Documentation ¶
Directories ¶
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cmd
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Package depth parallelizes calls to samtools depths and outputs: 1) $prefix.callable.bed that contains collapsed per-base regions of NO/LOW/or CALLABLE coverage.
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Package depth parallelizes calls to samtools depths and outputs: 1) $prefix.callable.bed that contains collapsed per-base regions of NO/LOW/or CALLABLE coverage. |
Package depthwed combines files from goleft depth into matrices.
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Package depthwed combines files from goleft depth into matrices. |
Package emdepth uses a simplified EM algorithm to assign copy-number given a set of depths.
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Package emdepth uses a simplified EM algorithm to assign copy-number given a set of depths. |
mops
Package mops implements the EM algorithm described in the cn.mops paper.
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Package mops implements the EM algorithm described in the cn.mops paper. |
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