project

Documentation

Index

• type Distance
• type Input
• type Project
  • func ParseProject(file string) (Project, error)
  • func (project *Project) RunDist()
  • func (project *Project) RunInput()
  • func (project *Project) RunProject()
  • func (project *Project) RunTree()

Types

type Distance

type Distance struct {
	Method string `yaml: "method"`
	Output string `yaml: "output"`
}

type Input

type Input struct {
	Format  string `yaml: "format"`
	Aligned bool   `yaml: "aligned"`
	File    string `yaml: "file"`
}

type Project

type Project struct {
	Name      string       `yaml: "name"`
	Inputs    []Input      `yaml: "inputs"`
	Distances []Distance   `yaml: "distances"`
	Trees     []tree.Input `yaml: "trees"`
	Directory string
	Filepath  string
	Pools     []seq.DNAPool
	DistMats  []dist.DistMat
}

func ParseProject

func ParseProject(file string) (Project, error)

func (*Project) RunDist

func (project *Project) RunDist()

func (*Project) RunInput

func (project *Project) RunInput()

func (*Project) RunProject

func (project *Project) RunProject()

func (*Project) RunTree

func (project *Project) RunTree()