cmd

Documentation

Index

• Variables
• func Execute()
• func URLCmdRunOptions(cmd *cobra.Command, args []string)

Variables

var DoiCmd = &cobra.Command{
	Use:   "doi [doi1 doi2 doi3...]",
	Short: "Can be used to access files via DOI.",
	Long:  `Can be used to access files via DOI. More see here https://github.com/clindet/bget.`,
	Run: func(cmd *cobra.Command, args []string) {
		doiCmdRunOptions(cmd, args)
	},
}

var KeyCmd = &cobra.Command{
	Use:   "i [name1 name2 name3...]",
	Short: "Can be used to access URLs via a key string.",
	Long:  `Can be used to access URLs via a key string. e.g. 'item' or 'item@version #releaseVersion', : bwa, reffa-defuse@GRCh38 #97. More see here https://github.com/clindet/bget.`,
	Run: func(cmd *cobra.Command, args []string) {
		keyCmdRunOptions(cmd, args)
	},
}

KeyCmd is the cobra command object to run bget i

var SeqCmd = &cobra.Command{
	Use:   "seq [id1 id2 id3... | manifest1 manifest2 manifest3...]",
	Short: "Can be used to access sequence data via unique id (dbGAP and EGA) or manifest files (TCGA).",
	Long:  `Can be used to access sequence data via unique id or manifest files. More see here https://github.com/clindet/bget.`,
	Run: func(cmd *cobra.Command, args []string) {
		seqCmdRunOptions(cmd, args)
	},
}

var URLCmd = &cobra.Command{
	Use:   "url [url1 url2 url3...]",
	Short: "Can be used to access URLs via Golang http, wget, curl, axel and git, and rsync.",
	Long:  `Can be used to access URLs via Golang http, wget, curl, axel and git, and rsync. More see here https://github.com/clindet/bget.`,
	Run: func(cmd *cobra.Command, args []string) {
		URLCmdRunOptions(cmd, args)
	},
}

Functions

func Execute

func Execute()

Execute main interface of bget

func URLCmdRunOptions

func URLCmdRunOptions(cmd *cobra.Command, args []string)