cglf

README

cglf

Compact Genome Library Format

Documentation

Overview

package main

Index

• type SGLF
  • func LoadGenomeLibraryCSV(fn string) (SGLF, error)
  • func (sglf *SGLF) AddGenomeLibraryCSV(fn string) error
• type SGLFInfo

Types

type SGLF

type SGLF struct {

	// path, step, array of tiles
	//
	Lib     map[int]map[int][]string
	LibInfo map[int]map[int][]SGLFInfo

	MD5Lookup    map[string]SGLFInfo
	PfxTagLookup map[string]SGLFInfo
	SfxTagLookup map[string]SGLFInfo
}

func LoadGenomeLibraryCSV

func LoadGenomeLibraryCSV(fn string) (SGLF, error)

func (*SGLF) AddGenomeLibraryCSV

func (sglf *SGLF) AddGenomeLibraryCSV(fn string) error

type SGLFInfo

type SGLFInfo struct {
	Path    int
	Step    int
	Variant int
	Span    int
}