protobuf

package
v0.0.7 Latest Latest
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 Go to latest Published: Nov 27, 2023 License: MIT Imports: 4 Imported by: 0

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Index

Constants

View Source 
const (
	Default_ExportConfiguration_SegmentSize                      = uint32(10485760)
	Default_ExportConfiguration_EnableSharedPosixfsOptimizations = bool(false)
	Default_ExportConfiguration_BypassIntersectingIntervalsPhase = bool(false)
	Default_ExportConfiguration_AnnotationBufferSize             = uint32(10240)
)

Default values for ExportConfiguration fields.

View Source 
const (
	Default_ImportConfiguration_SizePerColumnPartition           = int64(16384)
	Default_ImportConfiguration_RowBasedPartitioning             = bool(false)
	Default_ImportConfiguration_ProduceCombinedVcf               = bool(false)
	Default_ImportConfiguration_ProduceTiledbArray               = bool(true)
	Default_ImportConfiguration_TreatDeletionsAsIntervals        = bool(true)
	Default_ImportConfiguration_NumParallelVcfFiles              = int32(1)
	Default_ImportConfiguration_DeleteAndCreateTiledbArray       = bool(false)
	Default_ImportConfiguration_DoPingPongBuffering              = bool(true)
	Default_ImportConfiguration_OffloadVcfOutputProcessing       = bool(true)
	Default_ImportConfiguration_DiscardVcfIndex                  = bool(true)
	Default_ImportConfiguration_SegmentSize                      = int64(10485760)
	Default_ImportConfiguration_CompressTiledbArray              = bool(true)
	Default_ImportConfiguration_NumCellsPerTile                  = int64(1000)
	Default_ImportConfiguration_FailIfUpdating                   = bool(false)
	Default_ImportConfiguration_TiledbCompressionType            = int32(1)
	Default_ImportConfiguration_TiledbCompressionLevel           = int32(-1)
	Default_ImportConfiguration_ConsolidateTiledbArrayAfterLoad  = bool(false)
	Default_ImportConfiguration_DisableSyncedWrites              = bool(true)
	Default_ImportConfiguration_LbCallsetRowIdx                  = int64(0)
	Default_ImportConfiguration_EnableSharedPosixfsOptimizations = bool(false)
	Default_ImportConfiguration_DisableDeltaEncodeForOffsets     = bool(false)
	Default_ImportConfiguration_DisableDeltaEncodeForCoords      = bool(false)
	Default_ImportConfiguration_EnableBitShuffleGt               = bool(false)
	Default_ImportConfiguration_EnableLz4CompressionGt           = bool(false)
)

Default values for ImportConfiguration fields.

View Source 
const (
	Default_AnnotationSource_IsVcf = bool(true)
)

Default values for AnnotationSource fields.

View Source 
const (
	Default_GenomicsDBFieldInfo_DisableRemapMissingWithNonRef = bool(false)
)

Default values for GenomicsDBFieldInfo fields.

Variables

View Source 
var File_genomicsdb_callsets_mapping_proto protoreflect.FileDescriptor
View Source 
var File_genomicsdb_coordinates_proto protoreflect.FileDescriptor
View Source 
var File_genomicsdb_export_config_proto protoreflect.FileDescriptor
View Source 
var File_genomicsdb_import_config_proto protoreflect.FileDescriptor
View Source 
var File_genomicsdb_vid_mapping_proto protoreflect.FileDescriptor

Functions

This section is empty.

Types

type AnnotationSource 

type AnnotationSource struct {
	Filename        *string  `protobuf:"bytes,1,req,name=filename" json:"filename,omitempty"`
	DataSource      *string  `protobuf:"bytes,2,req,name=data_source,json=dataSource" json:"data_source,omitempty"`
	Attributes      []string `protobuf:"bytes,3,rep,name=attributes" json:"attributes,omitempty"`
	IsVcf           *bool    `protobuf:"varint,4,opt,name=is_vcf,json=isVcf,def=1" json:"is_vcf,omitempty"`
	FileChromosomes []string `protobuf:"bytes,5,rep,name=file_chromosomes,json=fileChromosomes" json:"file_chromosomes,omitempty"`
	// contains filtered or unexported fields
}

func (*AnnotationSource) Descriptor deprecated 

func (*AnnotationSource) Descriptor() ([]byte, []int)

Deprecated: Use AnnotationSource.ProtoReflect.Descriptor instead.

func (*AnnotationSource) GetAttributes 

func (x *AnnotationSource) GetAttributes() []string

func (*AnnotationSource) GetDataSource 

func (x *AnnotationSource) GetDataSource() string

func (*AnnotationSource) GetFileChromosomes 

func (x *AnnotationSource) GetFileChromosomes() []string

func (*AnnotationSource) GetFilename 

func (x *AnnotationSource) GetFilename() string

func (*AnnotationSource) GetIsVcf 

func (x *AnnotationSource) GetIsVcf() bool

func (*AnnotationSource) ProtoMessage 

func (*AnnotationSource) ProtoMessage()

func (*AnnotationSource) ProtoReflect 

func (x *AnnotationSource) ProtoReflect() protoreflect.Message

func (*AnnotationSource) Reset 

func (x *AnnotationSource) Reset()

func (*AnnotationSource) String 

func (x *AnnotationSource) String() string

type CallsetMappingPB 

type CallsetMappingPB struct {
	Callsets []*SampleIDToTileDBIDMap `protobuf:"bytes,1,rep,name=callsets" json:"callsets,omitempty"`
	// contains filtered or unexported fields
}

func (*CallsetMappingPB) Descriptor deprecated 

func (*CallsetMappingPB) Descriptor() ([]byte, []int)

Deprecated: Use CallsetMappingPB.ProtoReflect.Descriptor instead.

func (*CallsetMappingPB) GetCallsets 

func (x *CallsetMappingPB) GetCallsets() []*SampleIDToTileDBIDMap

func (*CallsetMappingPB) ProtoMessage 

func (*CallsetMappingPB) ProtoMessage()

func (*CallsetMappingPB) ProtoReflect 

func (x *CallsetMappingPB) ProtoReflect() protoreflect.Message

func (*CallsetMappingPB) Reset 

func (x *CallsetMappingPB) Reset()

func (*CallsetMappingPB) String 

func (x *CallsetMappingPB) String() string

type Chromosome 

type Chromosome struct {
	Name               *string `protobuf:"bytes,1,req,name=name" json:"name,omitempty"`
	Length             *int64  `protobuf:"varint,2,req,name=length" json:"length,omitempty"`
	TiledbColumnOffset *int64  `protobuf:"varint,3,req,name=tiledb_column_offset,json=tiledbColumnOffset" json:"tiledb_column_offset,omitempty"`
	// contains filtered or unexported fields
}

func (*Chromosome) Descriptor deprecated 

func (*Chromosome) Descriptor() ([]byte, []int)

Deprecated: Use Chromosome.ProtoReflect.Descriptor instead.

func (*Chromosome) GetLength 

func (x *Chromosome) GetLength() int64

func (*Chromosome) GetName 

func (x *Chromosome) GetName() string

func (*Chromosome) GetTiledbColumnOffset 

func (x *Chromosome) GetTiledbColumnOffset() int64

func (*Chromosome) ProtoMessage 

func (*Chromosome) ProtoMessage()

func (*Chromosome) ProtoReflect 

func (x *Chromosome) ProtoReflect() protoreflect.Message

func (*Chromosome) Reset 

func (x *Chromosome) Reset()

func (*Chromosome) String 

func (x *Chromosome) String() string

type ContigInterval 

type ContigInterval struct {
	Contig *string `protobuf:"bytes,1,req,name=contig" json:"contig,omitempty"`
	Begin  *int64  `protobuf:"varint,2,opt,name=begin" json:"begin,omitempty"`
	End    *int64  `protobuf:"varint,3,opt,name=end" json:"end,omitempty"`
	// contains filtered or unexported fields
}

func (*ContigInterval) Descriptor deprecated 

func (*ContigInterval) Descriptor() ([]byte, []int)

Deprecated: Use ContigInterval.ProtoReflect.Descriptor instead.

func (*ContigInterval) GetBegin 

func (x *ContigInterval) GetBegin() int64

func (*ContigInterval) GetContig 

func (x *ContigInterval) GetContig() string

func (*ContigInterval) GetEnd 

func (x *ContigInterval) GetEnd() int64

func (*ContigInterval) ProtoMessage 

func (*ContigInterval) ProtoMessage()

func (*ContigInterval) ProtoReflect 

func (x *ContigInterval) ProtoReflect() protoreflect.Message

func (*ContigInterval) Reset 

func (x *ContigInterval) Reset()

func (*ContigInterval) String 

func (x *ContigInterval) String() string

type ContigPosition 

type ContigPosition struct {
	Contig   *string `protobuf:"bytes,1,req,name=contig" json:"contig,omitempty"`
	Position *int64  `protobuf:"varint,2,req,name=position" json:"position,omitempty"`
	// contains filtered or unexported fields
}

func (*ContigPosition) Descriptor deprecated 

func (*ContigPosition) Descriptor() ([]byte, []int)

Deprecated: Use ContigPosition.ProtoReflect.Descriptor instead.

func (*ContigPosition) GetContig 

func (x *ContigPosition) GetContig() string

func (*ContigPosition) GetPosition 

func (x *ContigPosition) GetPosition() int64

func (*ContigPosition) ProtoMessage 

func (*ContigPosition) ProtoMessage()

func (*ContigPosition) ProtoReflect 

func (x *ContigPosition) ProtoReflect() protoreflect.Message

func (*ContigPosition) Reset 

func (x *ContigPosition) Reset()

func (*ContigPosition) String 

func (x *ContigPosition) String() string

type ExportConfiguration 

type ExportConfiguration struct {
	Workspace *string `protobuf:"bytes,1,req,name=workspace" json:"workspace,omitempty"`
	// Types that are assignable to Array:
	//
	//	*ExportConfiguration_ArrayName
	//	*ExportConfiguration_GenerateArrayNameFromPartitionBounds
	Array           isExportConfiguration_Array `protobuf_oneof:"array"`
	ReferenceGenome *string                     `protobuf:"bytes,4,opt,name=reference_genome,json=referenceGenome" json:"reference_genome,omitempty"`
	// Only one of the following two fields must be defined - the seconds one is  a simpler
	// version that I would recommend using
	// Ideally, query_column_ranges should be deprecated
	QueryColumnRanges    []*GenomicsDBColumnOrIntervalList `protobuf:"bytes,5,rep,name=query_column_ranges,json=queryColumnRanges" json:"query_column_ranges,omitempty"`
	QueryContigIntervals []*ContigInterval                 `protobuf:"bytes,6,rep,name=query_contig_intervals,json=queryContigIntervals" json:"query_contig_intervals,omitempty"`
	// Similar to above - query_row_ranges should be deprecated
	QueryRowRanges    []*RowRangeList `protobuf:"bytes,7,rep,name=query_row_ranges,json=queryRowRanges" json:"query_row_ranges,omitempty"`
	QuerySampleNames  []string        `protobuf:"bytes,8,rep,name=query_sample_names,json=querySampleNames" json:"query_sample_names,omitempty"`
	Attributes        []string        `protobuf:"bytes,9,rep,name=attributes" json:"attributes,omitempty"`
	QueryFilter       *string         `protobuf:"bytes,10,opt,name=query_filter,json=queryFilter" json:"query_filter,omitempty"`
	VcfHeaderFilename *string         `protobuf:"bytes,11,opt,name=vcf_header_filename,json=vcfHeaderFilename" json:"vcf_header_filename,omitempty"`
	VcfOutputFilename *string         `protobuf:"bytes,12,opt,name=vcf_output_filename,json=vcfOutputFilename" json:"vcf_output_filename,omitempty"`
	VcfOutputFormat   *string         `protobuf:"bytes,13,opt,name=vcf_output_format,json=vcfOutputFormat" json:"vcf_output_format,omitempty"`
	// Types that are assignable to VidMappingInfo:
	//
	//	*ExportConfiguration_VidMappingFile
	//	*ExportConfiguration_VidMapping
	VidMappingInfo isExportConfiguration_VidMappingInfo `protobuf_oneof:"vid_mapping_info"`
	// Types that are assignable to CallsetMappingInfo:
	//
	//	*ExportConfiguration_CallsetMappingFile
	//	*ExportConfiguration_CallsetMapping
	CallsetMappingInfo                            isExportConfiguration_CallsetMappingInfo `protobuf_oneof:"callset_mapping_info"`
	MaxDiploidAltAllelesThatCanBeGenotyped        *uint32                                  `` /* 182-byte string literal not displayed */
	MaxGenotypeCount                              *uint32                                  `protobuf:"varint,19,opt,name=max_genotype_count,json=maxGenotypeCount" json:"max_genotype_count,omitempty"`
	IndexOutput_VCF                               *bool                                    `protobuf:"varint,20,opt,name=index_output_VCF,json=indexOutputVCF" json:"index_output_VCF,omitempty"`
	Produce_GTField                               *bool                                    `protobuf:"varint,21,opt,name=produce_GT_field,json=produceGTField" json:"produce_GT_field,omitempty"`
	Produce_FILTERField                           *bool                                    `protobuf:"varint,22,opt,name=produce_FILTER_field,json=produceFILTERField" json:"produce_FILTER_field,omitempty"`
	SitesOnlyQuery                                *bool                                    `protobuf:"varint,23,opt,name=sites_only_query,json=sitesOnlyQuery" json:"sites_only_query,omitempty"`
	Produce_GTWithMin_PLValueForSpanningDeletions *bool                                    `` /* 199-byte string literal not displayed */
	ScanFull                                      *bool                                    `protobuf:"varint,25,opt,name=scan_full,json=scanFull" json:"scan_full,omitempty"`
	SegmentSize                                   *uint32                                  `protobuf:"varint,26,opt,name=segment_size,json=segmentSize,def=10485760" json:"segment_size,omitempty"`
	CombinedVcfRecordsBufferSizeLimit             *uint32                                  `` /* 163-byte string literal not displayed */
	EnableSharedPosixfsOptimizations              *bool                                    `` /* 162-byte string literal not displayed */
	BypassIntersectingIntervalsPhase              *bool                                    `` /* 162-byte string literal not displayed */
	SparkConfig                                   *SparkConfig                             `protobuf:"bytes,30,opt,name=spark_config,json=sparkConfig" json:"spark_config,omitempty"`
	AnnotationSource                              []*AnnotationSource                      `protobuf:"bytes,31,rep,name=annotation_source,json=annotationSource" json:"annotation_source,omitempty"`
	AnnotationBufferSize                          *uint32                                  `` /* 128-byte string literal not displayed */
	// contains filtered or unexported fields
}

func (*ExportConfiguration) Descriptor deprecated 

func (*ExportConfiguration) Descriptor() ([]byte, []int)

Deprecated: Use ExportConfiguration.ProtoReflect.Descriptor instead.

func (*ExportConfiguration) GetAnnotationBufferSize 

func (x *ExportConfiguration) GetAnnotationBufferSize() uint32

func (*ExportConfiguration) GetAnnotationSource 

func (x *ExportConfiguration) GetAnnotationSource() []*AnnotationSource

func (*ExportConfiguration) GetArray 

func (m *ExportConfiguration) GetArray() isExportConfiguration_Array

func (*ExportConfiguration) GetArrayName 

func (x *ExportConfiguration) GetArrayName() string

func (*ExportConfiguration) GetAttributes 

func (x *ExportConfiguration) GetAttributes() []string

func (*ExportConfiguration) GetBypassIntersectingIntervalsPhase 

func (x *ExportConfiguration) GetBypassIntersectingIntervalsPhase() bool

func (*ExportConfiguration) GetCallsetMapping 

func (x *ExportConfiguration) GetCallsetMapping() *CallsetMappingPB

func (*ExportConfiguration) GetCallsetMappingFile 

func (x *ExportConfiguration) GetCallsetMappingFile() string

func (*ExportConfiguration) GetCallsetMappingInfo 

func (m *ExportConfiguration) GetCallsetMappingInfo() isExportConfiguration_CallsetMappingInfo

func (*ExportConfiguration) GetCombinedVcfRecordsBufferSizeLimit 

func (x *ExportConfiguration) GetCombinedVcfRecordsBufferSizeLimit() uint32

func (*ExportConfiguration) GetEnableSharedPosixfsOptimizations 

func (x *ExportConfiguration) GetEnableSharedPosixfsOptimizations() bool

func (*ExportConfiguration) GetGenerateArrayNameFromPartitionBounds 

func (x *ExportConfiguration) GetGenerateArrayNameFromPartitionBounds() bool

func (*ExportConfiguration) GetIndexOutput_VCF 

func (x *ExportConfiguration) GetIndexOutput_VCF() bool

func (*ExportConfiguration) GetMaxDiploidAltAllelesThatCanBeGenotyped 

func (x *ExportConfiguration) GetMaxDiploidAltAllelesThatCanBeGenotyped() uint32

func (*ExportConfiguration) GetMaxGenotypeCount 

func (x *ExportConfiguration) GetMaxGenotypeCount() uint32

func (*ExportConfiguration) GetProduce_FILTERField 

func (x *ExportConfiguration) GetProduce_FILTERField() bool

func (*ExportConfiguration) GetProduce_GTField 

func (x *ExportConfiguration) GetProduce_GTField() bool

func (*ExportConfiguration) GetProduce_GTWithMin_PLValueForSpanningDeletions 

func (x *ExportConfiguration) GetProduce_GTWithMin_PLValueForSpanningDeletions() bool

func (*ExportConfiguration) GetQueryColumnRanges 

func (x *ExportConfiguration) GetQueryColumnRanges() []*GenomicsDBColumnOrIntervalList

func (*ExportConfiguration) GetQueryContigIntervals 

func (x *ExportConfiguration) GetQueryContigIntervals() []*ContigInterval

func (*ExportConfiguration) GetQueryFilter 

func (x *ExportConfiguration) GetQueryFilter() string

func (*ExportConfiguration) GetQueryRowRanges 

func (x *ExportConfiguration) GetQueryRowRanges() []*RowRangeList

func (*ExportConfiguration) GetQuerySampleNames 

func (x *ExportConfiguration) GetQuerySampleNames() []string

func (*ExportConfiguration) GetReferenceGenome 

func (x *ExportConfiguration) GetReferenceGenome() string

func (*ExportConfiguration) GetScanFull 

func (x *ExportConfiguration) GetScanFull() bool

func (*ExportConfiguration) GetSegmentSize 

func (x *ExportConfiguration) GetSegmentSize() uint32

func (*ExportConfiguration) GetSitesOnlyQuery 

func (x *ExportConfiguration) GetSitesOnlyQuery() bool

func (*ExportConfiguration) GetSparkConfig 

func (x *ExportConfiguration) GetSparkConfig() *SparkConfig

func (*ExportConfiguration) GetVcfHeaderFilename 

func (x *ExportConfiguration) GetVcfHeaderFilename() string

func (*ExportConfiguration) GetVcfOutputFilename 

func (x *ExportConfiguration) GetVcfOutputFilename() string

func (*ExportConfiguration) GetVcfOutputFormat 

func (x *ExportConfiguration) GetVcfOutputFormat() string

func (*ExportConfiguration) GetVidMapping 

func (x *ExportConfiguration) GetVidMapping() *VidMappingPB

func (*ExportConfiguration) GetVidMappingFile 

func (x *ExportConfiguration) GetVidMappingFile() string

func (*ExportConfiguration) GetVidMappingInfo 

func (m *ExportConfiguration) GetVidMappingInfo() isExportConfiguration_VidMappingInfo

func (*ExportConfiguration) GetWorkspace 

func (x *ExportConfiguration) GetWorkspace() string

func (*ExportConfiguration) ProtoMessage 

func (*ExportConfiguration) ProtoMessage()

func (*ExportConfiguration) ProtoReflect 

func (x *ExportConfiguration) ProtoReflect() protoreflect.Message

func (*ExportConfiguration) Reset 

func (x *ExportConfiguration) Reset()

func (*ExportConfiguration) String 

func (x *ExportConfiguration) String() string

type ExportConfiguration_ArrayName 

type ExportConfiguration_ArrayName struct {
	ArrayName string `protobuf:"bytes,2,opt,name=array_name,json=arrayName,oneof"`
}

type ExportConfiguration_CallsetMapping 

type ExportConfiguration_CallsetMapping struct {
	CallsetMapping *CallsetMappingPB `protobuf:"bytes,17,opt,name=callset_mapping,json=callsetMapping,oneof"`
}

type ExportConfiguration_CallsetMappingFile 

type ExportConfiguration_CallsetMappingFile struct {
	CallsetMappingFile string `protobuf:"bytes,16,opt,name=callset_mapping_file,json=callsetMappingFile,oneof"`
}

type ExportConfiguration_GenerateArrayNameFromPartitionBounds 

type ExportConfiguration_GenerateArrayNameFromPartitionBounds struct {
	GenerateArrayNameFromPartitionBounds bool `protobuf:"varint,3,opt,name=generate_array_name_from_partition_bounds,json=generateArrayNameFromPartitionBounds,oneof"`
}

type ExportConfiguration_VidMapping 

type ExportConfiguration_VidMapping struct {
	VidMapping *VidMappingPB `protobuf:"bytes,15,opt,name=vid_mapping,json=vidMapping,oneof"`
}

type ExportConfiguration_VidMappingFile 

type ExportConfiguration_VidMappingFile struct {
	VidMappingFile string `protobuf:"bytes,14,opt,name=vid_mapping_file,json=vidMappingFile,oneof"`
}

type FieldLengthDescriptorComponentPB 

type FieldLengthDescriptorComponentPB struct {

	// Types that are assignable to LengthDescriptor:
	//
	//	*FieldLengthDescriptorComponentPB_VariableLengthDescriptor
	//	*FieldLengthDescriptorComponentPB_FixedLength
	LengthDescriptor isFieldLengthDescriptorComponentPB_LengthDescriptor `protobuf_oneof:"length_descriptor"`
	// contains filtered or unexported fields
}

func (*FieldLengthDescriptorComponentPB) Descriptor deprecated 

func (*FieldLengthDescriptorComponentPB) Descriptor() ([]byte, []int)

Deprecated: Use FieldLengthDescriptorComponentPB.ProtoReflect.Descriptor instead.

func (*FieldLengthDescriptorComponentPB) GetFixedLength 

func (x *FieldLengthDescriptorComponentPB) GetFixedLength() int32

func (*FieldLengthDescriptorComponentPB) GetLengthDescriptor 

func (m *FieldLengthDescriptorComponentPB) GetLengthDescriptor() isFieldLengthDescriptorComponentPB_LengthDescriptor

func (*FieldLengthDescriptorComponentPB) GetVariableLengthDescriptor 

func (x *FieldLengthDescriptorComponentPB) GetVariableLengthDescriptor() string

func (*FieldLengthDescriptorComponentPB) ProtoMessage 

func (*FieldLengthDescriptorComponentPB) ProtoMessage()

func (*FieldLengthDescriptorComponentPB) ProtoReflect 

func (x *FieldLengthDescriptorComponentPB) ProtoReflect() protoreflect.Message

func (*FieldLengthDescriptorComponentPB) Reset 

func (x *FieldLengthDescriptorComponentPB) Reset()

func (*FieldLengthDescriptorComponentPB) String 

func (x *FieldLengthDescriptorComponentPB) String() string

type FieldLengthDescriptorComponentPB_FixedLength 

type FieldLengthDescriptorComponentPB_FixedLength struct {
	FixedLength int32 `protobuf:"varint,2,opt,name=fixed_length,json=fixedLength,oneof"`
}

type FieldLengthDescriptorComponentPB_VariableLengthDescriptor 

type FieldLengthDescriptorComponentPB_VariableLengthDescriptor struct {
	VariableLengthDescriptor string `protobuf:"bytes,1,opt,name=variable_length_descriptor,json=variableLengthDescriptor,oneof"`
}

type GenomicsDBColumn 

type GenomicsDBColumn struct {

	// Types that are assignable to Column:
	//
	//	*GenomicsDBColumn_TiledbColumn
	//	*GenomicsDBColumn_ContigPosition
	Column isGenomicsDBColumn_Column `protobuf_oneof:"column"`
	// contains filtered or unexported fields
}

func (*GenomicsDBColumn) Descriptor deprecated 

func (*GenomicsDBColumn) Descriptor() ([]byte, []int)

Deprecated: Use GenomicsDBColumn.ProtoReflect.Descriptor instead.

func (*GenomicsDBColumn) GetColumn 

func (m *GenomicsDBColumn) GetColumn() isGenomicsDBColumn_Column

func (*GenomicsDBColumn) GetContigPosition 

func (x *GenomicsDBColumn) GetContigPosition() *ContigPosition

func (*GenomicsDBColumn) GetTiledbColumn 

func (x *GenomicsDBColumn) GetTiledbColumn() int64

func (*GenomicsDBColumn) ProtoMessage 

func (*GenomicsDBColumn) ProtoMessage()

func (*GenomicsDBColumn) ProtoReflect 

func (x *GenomicsDBColumn) ProtoReflect() protoreflect.Message

func (*GenomicsDBColumn) Reset 

func (x *GenomicsDBColumn) Reset()

func (*GenomicsDBColumn) String 

func (x *GenomicsDBColumn) String() string

type GenomicsDBColumnInterval 

type GenomicsDBColumnInterval struct {

	// Types that are assignable to Interval:
	//
	//	*GenomicsDBColumnInterval_TiledbColumnInterval
	//	*GenomicsDBColumnInterval_ContigInterval
	Interval isGenomicsDBColumnInterval_Interval `protobuf_oneof:"interval"`
	// contains filtered or unexported fields
}

func (*GenomicsDBColumnInterval) Descriptor deprecated 

func (*GenomicsDBColumnInterval) Descriptor() ([]byte, []int)

Deprecated: Use GenomicsDBColumnInterval.ProtoReflect.Descriptor instead.

func (*GenomicsDBColumnInterval) GetContigInterval 

func (x *GenomicsDBColumnInterval) GetContigInterval() *ContigInterval

func (*GenomicsDBColumnInterval) GetInterval 

func (m *GenomicsDBColumnInterval) GetInterval() isGenomicsDBColumnInterval_Interval

func (*GenomicsDBColumnInterval) GetTiledbColumnInterval 

func (x *GenomicsDBColumnInterval) GetTiledbColumnInterval() *TileDBColumnInterval

func (*GenomicsDBColumnInterval) ProtoMessage 

func (*GenomicsDBColumnInterval) ProtoMessage()

func (*GenomicsDBColumnInterval) ProtoReflect 

func (x *GenomicsDBColumnInterval) ProtoReflect() protoreflect.Message

func (*GenomicsDBColumnInterval) Reset 

func (x *GenomicsDBColumnInterval) Reset()

func (*GenomicsDBColumnInterval) String 

func (x *GenomicsDBColumnInterval) String() string

type GenomicsDBColumnInterval_ContigInterval 

type GenomicsDBColumnInterval_ContigInterval struct {
	ContigInterval *ContigInterval `protobuf:"bytes,2,opt,name=contig_interval,json=contigInterval,oneof"`
}

type GenomicsDBColumnInterval_TiledbColumnInterval 

type GenomicsDBColumnInterval_TiledbColumnInterval struct {
	TiledbColumnInterval *TileDBColumnInterval `protobuf:"bytes,1,opt,name=tiledb_column_interval,json=tiledbColumnInterval,oneof"`
}

type GenomicsDBColumnOrInterval 

type GenomicsDBColumnOrInterval struct {

	// Types that are assignable to ColumnOrInterval:
	//
	//	*GenomicsDBColumnOrInterval_Column
	//	*GenomicsDBColumnOrInterval_ColumnInterval
	ColumnOrInterval isGenomicsDBColumnOrInterval_ColumnOrInterval `protobuf_oneof:"column_or_interval"`
	// contains filtered or unexported fields
}

func (*GenomicsDBColumnOrInterval) Descriptor deprecated 

func (*GenomicsDBColumnOrInterval) Descriptor() ([]byte, []int)

Deprecated: Use GenomicsDBColumnOrInterval.ProtoReflect.Descriptor instead.

func (*GenomicsDBColumnOrInterval) GetColumn 

func (x *GenomicsDBColumnOrInterval) GetColumn() *GenomicsDBColumn

func (*GenomicsDBColumnOrInterval) GetColumnInterval 

func (x *GenomicsDBColumnOrInterval) GetColumnInterval() *GenomicsDBColumnInterval

func (*GenomicsDBColumnOrInterval) GetColumnOrInterval 

func (m *GenomicsDBColumnOrInterval) GetColumnOrInterval() isGenomicsDBColumnOrInterval_ColumnOrInterval

func (*GenomicsDBColumnOrInterval) ProtoMessage 

func (*GenomicsDBColumnOrInterval) ProtoMessage()

func (*GenomicsDBColumnOrInterval) ProtoReflect 

func (x *GenomicsDBColumnOrInterval) ProtoReflect() protoreflect.Message

func (*GenomicsDBColumnOrInterval) Reset 

func (x *GenomicsDBColumnOrInterval) Reset()

func (*GenomicsDBColumnOrInterval) String 

func (x *GenomicsDBColumnOrInterval) String() string

type GenomicsDBColumnOrIntervalList 

type GenomicsDBColumnOrIntervalList struct {
	ColumnOrIntervalList []*GenomicsDBColumnOrInterval `protobuf:"bytes,1,rep,name=column_or_interval_list,json=columnOrIntervalList" json:"column_or_interval_list,omitempty"`
	// contains filtered or unexported fields
}

func (*GenomicsDBColumnOrIntervalList) Descriptor deprecated 

func (*GenomicsDBColumnOrIntervalList) Descriptor() ([]byte, []int)

Deprecated: Use GenomicsDBColumnOrIntervalList.ProtoReflect.Descriptor instead.

func (*GenomicsDBColumnOrIntervalList) GetColumnOrIntervalList 

func (x *GenomicsDBColumnOrIntervalList) GetColumnOrIntervalList() []*GenomicsDBColumnOrInterval

func (*GenomicsDBColumnOrIntervalList) ProtoMessage 

func (*GenomicsDBColumnOrIntervalList) ProtoMessage()

func (*GenomicsDBColumnOrIntervalList) ProtoReflect 

func (x *GenomicsDBColumnOrIntervalList) ProtoReflect() protoreflect.Message

func (*GenomicsDBColumnOrIntervalList) Reset 

func (x *GenomicsDBColumnOrIntervalList) Reset()

func (*GenomicsDBColumnOrIntervalList) String 

func (x *GenomicsDBColumnOrIntervalList) String() string

type GenomicsDBColumnOrInterval_Column 

type GenomicsDBColumnOrInterval_Column struct {
	Column *GenomicsDBColumn `protobuf:"bytes,1,opt,name=column,oneof"`
}

type GenomicsDBColumnOrInterval_ColumnInterval 

type GenomicsDBColumnOrInterval_ColumnInterval struct {
	ColumnInterval *GenomicsDBColumnInterval `protobuf:"bytes,2,opt,name=column_interval,json=columnInterval,oneof"`
}

type GenomicsDBColumn_ContigPosition 

type GenomicsDBColumn_ContigPosition struct {
	ContigPosition *ContigPosition `protobuf:"bytes,2,opt,name=contig_position,json=contigPosition,oneof"`
}

type GenomicsDBColumn_TiledbColumn 

type GenomicsDBColumn_TiledbColumn struct {
	TiledbColumn int64 `protobuf:"varint,1,opt,name=tiledb_column,json=tiledbColumn,oneof"`
}

type GenomicsDBFieldInfo 

type GenomicsDBFieldInfo struct {
	Name                     *string                             `protobuf:"bytes,1,req,name=name" json:"name,omitempty"`
	Type                     []string                            `protobuf:"bytes,2,rep,name=type" json:"type,omitempty"`
	VcfFieldClass            []string                            `protobuf:"bytes,3,rep,name=vcf_field_class,json=vcfFieldClass" json:"vcf_field_class,omitempty"`
	VcfType                  *string                             `protobuf:"bytes,4,opt,name=vcf_type,json=vcfType" json:"vcf_type,omitempty"`
	Length                   []*FieldLengthDescriptorComponentPB `protobuf:"bytes,5,rep,name=length" json:"length,omitempty"`
	VcfDelimiter             []string                            `protobuf:"bytes,6,rep,name=vcf_delimiter,json=vcfDelimiter" json:"vcf_delimiter,omitempty"`
	VCFFieldCombineOperation *string                             `` /* 130-byte string literal not displayed */
	// useful when multiple fields of different types/length with the same
	// name (FILTER, FORMAT, INFO)  are defined in the VCF header
	VcfName                       *string `protobuf:"bytes,8,opt,name=vcf_name,json=vcfName" json:"vcf_name,omitempty"`
	DisableRemapMissingWithNonRef *bool   `` /* 156-byte string literal not displayed */
	// contains filtered or unexported fields
}

func (*GenomicsDBFieldInfo) Descriptor deprecated 

func (*GenomicsDBFieldInfo) Descriptor() ([]byte, []int)

Deprecated: Use GenomicsDBFieldInfo.ProtoReflect.Descriptor instead.

func (*GenomicsDBFieldInfo) GetDisableRemapMissingWithNonRef 

func (x *GenomicsDBFieldInfo) GetDisableRemapMissingWithNonRef() bool

func (*GenomicsDBFieldInfo) GetLength 

func (x *GenomicsDBFieldInfo) GetLength() []*FieldLengthDescriptorComponentPB

func (*GenomicsDBFieldInfo) GetName 

func (x *GenomicsDBFieldInfo) GetName() string

func (*GenomicsDBFieldInfo) GetType 

func (x *GenomicsDBFieldInfo) GetType() []string

func (*GenomicsDBFieldInfo) GetVCFFieldCombineOperation 

func (x *GenomicsDBFieldInfo) GetVCFFieldCombineOperation() string

func (*GenomicsDBFieldInfo) GetVcfDelimiter 

func (x *GenomicsDBFieldInfo) GetVcfDelimiter() []string

func (*GenomicsDBFieldInfo) GetVcfFieldClass 

func (x *GenomicsDBFieldInfo) GetVcfFieldClass() []string

func (*GenomicsDBFieldInfo) GetVcfName 

func (x *GenomicsDBFieldInfo) GetVcfName() string

func (*GenomicsDBFieldInfo) GetVcfType 

func (x *GenomicsDBFieldInfo) GetVcfType() string

func (*GenomicsDBFieldInfo) ProtoMessage 

func (*GenomicsDBFieldInfo) ProtoMessage()

func (*GenomicsDBFieldInfo) ProtoReflect 

func (x *GenomicsDBFieldInfo) ProtoReflect() protoreflect.Message

func (*GenomicsDBFieldInfo) Reset 

func (x *GenomicsDBFieldInfo) Reset()

func (*GenomicsDBFieldInfo) String 

func (x *GenomicsDBFieldInfo) String() string

type ImportConfiguration 

type ImportConfiguration struct {
	SizePerColumnPartition *int64       `` /* 135-byte string literal not displayed */
	RowBasedPartitioning   *bool        `protobuf:"varint,1,opt,name=row_based_partitioning,json=rowBasedPartitioning,def=0" json:"row_based_partitioning,omitempty"`
	ProduceCombinedVcf     *bool        `protobuf:"varint,2,opt,name=produce_combined_vcf,json=produceCombinedVcf,def=0" json:"produce_combined_vcf,omitempty"`
	ProduceTiledbArray     *bool        `protobuf:"varint,3,opt,name=produce_tiledb_array,json=produceTiledbArray,def=1" json:"produce_tiledb_array,omitempty"`
	ColumnPartitions       []*Partition `protobuf:"bytes,4,rep,name=column_partitions,json=columnPartitions" json:"column_partitions,omitempty"`
	// Types that are assignable to VidMappingOptions:
	//
	//	*ImportConfiguration_VidMappingFile
	//	*ImportConfiguration_VidMapping
	VidMappingOptions isImportConfiguration_VidMappingOptions `protobuf_oneof:"vid_mapping_options"`
	// Types that are assignable to CallsetMappingOptions:
	//
	//	*ImportConfiguration_CallsetMappingFile
	//	*ImportConfiguration_CallsetMapping
	CallsetMappingOptions            isImportConfiguration_CallsetMappingOptions `protobuf_oneof:"callset_mapping_options"`
	TreatDeletionsAsIntervals        *bool                                       `` /* 140-byte string literal not displayed */
	NumParallelVcfFiles              *int32                                      `protobuf:"varint,9,opt,name=num_parallel_vcf_files,json=numParallelVcfFiles,def=1" json:"num_parallel_vcf_files,omitempty"`
	DeleteAndCreateTiledbArray       *bool                                       `` /* 146-byte string literal not displayed */
	DoPingPongBuffering              *bool                                       `protobuf:"varint,11,opt,name=do_ping_pong_buffering,json=doPingPongBuffering,def=1" json:"do_ping_pong_buffering,omitempty"`
	OffloadVcfOutputProcessing       *bool                                       `` /* 144-byte string literal not displayed */
	DiscardVcfIndex                  *bool                                       `protobuf:"varint,13,opt,name=discard_vcf_index,json=discardVcfIndex,def=1" json:"discard_vcf_index,omitempty"`
	SegmentSize                      *int64                                      `protobuf:"varint,14,opt,name=segment_size,json=segmentSize,def=10485760" json:"segment_size,omitempty"`
	CompressTiledbArray              *bool                                       `protobuf:"varint,15,opt,name=compress_tiledb_array,json=compressTiledbArray,def=1" json:"compress_tiledb_array,omitempty"`
	NumCellsPerTile                  *int64                                      `protobuf:"varint,16,opt,name=num_cells_per_tile,json=numCellsPerTile,def=1000" json:"num_cells_per_tile,omitempty"`
	FailIfUpdating                   *bool                                       `protobuf:"varint,17,opt,name=fail_if_updating,json=failIfUpdating,def=0" json:"fail_if_updating,omitempty"`
	TiledbCompressionType            *int32                                      `` /* 127-byte string literal not displayed */
	TiledbCompressionLevel           *int32                                      `` /* 131-byte string literal not displayed */
	ConsolidateTiledbArrayAfterLoad  *bool                                       `` /* 161-byte string literal not displayed */
	DisableSyncedWrites              *bool                                       `protobuf:"varint,21,opt,name=disable_synced_writes,json=disableSyncedWrites,def=1" json:"disable_synced_writes,omitempty"`
	IgnoreCellsNotInPartition        *bool                                       `` /* 137-byte string literal not displayed */
	LbCallsetRowIdx                  *int64                                      `protobuf:"varint,23,opt,name=lb_callset_row_idx,json=lbCallsetRowIdx,def=0" json:"lb_callset_row_idx,omitempty"`
	UbCallsetRowIdx                  *int64                                      `protobuf:"varint,24,opt,name=ub_callset_row_idx,json=ubCallsetRowIdx" json:"ub_callset_row_idx,omitempty"`
	EnableSharedPosixfsOptimizations *bool                                       `` /* 162-byte string literal not displayed */
	DisableDeltaEncodeForOffsets     *bool                                       `` /* 152-byte string literal not displayed */
	DisableDeltaEncodeForCoords      *bool                                       `` /* 149-byte string literal not displayed */
	EnableBitShuffleGt               *bool                                       `protobuf:"varint,30,opt,name=enable_bit_shuffle_gt,json=enableBitShuffleGt,def=0" json:"enable_bit_shuffle_gt,omitempty"`
	EnableLz4CompressionGt           *bool                                       `` /* 132-byte string literal not displayed */
	ReferenceGenome                  *string                                     `protobuf:"bytes,32,opt,name=reference_genome,json=referenceGenome" json:"reference_genome,omitempty"`
	VcfHeaderFilename                *string                                     `protobuf:"bytes,33,opt,name=vcf_header_filename,json=vcfHeaderFilename" json:"vcf_header_filename,omitempty"`
	// contains filtered or unexported fields
}

func (*ImportConfiguration) Descriptor deprecated 

func (*ImportConfiguration) Descriptor() ([]byte, []int)

Deprecated: Use ImportConfiguration.ProtoReflect.Descriptor instead.

func (*ImportConfiguration) GetCallsetMapping 

func (x *ImportConfiguration) GetCallsetMapping() *CallsetMappingPB

func (*ImportConfiguration) GetCallsetMappingFile 

func (x *ImportConfiguration) GetCallsetMappingFile() string

func (*ImportConfiguration) GetCallsetMappingOptions 

func (m *ImportConfiguration) GetCallsetMappingOptions() isImportConfiguration_CallsetMappingOptions

func (*ImportConfiguration) GetColumnPartitions 

func (x *ImportConfiguration) GetColumnPartitions() []*Partition

func (*ImportConfiguration) GetCompressTiledbArray 

func (x *ImportConfiguration) GetCompressTiledbArray() bool

func (*ImportConfiguration) GetConsolidateTiledbArrayAfterLoad 

func (x *ImportConfiguration) GetConsolidateTiledbArrayAfterLoad() bool

func (*ImportConfiguration) GetDeleteAndCreateTiledbArray 

func (x *ImportConfiguration) GetDeleteAndCreateTiledbArray() bool

func (*ImportConfiguration) GetDisableDeltaEncodeForCoords 

func (x *ImportConfiguration) GetDisableDeltaEncodeForCoords() bool

func (*ImportConfiguration) GetDisableDeltaEncodeForOffsets 

func (x *ImportConfiguration) GetDisableDeltaEncodeForOffsets() bool

func (*ImportConfiguration) GetDisableSyncedWrites 

func (x *ImportConfiguration) GetDisableSyncedWrites() bool

func (*ImportConfiguration) GetDiscardVcfIndex 

func (x *ImportConfiguration) GetDiscardVcfIndex() bool

func (*ImportConfiguration) GetDoPingPongBuffering 

func (x *ImportConfiguration) GetDoPingPongBuffering() bool

func (*ImportConfiguration) GetEnableBitShuffleGt 

func (x *ImportConfiguration) GetEnableBitShuffleGt() bool

func (*ImportConfiguration) GetEnableLz4CompressionGt 

func (x *ImportConfiguration) GetEnableLz4CompressionGt() bool

func (*ImportConfiguration) GetEnableSharedPosixfsOptimizations 

func (x *ImportConfiguration) GetEnableSharedPosixfsOptimizations() bool

func (*ImportConfiguration) GetFailIfUpdating 

func (x *ImportConfiguration) GetFailIfUpdating() bool

func (*ImportConfiguration) GetIgnoreCellsNotInPartition 

func (x *ImportConfiguration) GetIgnoreCellsNotInPartition() bool

func (*ImportConfiguration) GetLbCallsetRowIdx 

func (x *ImportConfiguration) GetLbCallsetRowIdx() int64

func (*ImportConfiguration) GetNumCellsPerTile 

func (x *ImportConfiguration) GetNumCellsPerTile() int64

func (*ImportConfiguration) GetNumParallelVcfFiles 

func (x *ImportConfiguration) GetNumParallelVcfFiles() int32

func (*ImportConfiguration) GetOffloadVcfOutputProcessing 

func (x *ImportConfiguration) GetOffloadVcfOutputProcessing() bool

func (*ImportConfiguration) GetProduceCombinedVcf 

func (x *ImportConfiguration) GetProduceCombinedVcf() bool

func (*ImportConfiguration) GetProduceTiledbArray 

func (x *ImportConfiguration) GetProduceTiledbArray() bool

func (*ImportConfiguration) GetReferenceGenome 

func (x *ImportConfiguration) GetReferenceGenome() string

func (*ImportConfiguration) GetRowBasedPartitioning 

func (x *ImportConfiguration) GetRowBasedPartitioning() bool

func (*ImportConfiguration) GetSegmentSize 

func (x *ImportConfiguration) GetSegmentSize() int64

func (*ImportConfiguration) GetSizePerColumnPartition 

func (x *ImportConfiguration) GetSizePerColumnPartition() int64

func (*ImportConfiguration) GetTiledbCompressionLevel 

func (x *ImportConfiguration) GetTiledbCompressionLevel() int32

func (*ImportConfiguration) GetTiledbCompressionType 

func (x *ImportConfiguration) GetTiledbCompressionType() int32

func (*ImportConfiguration) GetTreatDeletionsAsIntervals 

func (x *ImportConfiguration) GetTreatDeletionsAsIntervals() bool

func (*ImportConfiguration) GetUbCallsetRowIdx 

func (x *ImportConfiguration) GetUbCallsetRowIdx() int64

func (*ImportConfiguration) GetVcfHeaderFilename 

func (x *ImportConfiguration) GetVcfHeaderFilename() string

func (*ImportConfiguration) GetVidMapping 

func (x *ImportConfiguration) GetVidMapping() *VidMappingPB

func (*ImportConfiguration) GetVidMappingFile 

func (x *ImportConfiguration) GetVidMappingFile() string

func (*ImportConfiguration) GetVidMappingOptions 

func (m *ImportConfiguration) GetVidMappingOptions() isImportConfiguration_VidMappingOptions

func (*ImportConfiguration) ProtoMessage 

func (*ImportConfiguration) ProtoMessage()

func (*ImportConfiguration) ProtoReflect 

func (x *ImportConfiguration) ProtoReflect() protoreflect.Message

func (*ImportConfiguration) Reset 

func (x *ImportConfiguration) Reset()

func (*ImportConfiguration) String 

func (x *ImportConfiguration) String() string

type ImportConfiguration_CallsetMapping 

type ImportConfiguration_CallsetMapping struct {
	CallsetMapping *CallsetMappingPB `protobuf:"bytes,26,opt,name=callset_mapping,json=callsetMapping,oneof"`
}

type ImportConfiguration_CallsetMappingFile 

type ImportConfiguration_CallsetMappingFile struct {
	CallsetMappingFile string `protobuf:"bytes,6,opt,name=callset_mapping_file,json=callsetMappingFile,oneof"`
}

type ImportConfiguration_VidMapping 

type ImportConfiguration_VidMapping struct {
	VidMapping *VidMappingPB `protobuf:"bytes,25,opt,name=vid_mapping,json=vidMapping,oneof"`
}

type ImportConfiguration_VidMappingFile 

type ImportConfiguration_VidMappingFile struct {
	VidMappingFile string `protobuf:"bytes,5,opt,name=vid_mapping_file,json=vidMappingFile,oneof"`
}

type Partition 

type Partition struct {
	Begin     *GenomicsDBColumn `protobuf:"bytes,1,req,name=begin" json:"begin,omitempty"`
	Workspace *string           `protobuf:"bytes,2,opt,name=workspace" json:"workspace,omitempty"`
	// Types that are assignable to Array:
	//
	//	*Partition_ArrayName
	//	*Partition_GenerateArrayNameFromPartitionBounds
	Array             isPartition_Array `protobuf_oneof:"array"`
	VcfOutputFilename *string           `protobuf:"bytes,5,opt,name=vcf_output_filename,json=vcfOutputFilename" json:"vcf_output_filename,omitempty"`
	VcfHeaderFilename *string           `protobuf:"bytes,7,opt,name=vcf_header_filename,json=vcfHeaderFilename" json:"vcf_header_filename,omitempty"`
	End               *GenomicsDBColumn `protobuf:"bytes,6,opt,name=end" json:"end,omitempty"`
	// contains filtered or unexported fields
}

func (*Partition) Descriptor deprecated 

func (*Partition) Descriptor() ([]byte, []int)

Deprecated: Use Partition.ProtoReflect.Descriptor instead.

func (*Partition) GetArray 

func (m *Partition) GetArray() isPartition_Array

func (*Partition) GetArrayName 

func (x *Partition) GetArrayName() string

func (*Partition) GetBegin 

func (x *Partition) GetBegin() *GenomicsDBColumn

func (*Partition) GetEnd 

func (x *Partition) GetEnd() *GenomicsDBColumn

func (*Partition) GetGenerateArrayNameFromPartitionBounds 

func (x *Partition) GetGenerateArrayNameFromPartitionBounds() bool

func (*Partition) GetVcfHeaderFilename 

func (x *Partition) GetVcfHeaderFilename() string

func (*Partition) GetVcfOutputFilename 

func (x *Partition) GetVcfOutputFilename() string

func (*Partition) GetWorkspace 

func (x *Partition) GetWorkspace() string

func (*Partition) ProtoMessage 

func (*Partition) ProtoMessage()

func (*Partition) ProtoReflect 

func (x *Partition) ProtoReflect() protoreflect.Message

func (*Partition) Reset 

func (x *Partition) Reset()

func (*Partition) String 

func (x *Partition) String() string

type Partition_ArrayName 

type Partition_ArrayName struct {
	ArrayName string `protobuf:"bytes,3,opt,name=array_name,json=arrayName,oneof"`
}

type Partition_GenerateArrayNameFromPartitionBounds 

type Partition_GenerateArrayNameFromPartitionBounds struct {
	GenerateArrayNameFromPartitionBounds bool `protobuf:"varint,4,opt,name=generate_array_name_from_partition_bounds,json=generateArrayNameFromPartitionBounds,oneof"`
}

type RowRange 

type RowRange struct {
	Low  *int64 `protobuf:"varint,1,req,name=low" json:"low,omitempty"`
	High *int64 `protobuf:"varint,2,req,name=high" json:"high,omitempty"`
	// contains filtered or unexported fields
}

func (*RowRange) Descriptor deprecated 

func (*RowRange) Descriptor() ([]byte, []int)

Deprecated: Use RowRange.ProtoReflect.Descriptor instead.

func (*RowRange) GetHigh 

func (x *RowRange) GetHigh() int64

func (*RowRange) GetLow 

func (x *RowRange) GetLow() int64

func (*RowRange) ProtoMessage 

func (*RowRange) ProtoMessage()

func (*RowRange) ProtoReflect 

func (x *RowRange) ProtoReflect() protoreflect.Message

func (*RowRange) Reset 

func (x *RowRange) Reset()

func (*RowRange) String 

func (x *RowRange) String() string

type RowRangeList 

type RowRangeList struct {
	RangeList []*RowRange `protobuf:"bytes,1,rep,name=range_list,json=rangeList" json:"range_list,omitempty"`
	// contains filtered or unexported fields
}

func (*RowRangeList) Descriptor deprecated 

func (*RowRangeList) Descriptor() ([]byte, []int)

Deprecated: Use RowRangeList.ProtoReflect.Descriptor instead.

func (*RowRangeList) GetRangeList 

func (x *RowRangeList) GetRangeList() []*RowRange

func (*RowRangeList) ProtoMessage 

func (*RowRangeList) ProtoMessage()

func (*RowRangeList) ProtoReflect 

func (x *RowRangeList) ProtoReflect() protoreflect.Message

func (*RowRangeList) Reset 

func (x *RowRangeList) Reset()

func (*RowRangeList) String 

func (x *RowRangeList) String() string

type SampleIDToTileDBIDMap 

type SampleIDToTileDBIDMap struct {
	SampleName *string `protobuf:"bytes,1,req,name=sample_name,json=sampleName" json:"sample_name,omitempty"`
	RowIdx     *int64  `protobuf:"varint,2,req,name=row_idx,json=rowIdx" json:"row_idx,omitempty"`
	IdxInFile  *int64  `protobuf:"varint,3,req,name=idx_in_file,json=idxInFile" json:"idx_in_file,omitempty"`
	// Types that are assignable to Source:
	//
	//	*SampleIDToTileDBIDMap_StreamName
	//	*SampleIDToTileDBIDMap_Filename
	Source isSampleIDToTileDBIDMap_Source `protobuf_oneof:"source"`
	// contains filtered or unexported fields
}

func (*SampleIDToTileDBIDMap) Descriptor deprecated 

func (*SampleIDToTileDBIDMap) Descriptor() ([]byte, []int)

Deprecated: Use SampleIDToTileDBIDMap.ProtoReflect.Descriptor instead.

func (*SampleIDToTileDBIDMap) GetFilename 

func (x *SampleIDToTileDBIDMap) GetFilename() string

func (*SampleIDToTileDBIDMap) GetIdxInFile 

func (x *SampleIDToTileDBIDMap) GetIdxInFile() int64

func (*SampleIDToTileDBIDMap) GetRowIdx 

func (x *SampleIDToTileDBIDMap) GetRowIdx() int64

func (*SampleIDToTileDBIDMap) GetSampleName 

func (x *SampleIDToTileDBIDMap) GetSampleName() string

func (*SampleIDToTileDBIDMap) GetSource 

func (m *SampleIDToTileDBIDMap) GetSource() isSampleIDToTileDBIDMap_Source

func (*SampleIDToTileDBIDMap) GetStreamName 

func (x *SampleIDToTileDBIDMap) GetStreamName() string

func (*SampleIDToTileDBIDMap) ProtoMessage 

func (*SampleIDToTileDBIDMap) ProtoMessage()

func (*SampleIDToTileDBIDMap) ProtoReflect 

func (x *SampleIDToTileDBIDMap) ProtoReflect() protoreflect.Message

func (*SampleIDToTileDBIDMap) Reset 

func (x *SampleIDToTileDBIDMap) Reset()

func (*SampleIDToTileDBIDMap) String 

func (x *SampleIDToTileDBIDMap) String() string

type SampleIDToTileDBIDMap_Filename 

type SampleIDToTileDBIDMap_Filename struct {
	Filename string `protobuf:"bytes,5,opt,name=filename,oneof"`
}

type SampleIDToTileDBIDMap_StreamName 

type SampleIDToTileDBIDMap_StreamName struct {
	StreamName string `protobuf:"bytes,4,opt,name=stream_name,json=streamName,oneof"`
}

type SparkConfig 

type SparkConfig struct {
	QueryBlockSize       *int64 `protobuf:"varint,1,opt,name=query_block_size,json=queryBlockSize" json:"query_block_size,omitempty"`
	QueryBlockSizeMargin *int64 `protobuf:"varint,2,opt,name=query_block_size_margin,json=queryBlockSizeMargin" json:"query_block_size_margin,omitempty"`
	// contains filtered or unexported fields
}

func (*SparkConfig) Descriptor deprecated 

func (*SparkConfig) Descriptor() ([]byte, []int)

Deprecated: Use SparkConfig.ProtoReflect.Descriptor instead.

func (*SparkConfig) GetQueryBlockSize 

func (x *SparkConfig) GetQueryBlockSize() int64

func (*SparkConfig) GetQueryBlockSizeMargin 

func (x *SparkConfig) GetQueryBlockSizeMargin() int64

func (*SparkConfig) ProtoMessage 

func (*SparkConfig) ProtoMessage()

func (*SparkConfig) ProtoReflect 

func (x *SparkConfig) ProtoReflect() protoreflect.Message

func (*SparkConfig) Reset 

func (x *SparkConfig) Reset()

func (*SparkConfig) String 

func (x *SparkConfig) String() string

type TileDBColumnInterval 

type TileDBColumnInterval struct {
	Begin *int64 `protobuf:"varint,1,req,name=begin" json:"begin,omitempty"`
	End   *int64 `protobuf:"varint,2,req,name=end" json:"end,omitempty"`
	// contains filtered or unexported fields
}

func (*TileDBColumnInterval) Descriptor deprecated 

func (*TileDBColumnInterval) Descriptor() ([]byte, []int)

Deprecated: Use TileDBColumnInterval.ProtoReflect.Descriptor instead.

func (*TileDBColumnInterval) GetBegin 

func (x *TileDBColumnInterval) GetBegin() int64

func (*TileDBColumnInterval) GetEnd 

func (x *TileDBColumnInterval) GetEnd() int64

func (*TileDBColumnInterval) ProtoMessage 

func (*TileDBColumnInterval) ProtoMessage()

func (*TileDBColumnInterval) ProtoReflect 

func (x *TileDBColumnInterval) ProtoReflect() protoreflect.Message

func (*TileDBColumnInterval) Reset 

func (x *TileDBColumnInterval) Reset()

func (*TileDBColumnInterval) String 

func (x *TileDBColumnInterval) String() string

type VidMappingPB 

type VidMappingPB struct {
	Fields  []*GenomicsDBFieldInfo `protobuf:"bytes,1,rep,name=fields" json:"fields,omitempty"`
	Contigs []*Chromosome          `protobuf:"bytes,2,rep,name=contigs" json:"contigs,omitempty"`
	// contains filtered or unexported fields
}

func (*VidMappingPB) Descriptor deprecated 

func (*VidMappingPB) Descriptor() ([]byte, []int)

Deprecated: Use VidMappingPB.ProtoReflect.Descriptor instead.

func (*VidMappingPB) GetContigs 

func (x *VidMappingPB) GetContigs() []*Chromosome

func (*VidMappingPB) GetFields 

func (x *VidMappingPB) GetFields() []*GenomicsDBFieldInfo

func (*VidMappingPB) ProtoMessage 

func (*VidMappingPB) ProtoMessage()

func (*VidMappingPB) ProtoReflect 

func (x *VidMappingPB) ProtoReflect() protoreflect.Message

func (*VidMappingPB) Reset 

func (x *VidMappingPB) Reset()

func (*VidMappingPB) String 

func (x *VidMappingPB) String() string

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