

func (x *ExternalId) ProtoReflect() protoreflect.Message

func (*ExternalId) Reset 

func (x *ExternalId) Reset()

func (*ExternalId) String 

func (x *ExternalId) String() string

type GetAnnotationRequest 

type GetAnnotationRequest struct {

	// The ID of the annotation to be retrieved.
	AnnotationId string `protobuf:"bytes,1,opt,name=annotation_id,json=annotationId,proto3" json:"annotation_id,omitempty"`
	// contains filtered or unexported fields
}

func (*GetAnnotationRequest) Descriptor 

func (*GetAnnotationRequest) Descriptor() ([]byte, []int)

Deprecated: Use GetAnnotationRequest.ProtoReflect.Descriptor instead.

func (*GetAnnotationRequest) GetAnnotationId 

func (x *GetAnnotationRequest) GetAnnotationId() string

func (*GetAnnotationRequest) ProtoMessage 

func (*GetAnnotationRequest) ProtoMessage()

func (*GetAnnotationRequest) ProtoReflect 

func (x *GetAnnotationRequest) ProtoReflect() protoreflect.Message

func (*GetAnnotationRequest) Reset 

func (x *GetAnnotationRequest) Reset()

func (*GetAnnotationRequest) String 

func (x *GetAnnotationRequest) String() string

type GetAnnotationSetRequest 

type GetAnnotationSetRequest struct {

	// The ID of the annotation set to be retrieved.
	AnnotationSetId string `protobuf:"bytes,1,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
	// contains filtered or unexported fields
}

func (*GetAnnotationSetRequest) Descriptor 

func (*GetAnnotationSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use GetAnnotationSetRequest.ProtoReflect.Descriptor instead.

func (*GetAnnotationSetRequest) GetAnnotationSetId 

func (x *GetAnnotationSetRequest) GetAnnotationSetId() string

func (*GetAnnotationSetRequest) ProtoMessage 

func (*GetAnnotationSetRequest) ProtoMessage()

func (*GetAnnotationSetRequest) ProtoReflect 

func (x *GetAnnotationSetRequest) ProtoReflect() protoreflect.Message

func (*GetAnnotationSetRequest) Reset 

func (x *GetAnnotationSetRequest) Reset()

func (*GetAnnotationSetRequest) String 

func (x *GetAnnotationSetRequest) String() string

type GetCallSetRequest 

type GetCallSetRequest struct {

	// The ID of the call set.
	CallSetId string `protobuf:"bytes,1,opt,name=call_set_id,json=callSetId,proto3" json:"call_set_id,omitempty"`
	// contains filtered or unexported fields
}

func (*GetCallSetRequest) Descriptor 

func (*GetCallSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use GetCallSetRequest.ProtoReflect.Descriptor instead.

func (*GetCallSetRequest) GetCallSetId 

func (x *GetCallSetRequest) GetCallSetId() string

func (*GetCallSetRequest) ProtoMessage 

func (*GetCallSetRequest) ProtoMessage()

func (*GetCallSetRequest) ProtoReflect 

func (x *GetCallSetRequest) ProtoReflect() protoreflect.Message

func (*GetCallSetRequest) Reset 

func (x *GetCallSetRequest) Reset()

func (*GetCallSetRequest) String 

func (x *GetCallSetRequest) String() string

type GetDatasetRequest 

type GetDatasetRequest struct {

	// The ID of the dataset.
	DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
	// contains filtered or unexported fields
}

func (*GetDatasetRequest) Descriptor 

func (*GetDatasetRequest) Descriptor() ([]byte, []int)

Deprecated: Use GetDatasetRequest.ProtoReflect.Descriptor instead.

func (*GetDatasetRequest) GetDatasetId 

func (x *GetDatasetRequest) GetDatasetId() string

func (*GetDatasetRequest) ProtoMessage 

func (*GetDatasetRequest) ProtoMessage()

func (*GetDatasetRequest) ProtoReflect 

func (x *GetDatasetRequest) ProtoReflect() protoreflect.Message

func (*GetDatasetRequest) Reset 

func (x *GetDatasetRequest) Reset()

func (*GetDatasetRequest) String 

func (x *GetDatasetRequest) String() string

type GetReadGroupSetRequest 

type GetReadGroupSetRequest struct {

	// The ID of the read group set.
	ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
	// contains filtered or unexported fields
}

func (*GetReadGroupSetRequest) Descriptor 

func (*GetReadGroupSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use GetReadGroupSetRequest.ProtoReflect.Descriptor instead.

func (*GetReadGroupSetRequest) GetReadGroupSetId 

func (x *GetReadGroupSetRequest) GetReadGroupSetId() string

func (*GetReadGroupSetRequest) ProtoMessage 

func (*GetReadGroupSetRequest) ProtoMessage()

func (*GetReadGroupSetRequest) ProtoReflect 

func (x *GetReadGroupSetRequest) ProtoReflect() protoreflect.Message

func (*GetReadGroupSetRequest) Reset 

func (x *GetReadGroupSetRequest) Reset()

func (*GetReadGroupSetRequest) String 

func (x *GetReadGroupSetRequest) String() string

type GetReferenceRequest 

type GetReferenceRequest struct {

	// The ID of the reference.
	ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
	// contains filtered or unexported fields
}

func (*GetReferenceRequest) Descriptor 

func (*GetReferenceRequest) Descriptor() ([]byte, []int)

Deprecated: Use GetReferenceRequest.ProtoReflect.Descriptor instead.

func (*GetReferenceRequest) GetReferenceId 

func (x *GetReferenceRequest) GetReferenceId() string

func (*GetReferenceRequest) ProtoMessage 

func (*GetReferenceRequest) ProtoMessage()

func (*GetReferenceRequest) ProtoReflect 

func (x *GetReferenceRequest) ProtoReflect() protoreflect.Message

func (*GetReferenceRequest) Reset 

func (x *GetReferenceRequest) Reset()

func (*GetReferenceRequest) String 

func (x *GetReferenceRequest) String() string

type GetReferenceSetRequest 

type GetReferenceSetRequest struct {

	// The ID of the reference set.
	ReferenceSetId string `protobuf:"bytes,1,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
	// contains filtered or unexported fields
}

func (*GetReferenceSetRequest) Descriptor 

func (*GetReferenceSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use GetReferenceSetRequest.ProtoReflect.Descriptor instead.

func (*GetReferenceSetRequest) GetReferenceSetId 

func (x *GetReferenceSetRequest) GetReferenceSetId() string

func (*GetReferenceSetRequest) ProtoMessage 

func (*GetReferenceSetRequest) ProtoMessage()

func (*GetReferenceSetRequest) ProtoReflect 

func (x *GetReferenceSetRequest) ProtoReflect() protoreflect.Message

func (*GetReferenceSetRequest) Reset 

func (x *GetReferenceSetRequest) Reset()

func (*GetReferenceSetRequest) String 

func (x *GetReferenceSetRequest) String() string

type GetVariantRequest 

type GetVariantRequest struct {

	// The ID of the variant.
	VariantId string `protobuf:"bytes,1,opt,name=variant_id,json=variantId,proto3" json:"variant_id,omitempty"`
	// contains filtered or unexported fields
}

func (*GetVariantRequest) Descriptor 

func (*GetVariantRequest) Descriptor() ([]byte, []int)

Deprecated: Use GetVariantRequest.ProtoReflect.Descriptor instead.

func (*GetVariantRequest) GetVariantId 

func (x *GetVariantRequest) GetVariantId() string

func (*GetVariantRequest) ProtoMessage 

func (*GetVariantRequest) ProtoMessage()

func (*GetVariantRequest) ProtoReflect 

func (x *GetVariantRequest) ProtoReflect() protoreflect.Message

func (*GetVariantRequest) Reset 

func (x *GetVariantRequest) Reset()

func (*GetVariantRequest) String 

func (x *GetVariantRequest) String() string

type GetVariantSetRequest 

type GetVariantSetRequest struct {

	// Required. The ID of the variant set.
	VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
	// contains filtered or unexported fields
}

The variant set request.

func (*GetVariantSetRequest) Descriptor 

func (*GetVariantSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use GetVariantSetRequest.ProtoReflect.Descriptor instead.

func (*GetVariantSetRequest) GetVariantSetId 

func (x *GetVariantSetRequest) GetVariantSetId() string

func (*GetVariantSetRequest) ProtoMessage 

func (*GetVariantSetRequest) ProtoMessage()

func (*GetVariantSetRequest) ProtoReflect 

func (x *GetVariantSetRequest) ProtoReflect() protoreflect.Message

func (*GetVariantSetRequest) Reset 

func (x *GetVariantSetRequest) Reset()

func (*GetVariantSetRequest) String 

func (x *GetVariantSetRequest) String() string

type ImportReadGroupSetsRequest 

type ImportReadGroupSetsRequest struct {

	// Required. The ID of the dataset these read group sets will belong to. The
	// caller must have WRITE permissions to this dataset.
	DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
	// The reference set to which the imported read group sets are aligned to, if
	// any. The reference names of this reference set must be a superset of those
	// found in the imported file headers. If no reference set id is provided, a
	// best effort is made to associate with a matching reference set.
	ReferenceSetId string `protobuf:"bytes,4,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
	// A list of URIs pointing at [BAM
	// files](https://samtools.github.io/hts-specs/SAMv1.pdf)
	// in Google Cloud Storage.
	// Those URIs can include wildcards (*), but do not add or remove
	// matching files before import has completed.
	//
	// Note that Google Cloud Storage object listing is only eventually
	// consistent: files added may be not be immediately visible to
	// everyone. Thus, if using a wildcard it is preferable not to start
	// the import immediately after the files are created.
	SourceUris []string `protobuf:"bytes,2,rep,name=source_uris,json=sourceUris,proto3" json:"source_uris,omitempty"`
	// The partition strategy describes how read groups are partitioned into read
	// group sets.
	PartitionStrategy ImportReadGroupSetsRequest_PartitionStrategy `` /* 182-byte string literal not displayed */
	// contains filtered or unexported fields
}

The read group set import request.

func (*ImportReadGroupSetsRequest) Descriptor 

func (*ImportReadGroupSetsRequest) Descriptor() ([]byte, []int)

Deprecated: Use ImportReadGroupSetsRequest.ProtoReflect.Descriptor instead.

func (*ImportReadGroupSetsRequest) GetDatasetId 

func (x *ImportReadGroupSetsRequest) GetDatasetId() string

func (*ImportReadGroupSetsRequest) GetPartitionStrategy 

func (x *ImportReadGroupSetsRequest) GetPartitionStrategy() ImportReadGroupSetsRequest_PartitionStrategy

func (*ImportReadGroupSetsRequest) GetReferenceSetId 

func (x *ImportReadGroupSetsRequest) GetReferenceSetId() string

func (*ImportReadGroupSetsRequest) GetSourceUris 

func (x *ImportReadGroupSetsRequest) GetSourceUris() []string

func (*ImportReadGroupSetsRequest) ProtoMessage 

func (*ImportReadGroupSetsRequest) ProtoMessage()

func (*ImportReadGroupSetsRequest) ProtoReflect 

func (x *ImportReadGroupSetsRequest) ProtoReflect() protoreflect.Message

func (*ImportReadGroupSetsRequest) Reset 

func (x *ImportReadGroupSetsRequest) Reset()

func (*ImportReadGroupSetsRequest) String 

func (x *ImportReadGroupSetsRequest) String() string

type ImportReadGroupSetsRequest_PartitionStrategy 

type ImportReadGroupSetsRequest_PartitionStrategy int32
const (
	ImportReadGroupSetsRequest_PARTITION_STRATEGY_UNSPECIFIED ImportReadGroupSetsRequest_PartitionStrategy = 0
	// In most cases, this strategy yields one read group set per file. This is
	// the default behavior.
	//
	// Allocate one read group set per file per sample. For BAM files, read
	// groups are considered to share a sample if they have identical sample
	// names. Furthermore, all reads for each file which do not belong to a read
	// group, if any, will be grouped into a single read group set per-file.
	ImportReadGroupSetsRequest_PER_FILE_PER_SAMPLE ImportReadGroupSetsRequest_PartitionStrategy = 1
	// Includes all read groups in all imported files into a single read group
	// set. Requires that the headers for all imported files are equivalent. All
	// reads which do not belong to a read group, if any, will be grouped into a
	// separate read group set.
	ImportReadGroupSetsRequest_MERGE_ALL ImportReadGroupSetsRequest_PartitionStrategy = 2
)

func (ImportReadGroupSetsRequest_PartitionStrategy) Descriptor 

func (ImportReadGroupSetsRequest_PartitionStrategy) Descriptor() protoreflect.EnumDescriptor

func (ImportReadGroupSetsRequest_PartitionStrategy) Enum 

func (x ImportReadGroupSetsRequest_PartitionStrategy) Enum() *ImportReadGroupSetsRequest_PartitionStrategy

func (ImportReadGroupSetsRequest_PartitionStrategy) EnumDescriptor 

func (ImportReadGroupSetsRequest_PartitionStrategy) EnumDescriptor() ([]byte, []int)

Deprecated: Use ImportReadGroupSetsRequest_PartitionStrategy.Descriptor instead.

func (ImportReadGroupSetsRequest_PartitionStrategy) Number 

func (x ImportReadGroupSetsRequest_PartitionStrategy) Number() protoreflect.EnumNumber

func (ImportReadGroupSetsRequest_PartitionStrategy) String 

func (x ImportReadGroupSetsRequest_PartitionStrategy) String() string

func (ImportReadGroupSetsRequest_PartitionStrategy) Type 

func (ImportReadGroupSetsRequest_PartitionStrategy) Type() protoreflect.EnumType

type ImportReadGroupSetsResponse 

type ImportReadGroupSetsResponse struct {

	// IDs of the read group sets that were created.
	ReadGroupSetIds []string `protobuf:"bytes,1,rep,name=read_group_set_ids,json=readGroupSetIds,proto3" json:"read_group_set_ids,omitempty"`
	// contains filtered or unexported fields
}

The read group set import response.

func (*ImportReadGroupSetsResponse) Descriptor 

func (*ImportReadGroupSetsResponse) Descriptor() ([]byte, []int)

Deprecated: Use ImportReadGroupSetsResponse.ProtoReflect.Descriptor instead.

func (*ImportReadGroupSetsResponse) GetReadGroupSetIds 

func (x *ImportReadGroupSetsResponse) GetReadGroupSetIds() []string

func (*ImportReadGroupSetsResponse) ProtoMessage 

func (*ImportReadGroupSetsResponse) ProtoMessage()

func (*ImportReadGroupSetsResponse) ProtoReflect 

func (x *ImportReadGroupSetsResponse) ProtoReflect() protoreflect.Message

func (*ImportReadGroupSetsResponse) Reset 

func (x *ImportReadGroupSetsResponse) Reset()

func (*ImportReadGroupSetsResponse) String 

func (x *ImportReadGroupSetsResponse) String() string

type ImportVariantsRequest 

type ImportVariantsRequest struct {

	// Required. The variant set to which variant data should be imported.
	VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
	// A list of URIs referencing variant files in Google Cloud Storage. URIs can
	// include wildcards [as described
	// here](https://cloud.google.com/storage/docs/gsutil/addlhelp/WildcardNames).
	// Note that recursive wildcards ('**') are not supported.
	SourceUris []string `protobuf:"bytes,2,rep,name=source_uris,json=sourceUris,proto3" json:"source_uris,omitempty"`
	// The format of the variant data being imported. If unspecified, defaults to
	// to `VCF`.
	Format ImportVariantsRequest_Format `protobuf:"varint,3,opt,name=format,proto3,enum=google.genomics.v1.ImportVariantsRequest_Format" json:"format,omitempty"`
	// Convert reference names to the canonical representation.
	// hg19 haploytypes (those reference names containing "_hap")
	// are not modified in any way.
	// All other reference names are modified according to the following rules:
	// The reference name is capitalized.
	// The "chr" prefix is dropped for all autosomes and sex chromsomes.
	// For example "chr17" becomes "17" and "chrX" becomes "X".
	// All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
	NormalizeReferenceNames bool `` /* 133-byte string literal not displayed */
	// A mapping between info field keys and the InfoMergeOperations to
	// be performed on them. This is plumbed down to the MergeVariantRequests
	// generated by the resulting import job.
	InfoMergeConfig map[string]InfoMergeOperation `` /* 240-byte string literal not displayed */
	// contains filtered or unexported fields
}

The variant data import request.

func (*ImportVariantsRequest) Descriptor 

func (*ImportVariantsRequest) Descriptor() ([]byte, []int)

Deprecated: Use ImportVariantsRequest.ProtoReflect.Descriptor instead.

func (*ImportVariantsRequest) GetFormat 

func (x *ImportVariantsRequest) GetFormat() ImportVariantsRequest_Format

func (*ImportVariantsRequest) GetInfoMergeConfig 

func (x *ImportVariantsRequest) GetInfoMergeConfig() map[string]InfoMergeOperation

func (*ImportVariantsRequest) GetNormalizeReferenceNames 

func (x *ImportVariantsRequest) GetNormalizeReferenceNames() bool

func (*ImportVariantsRequest) GetSourceUris 

func (x *ImportVariantsRequest) GetSourceUris() []string

func (*ImportVariantsRequest) GetVariantSetId 

func (x *ImportVariantsRequest) GetVariantSetId() string

func (*ImportVariantsRequest) ProtoMessage 

func (*ImportVariantsRequest) ProtoMessage()

func (*ImportVariantsRequest) ProtoReflect 

func (x *ImportVariantsRequest) ProtoReflect() protoreflect.Message

func (*ImportVariantsRequest) Reset 

func (x *ImportVariantsRequest) Reset()

func (*ImportVariantsRequest) String 

func (x *ImportVariantsRequest) String() string

type ImportVariantsRequest_Format 

type ImportVariantsRequest_Format int32
const (
	ImportVariantsRequest_FORMAT_UNSPECIFIED ImportVariantsRequest_Format = 0
	// VCF (Variant Call Format). The VCF files may be gzip compressed. gVCF is
	// also supported.
	ImportVariantsRequest_FORMAT_VCF ImportVariantsRequest_Format = 1
	// Complete Genomics masterVarBeta format. The masterVarBeta files may
	// be bzip2 compressed.
	ImportVariantsRequest_FORMAT_COMPLETE_GENOMICS ImportVariantsRequest_Format = 2
)

func (ImportVariantsRequest_Format) Descriptor 

func (ImportVariantsRequest_Format) Descriptor() protoreflect.EnumDescriptor

func (ImportVariantsRequest_Format) Enum 

func (x ImportVariantsRequest_Format) Enum() *ImportVariantsRequest_Format

func (ImportVariantsRequest_Format) EnumDescriptor 

func (ImportVariantsRequest_Format) EnumDescriptor() ([]byte, []int)

Deprecated: Use ImportVariantsRequest_Format.Descriptor instead.

func (ImportVariantsRequest_Format) Number 

func (x ImportVariantsRequest_Format) Number() protoreflect.EnumNumber

func (ImportVariantsRequest_Format) String 

func (x ImportVariantsRequest_Format) String() string

func (ImportVariantsRequest_Format) Type 

func (ImportVariantsRequest_Format) Type() protoreflect.EnumType

type ImportVariantsResponse 

type ImportVariantsResponse struct {

	// IDs of the call sets created during the import.
	CallSetIds []string `protobuf:"bytes,1,rep,name=call_set_ids,json=callSetIds,proto3" json:"call_set_ids,omitempty"`
	// contains filtered or unexported fields
}

The variant data import response.

func (*ImportVariantsResponse) Descriptor 

func (*ImportVariantsResponse) Descriptor() ([]byte, []int)

Deprecated: Use ImportVariantsResponse.ProtoReflect.Descriptor instead.

func (*ImportVariantsResponse) GetCallSetIds 

func (x *ImportVariantsResponse) GetCallSetIds() []string

func (*ImportVariantsResponse) ProtoMessage 

func (*ImportVariantsResponse) ProtoMessage()

func (*ImportVariantsResponse) ProtoReflect 

func (x *ImportVariantsResponse) ProtoReflect() protoreflect.Message

func (*ImportVariantsResponse) Reset 

func (x *ImportVariantsResponse) Reset()

func (*ImportVariantsResponse) String 

func (x *ImportVariantsResponse) String() string

type InfoMergeOperation 

type InfoMergeOperation int32

Operations to be performed during import on Variant info fields. These operations are set for each info field in the info_merge_config map of ImportVariantsRequest, which is plumbed down to the MergeVariantRequests generated by the import job. 

const (
	InfoMergeOperation_INFO_MERGE_OPERATION_UNSPECIFIED InfoMergeOperation = 0
	// By default, Variant info fields are persisted if the Variant doesn't
	// already exist in the variantset.  If the Variant is equivalent to a
	// Variant already in the variantset, the incoming Variant's info field
	// is ignored in favor of that of the already persisted Variant.
	InfoMergeOperation_IGNORE_NEW InfoMergeOperation = 1
	// This operation removes an info field from the incoming Variant
	// and persists this info field in each of the incoming Variant's Calls.
	InfoMergeOperation_MOVE_TO_CALLS InfoMergeOperation = 2
)

func (InfoMergeOperation) Descriptor 

func (InfoMergeOperation) Descriptor() protoreflect.EnumDescriptor

func (InfoMergeOperation) Enum 

func (x InfoMergeOperation) Enum() *InfoMergeOperation

func (InfoMergeOperation) EnumDescriptor 

func (InfoMergeOperation) EnumDescriptor() ([]byte, []int)

Deprecated: Use InfoMergeOperation.Descriptor instead.

func (InfoMergeOperation) Number 

func (x InfoMergeOperation) Number() protoreflect.EnumNumber

func (InfoMergeOperation) String 

func (x InfoMergeOperation) String() string

func (InfoMergeOperation) Type 

func (InfoMergeOperation) Type() protoreflect.EnumType

type LinearAlignment 

type LinearAlignment struct {

	// The position of this alignment.
	Position *Position `protobuf:"bytes,1,opt,name=position,proto3" json:"position,omitempty"`
	// The mapping quality of this alignment. Represents how likely
	// the read maps to this position as opposed to other locations.
	//
	// Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to
	// the nearest integer.
	MappingQuality int32 `protobuf:"varint,2,opt,name=mapping_quality,json=mappingQuality,proto3" json:"mapping_quality,omitempty"`
	// Represents the local alignment of this sequence (alignment matches, indels,
	// etc) against the reference.
	Cigar []*CigarUnit `protobuf:"bytes,3,rep,name=cigar,proto3" json:"cigar,omitempty"`
	// contains filtered or unexported fields
}

A linear alignment can be represented by one CIGAR string. Describes the mapped position and local alignment of the read to the reference.

func (*LinearAlignment) Descriptor 

func (*LinearAlignment) Descriptor() ([]byte, []int)

Deprecated: Use LinearAlignment.ProtoReflect.Descriptor instead.

func (*LinearAlignment) GetCigar 

func (x *LinearAlignment) GetCigar() []*CigarUnit

func (*LinearAlignment) GetMappingQuality 

func (x *LinearAlignment) GetMappingQuality() int32

func (*LinearAlignment) GetPosition 

func (x *LinearAlignment) GetPosition() *Position

func (*LinearAlignment) ProtoMessage 

func (*LinearAlignment) ProtoMessage()

func (*LinearAlignment) ProtoReflect 

func (x *LinearAlignment) ProtoReflect() protoreflect.Message

func (*LinearAlignment) Reset 

func (x *LinearAlignment) Reset()

func (*LinearAlignment) String 

func (x *LinearAlignment) String() string

type ListBasesRequest 

type ListBasesRequest struct {

	// The ID of the reference.
	ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
	// The start position (0-based) of this query. Defaults to 0.
	Start int64 `protobuf:"varint,2,opt,name=start,proto3" json:"start,omitempty"`
	// The end position (0-based, exclusive) of this query. Defaults to the length
	// of this reference.
	End int64 `protobuf:"varint,3,opt,name=end,proto3" json:"end,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// To get the next page of results, set this parameter to the value of
	// `nextPageToken` from the previous response.
	PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
	// The maximum number of bases to return in a single page. If unspecified,
	// defaults to 200Kbp (kilo base pairs). The maximum value is 10Mbp (mega base
	// pairs).
	PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
	// contains filtered or unexported fields
}

func (*ListBasesRequest) Descriptor 

func (*ListBasesRequest) Descriptor() ([]byte, []int)

Deprecated: Use ListBasesRequest.ProtoReflect.Descriptor instead.

func (*ListBasesRequest) GetEnd 

func (x *ListBasesRequest) GetEnd() int64

func (*ListBasesRequest) GetPageSize 

func (x *ListBasesRequest) GetPageSize() int32

func (*ListBasesRequest) GetPageToken 

func (x *ListBasesRequest) GetPageToken() string

func (*ListBasesRequest) GetReferenceId 

func (x *ListBasesRequest) GetReferenceId() string

func (*ListBasesRequest) GetStart 

func (x *ListBasesRequest) GetStart() int64

func (*ListBasesRequest) ProtoMessage 

func (*ListBasesRequest) ProtoMessage()

func (*ListBasesRequest) ProtoReflect 

func (x *ListBasesRequest) ProtoReflect() protoreflect.Message

func (*ListBasesRequest) Reset 

func (x *ListBasesRequest) Reset()

func (*ListBasesRequest) String 

func (x *ListBasesRequest) String() string

type ListBasesResponse 

type ListBasesResponse struct {

	// The offset position (0-based) of the given `sequence` from the
	// start of this `Reference`. This value will differ for each page
	// in a paginated request.
	Offset int64 `protobuf:"varint,1,opt,name=offset,proto3" json:"offset,omitempty"`
	// A substring of the bases that make up this reference.
	Sequence string `protobuf:"bytes,2,opt,name=sequence,proto3" json:"sequence,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// Provide this value in a subsequent request to return the next page of
	// results. This field will be empty if there aren't any additional results.
	NextPageToken string `protobuf:"bytes,3,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
	// contains filtered or unexported fields
}

func (*ListBasesResponse) Descriptor 

func (*ListBasesResponse) Descriptor() ([]byte, []int)

Deprecated: Use ListBasesResponse.ProtoReflect.Descriptor instead.

func (*ListBasesResponse) GetNextPageToken 

func (x *ListBasesResponse) GetNextPageToken() string

func (*ListBasesResponse) GetOffset 

func (x *ListBasesResponse) GetOffset() int64

func (*ListBasesResponse) GetSequence 

func (x *ListBasesResponse) GetSequence() string

func (*ListBasesResponse) ProtoMessage 

func (*ListBasesResponse) ProtoMessage()

func (*ListBasesResponse) ProtoReflect 

func (x *ListBasesResponse) ProtoReflect() protoreflect.Message

func (*ListBasesResponse) Reset 

func (x *ListBasesResponse) Reset()

func (*ListBasesResponse) String 

func (x *ListBasesResponse) String() string

type ListCoverageBucketsRequest 

type ListCoverageBucketsRequest struct {

	// Required. The ID of the read group set over which coverage is requested.
	ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
	// The name of the reference to query, within the reference set associated
	// with this query. Optional.
	ReferenceName string `protobuf:"bytes,3,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
	// The start position of the range on the reference, 0-based inclusive. If
	// specified, `referenceName` must also be specified. Defaults to 0.
	Start int64 `protobuf:"varint,4,opt,name=start,proto3" json:"start,omitempty"`
	// The end position of the range on the reference, 0-based exclusive. If
	// specified, `referenceName` must also be specified. If unset or 0, defaults
	// to the length of the reference.
	End int64 `protobuf:"varint,5,opt,name=end,proto3" json:"end,omitempty"`
	// The desired width of each reported coverage bucket in base pairs. This
	// will be rounded down to the nearest precomputed bucket width; the value
	// of which is returned as `bucketWidth` in the response. Defaults
	// to infinity (each bucket spans an entire reference sequence) or the length
	// of the target range, if specified. The smallest precomputed
	// `bucketWidth` is currently 2048 base pairs; this is subject to
	// change.
	TargetBucketWidth int64 `protobuf:"varint,6,opt,name=target_bucket_width,json=targetBucketWidth,proto3" json:"target_bucket_width,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// To get the next page of results, set this parameter to the value of
	// `nextPageToken` from the previous response.
	PageToken string `protobuf:"bytes,7,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
	// The maximum number of results to return in a single page. If unspecified,
	// defaults to 1024. The maximum value is 2048.
	PageSize int32 `protobuf:"varint,8,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
	// contains filtered or unexported fields
}

func (*ListCoverageBucketsRequest) Descriptor 

func (*ListCoverageBucketsRequest) Descriptor() ([]byte, []int)

Deprecated: Use ListCoverageBucketsRequest.ProtoReflect.Descriptor instead.

func (*ListCoverageBucketsRequest) GetEnd 

func (x *ListCoverageBucketsRequest) GetEnd() int64

func (*ListCoverageBucketsRequest) GetPageSize 

func (x *ListCoverageBucketsRequest) GetPageSize() int32

func (*ListCoverageBucketsRequest) GetPageToken 

func (x *ListCoverageBucketsRequest) GetPageToken() string

func (*ListCoverageBucketsRequest) GetReadGroupSetId 

func (x *ListCoverageBucketsRequest) GetReadGroupSetId() string

func (*ListCoverageBucketsRequest) GetReferenceName 

func (x *ListCoverageBucketsRequest) GetReferenceName() string

func (*ListCoverageBucketsRequest) GetStart 

func (x *ListCoverageBucketsRequest) GetStart() int64

func (*ListCoverageBucketsRequest) GetTargetBucketWidth 

func (x *ListCoverageBucketsRequest) GetTargetBucketWidth() int64

func (*ListCoverageBucketsRequest) ProtoMessage 

func (*ListCoverageBucketsRequest) ProtoMessage()

func (*ListCoverageBucketsRequest) ProtoReflect 

func (x *ListCoverageBucketsRequest) ProtoReflect() protoreflect.Message

func (*ListCoverageBucketsRequest) Reset 

func (x *ListCoverageBucketsRequest) Reset()

func (*ListCoverageBucketsRequest) String 

func (x *ListCoverageBucketsRequest) String() string

type ListCoverageBucketsResponse 

type ListCoverageBucketsResponse struct {

	// The length of each coverage bucket in base pairs. Note that buckets at the
	// end of a reference sequence may be shorter. This value is omitted if the
	// bucket width is infinity (the default behaviour, with no range or
	// `targetBucketWidth`).
	BucketWidth int64 `protobuf:"varint,1,opt,name=bucket_width,json=bucketWidth,proto3" json:"bucket_width,omitempty"`
	// The coverage buckets. The list of buckets is sparse; a bucket with 0
	// overlapping reads is not returned. A bucket never crosses more than one
	// reference sequence. Each bucket has width `bucketWidth`, unless
	// its end is the end of the reference sequence.
	CoverageBuckets []*CoverageBucket `protobuf:"bytes,2,rep,name=coverage_buckets,json=coverageBuckets,proto3" json:"coverage_buckets,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// Provide this value in a subsequent request to return the next page of
	// results. This field will be empty if there aren't any additional results.
	NextPageToken string `protobuf:"bytes,3,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
	// contains filtered or unexported fields
}

func (*ListCoverageBucketsResponse) Descriptor 

func (*ListCoverageBucketsResponse) Descriptor() ([]byte, []int)

Deprecated: Use ListCoverageBucketsResponse.ProtoReflect.Descriptor instead.

func (*ListCoverageBucketsResponse) GetBucketWidth 

func (x *ListCoverageBucketsResponse) GetBucketWidth() int64

func (*ListCoverageBucketsResponse) GetCoverageBuckets 

func (x *ListCoverageBucketsResponse) GetCoverageBuckets() []*CoverageBucket

func (*ListCoverageBucketsResponse) GetNextPageToken 

func (x *ListCoverageBucketsResponse) GetNextPageToken() string

func (*ListCoverageBucketsResponse) ProtoMessage 

func (*ListCoverageBucketsResponse) ProtoMessage()

func (*ListCoverageBucketsResponse) ProtoReflect 

func (x *ListCoverageBucketsResponse) ProtoReflect() protoreflect.Message

func (*ListCoverageBucketsResponse) Reset 

func (x *ListCoverageBucketsResponse) Reset()

func (*ListCoverageBucketsResponse) String 

func (x *ListCoverageBucketsResponse) String() string

type ListDatasetsRequest 

type ListDatasetsRequest struct {

	// Required. The Google Cloud project ID to list datasets for.
	ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
	// The maximum number of results to return in a single page. If unspecified,
	// defaults to 50. The maximum value is 1024.
	PageSize int32 `protobuf:"varint,2,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// To get the next page of results, set this parameter to the value of
	// `nextPageToken` from the previous response.
	PageToken string `protobuf:"bytes,3,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
	// contains filtered or unexported fields
}

The dataset list request.

func (*ListDatasetsRequest) Descriptor 

func (*ListDatasetsRequest) Descriptor() ([]byte, []int)

Deprecated: Use ListDatasetsRequest.ProtoReflect.Descriptor instead.

func (*ListDatasetsRequest) GetPageSize 

func (x *ListDatasetsRequest) GetPageSize() int32

func (*ListDatasetsRequest) GetPageToken 

func (x *ListDatasetsRequest) GetPageToken() string

func (*ListDatasetsRequest) GetProjectId 

func (x *ListDatasetsRequest) GetProjectId() string

func (*ListDatasetsRequest) ProtoMessage 

func (*ListDatasetsRequest) ProtoMessage()

func (*ListDatasetsRequest) ProtoReflect 

func (x *ListDatasetsRequest) ProtoReflect() protoreflect.Message

func (*ListDatasetsRequest) Reset 

func (x *ListDatasetsRequest) Reset()

func (*ListDatasetsRequest) String 

func (x *ListDatasetsRequest) String() string

type ListDatasetsResponse 

type ListDatasetsResponse struct {

	// The list of matching Datasets.
	Datasets []*Dataset `protobuf:"bytes,1,rep,name=datasets,proto3" json:"datasets,omitempty"`
	// The continuation token, which is used to page through large result sets.
	// Provide this value in a subsequent request to return the next page of
	// results. This field will be empty if there aren't any additional results.
	NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
	// contains filtered or unexported fields
}

The dataset list response.

func (*ListDatasetsResponse) Descriptor 

func (*ListDatasetsResponse) Descriptor() ([]byte, []int)

Deprecated: Use ListDatasetsResponse.ProtoReflect.Descriptor instead.

func (*ListDatasetsResponse) GetDatasets 

func (x *ListDatasetsResponse) GetDatasets() []*Dataset

func (*ListDatasetsResponse) GetNextPageToken 

func (x *ListDatasetsResponse) GetNextPageToken() string

func (*ListDatasetsResponse) ProtoMessage 

func (*ListDatasetsResponse) ProtoMessage()

func (*ListDatasetsResponse) ProtoReflect 

func (x *ListDatasetsResponse) ProtoReflect() protoreflect.Message

func (*ListDatasetsResponse) Reset 

func (x *ListDatasetsResponse) Reset()

func (*ListDatasetsResponse) String 

func (x *ListDatasetsResponse) String() string

type MergeVariantsRequest 

type MergeVariantsRequest struct {

	// The destination variant set.
	VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
	// The variants to be merged with existing variants.
	Variants []*Variant `protobuf:"bytes,2,rep,name=variants,proto3" json:"variants,omitempty"`
	// A mapping between info field keys and the InfoMergeOperations to
	// be performed on them.
	InfoMergeConfig map[string]InfoMergeOperation `` /* 240-byte string literal not displayed */
	// contains filtered or unexported fields
}

func (*MergeVariantsRequest) Descriptor 

func (*MergeVariantsRequest) Descriptor() ([]byte, []int)

Deprecated: Use MergeVariantsRequest.ProtoReflect.Descriptor instead.

func (*MergeVariantsRequest) GetInfoMergeConfig 

func (x *MergeVariantsRequest) GetInfoMergeConfig() map[string]InfoMergeOperation

func (*MergeVariantsRequest) GetVariantSetId 

func (x *MergeVariantsRequest) GetVariantSetId() string

func (*MergeVariantsRequest) GetVariants 

func (x *MergeVariantsRequest) GetVariants() []*Variant

func (*MergeVariantsRequest) ProtoMessage 

func (*MergeVariantsRequest) ProtoMessage()

func (*MergeVariantsRequest) ProtoReflect 

func (x *MergeVariantsRequest) ProtoReflect() protoreflect.Message

func (*MergeVariantsRequest) Reset 

func (x *MergeVariantsRequest) Reset()

func (*MergeVariantsRequest) String 

func (x *MergeVariantsRequest) String() string

type OperationEvent 

type OperationEvent struct {

	// Optional time of when event started.
	StartTime *timestamppb.Timestamp `protobuf:"bytes,1,opt,name=start_time,json=startTime,proto3" json:"start_time,omitempty"`
	// Optional time of when event finished. An event can have a start time and no
	// finish time. If an event has a finish time, there must be a start time.
	EndTime *timestamppb.Timestamp `protobuf:"bytes,2,opt,name=end_time,json=endTime,proto3" json:"end_time,omitempty"`
	// Required description of event.
	Description string `protobuf:"bytes,3,opt,name=description,proto3" json:"description,omitempty"`
	// contains filtered or unexported fields
}

An event that occurred during an [Operation][google.longrunning.Operation].

func (*OperationEvent) Descriptor 

func (*OperationEvent) Descriptor() ([]byte, []int)

Deprecated: Use OperationEvent.ProtoReflect.Descriptor instead.

func (*OperationEvent) GetDescription 

func (x *OperationEvent) GetDescription() string

func (*OperationEvent) GetEndTime 

func (x *OperationEvent) GetEndTime() *timestamppb.Timestamp

func (*OperationEvent) GetStartTime 

func (x *OperationEvent) GetStartTime() *timestamppb.Timestamp

func (*OperationEvent) ProtoMessage 

func (*OperationEvent) ProtoMessage()

func (*OperationEvent) ProtoReflect 

func (x *OperationEvent) ProtoReflect() protoreflect.Message

func (*OperationEvent) Reset 

func (x *OperationEvent) Reset()

func (*OperationEvent) String 

func (x *OperationEvent) String() string

type OperationMetadata 

type OperationMetadata struct {

	// The Google Cloud Project in which the job is scoped.
	ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
	// The time at which the job was submitted to the Genomics service.
	CreateTime *timestamppb.Timestamp `protobuf:"bytes,2,opt,name=create_time,json=createTime,proto3" json:"create_time,omitempty"`
	// The time at which the job began to run.
	StartTime *timestamppb.Timestamp `protobuf:"bytes,3,opt,name=start_time,json=startTime,proto3" json:"start_time,omitempty"`
	// The time at which the job stopped running.
	EndTime *timestamppb.Timestamp `protobuf:"bytes,4,opt,name=end_time,json=endTime,proto3" json:"end_time,omitempty"`
	// The original request that started the operation. Note that this will be in
	// current version of the API. If the operation was started with v1beta2 API
	// and a GetOperation is performed on v1 API, a v1 request will be returned.
	Request *anypb.Any `protobuf:"bytes,5,opt,name=request,proto3" json:"request,omitempty"`
	// Optional event messages that were generated during the job's execution.
	// This also contains any warnings that were generated during import
	// or export.
	Events []*OperationEvent `protobuf:"bytes,6,rep,name=events,proto3" json:"events,omitempty"`
	// This field is deprecated. Use `labels` instead. Optionally provided by the
	// caller when submitting the request that creates the operation.
	ClientId string `protobuf:"bytes,7,opt,name=client_id,json=clientId,proto3" json:"client_id,omitempty"`
	// Runtime metadata on this Operation.
	RuntimeMetadata *anypb.Any `protobuf:"bytes,8,opt,name=runtime_metadata,json=runtimeMetadata,proto3" json:"runtime_metadata,omitempty"`
	// Optionally provided by the caller when submitting the request that creates
	// the operation.
	Labels map[string]string `` /* 153-byte string literal not displayed */
	// contains filtered or unexported fields
}

Metadata describing an [Operation][google.longrunning.Operation].

func (*OperationMetadata) Descriptor 

func (*OperationMetadata) Descriptor() ([]byte, []int)

Deprecated: Use OperationMetadata.ProtoReflect.Descriptor instead.

func (*OperationMetadata) GetClientId 

func (x *OperationMetadata) GetClientId() string

func (*OperationMetadata) GetCreateTime 

func (x *OperationMetadata) GetCreateTime() *timestamppb.Timestamp

func (*OperationMetadata) GetEndTime 

func (x *OperationMetadata) GetEndTime() *timestamppb.Timestamp

func (*OperationMetadata) GetEvents 

func (x *OperationMetadata) GetEvents() []*OperationEvent

func (*OperationMetadata) GetLabels 

func (x *OperationMetadata) GetLabels() map[string]string

func (*OperationMetadata) GetProjectId 

func (x *OperationMetadata) GetProjectId() string

func (*OperationMetadata) GetRequest 

func (x *OperationMetadata) GetRequest() *anypb.Any

func (*OperationMetadata) GetRuntimeMetadata 

func (x *OperationMetadata) GetRuntimeMetadata() *anypb.Any

func (*OperationMetadata) GetStartTime 

func (x *OperationMetadata) GetStartTime() *timestamppb.Timestamp

func (*OperationMetadata) ProtoMessage 

func (*OperationMetadata) ProtoMessage()

func (*OperationMetadata) ProtoReflect 

func (x *OperationMetadata) ProtoReflect() protoreflect.Message

func (*OperationMetadata) Reset 

func (x *OperationMetadata) Reset()

func (*OperationMetadata) String 

func (x *OperationMetadata) String() string

type Position 

type Position struct {

	// The name of the reference in whatever reference set is being used.
	ReferenceName string `protobuf:"bytes,1,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
	// The 0-based offset from the start of the forward strand for that reference.
	Position int64 `protobuf:"varint,2,opt,name=position,proto3" json:"position,omitempty"`
	// Whether this position is on the reverse strand, as opposed to the forward
	// strand.
	ReverseStrand bool `protobuf:"varint,3,opt,name=reverse_strand,json=reverseStrand,proto3" json:"reverse_strand,omitempty"`
	// contains filtered or unexported fields
}

An abstraction for referring to a genomic position, in relation to some already known reference. For now, represents a genomic position as a reference name, a base number on that reference (0-based), and a determination of forward or reverse strand.

func (*Position) Descriptor 

func (*Position) Descriptor() ([]byte, []int)

Deprecated: Use Position.ProtoReflect.Descriptor instead.

func (*Position) GetPosition 

func (x *Position) GetPosition() int64

func (*Position) GetReferenceName 

func (x *Position) GetReferenceName() string

func (*Position) GetReverseStrand 

func (x *Position) GetReverseStrand() bool

func (*Position) ProtoMessage 

func (*Position) ProtoMessage()

func (*Position) ProtoReflect 

func (x *Position) ProtoReflect() protoreflect.Message

func (*Position) Reset 

func (x *Position) Reset()

func (*Position) String 

func (x *Position) String() string

type Range 

type Range struct {

	// The reference sequence name, for example `chr1`,
	// `1`, or `chrX`.
	ReferenceName string `protobuf:"bytes,1,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
	// The start position of the range on the reference, 0-based inclusive.
	Start int64 `protobuf:"varint,2,opt,name=start,proto3" json:"start,omitempty"`
	// The end position of the range on the reference, 0-based exclusive.
	End int64 `protobuf:"varint,3,opt,name=end,proto3" json:"end,omitempty"`
	// contains filtered or unexported fields
}

A 0-based half-open genomic coordinate range for search requests.

func (*Range) Descriptor 

func (*Range) Descriptor() ([]byte, []int)

Deprecated: Use Range.ProtoReflect.Descriptor instead.