Directories
¶
| Path | Synopsis |
|---|---|
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Package agc reads AGC (Assembled Genomes Compressor) archives by shelling out to the upstream `agc` binary.
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Package agc reads AGC (Assembled Genomes Compressor) archives by shelling out to the upstream `agc` binary. |
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Package columns is the registry of columns available to atb query --columns.
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Package columns is the registry of columns available to atb query --columns. |
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Package extract unpacks tar archives (optionally xz- or gzip-compressed) and writes each regular file into a destination directory, optionally recompressing members with gzip or xz.
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Package extract unpacks tar archives (optionally xz- or gzip-compressed) and writes each regular file into a destination directory, optionally recompressing members with gzip or xz. |
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Package match implements SQL LIKE-style pattern matching for the Go filtering paths, so they return the same rows as the SQLite index paths.
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Package match implements SQL LIKE-style pattern matching for the Go filtering paths, so they return the same rows as the SQLite index paths. |
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Package runs maps sequencing run accessions (ERR/SRR/DRR) onto the sample accessions the rest of AllTheBacteria is keyed by.
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Package runs maps sequencing run accessions (ERR/SRR/DRR) onto the sample accessions the rest of AllTheBacteria is keyed by. |
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Package sources is the single source of truth for all external data URLs that atb downloads.
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Package sources is the single source of truth for all external data URLs that atb downloads. |
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