stockcenter

Documentation

Overview

package stockcenter is the data source for stockcenter and related data

Index

• type CharacterReader
  • func NewTsvCharacterReader(r io.Reader) CharacterReader
• type Characteristics
• type Genotype
• type GenotypeReader
  • func NewTsvGenotypeReader(r io.Reader) GenotypeReader
• type Phenotype
• type PhenotypeReader
  • func NewPhenotypeReader(r io.Reader) PhenotypeReader
• type PlasmidInventory
• type PlasmidInventoryReader
  • func NewTsvPlasmidInventoryReader(r io.Reader) PlasmidInventoryReader
• type StockProp
• type StockPropReader
  • func NewTsvStockPropReader(r io.Reader) StockPropReader
• type StrainInventory
• type StrainInventoryReader
  • func NewTsvStrainInventoryReader(r io.Reader) StrainInventoryReader

Types

type CharacterReader

type CharacterReader interface {
	datasource.IteratorWithoutValue
	Value() (*Characteristics, error)
}

CharacterReader is the defined interface for reading the data

func NewTsvCharacterReader

func NewTsvCharacterReader(r io.Reader) CharacterReader

NewTsvCharacterReader is to get an instance of character reader

type Characteristics

type Characteristics struct {
	Id        string
	Character string
}

Characteristics is the container for strain characteristics

type Genotype

type Genotype struct {
	Id       string
	StrainId string
	Genotype string
}

Genotype is the container for strain genotype

type GenotypeReader

type GenotypeReader interface {
	datasource.IteratorWithoutValue
	Value() (*Genotype, error)
}

GenotypeReader is the defined interface for reading the data

func NewTsvGenotypeReader

func NewTsvGenotypeReader(r io.Reader) GenotypeReader

NewTsvGenotypeReader is to get an instance of GenotypeReader

type Phenotype

type Phenotype struct {
	StrainID     string
	Observation  string
	Environment  string
	Assay        string
	Note         string
	LiteratureID string
}

Phenotype is the container for strain phenotype

type PhenotypeReader

type PhenotypeReader interface {
	datasource.IteratorWithoutValue
	Value() (*Phenotype, error)
}

PhenotypeReader is the defined interface for reading the data

func NewPhenotypeReader

func NewPhenotypeReader(r io.Reader) PhenotypeReader

NewPhenotypeReader is to get an instance of PhenotypeReader

type PlasmidInventory

type PlasmidInventory struct {
	PlasmidID        string
	PrivateComment   string
	StoredOn         time.Time
	PhysicalLocation string
	StoredAs         string
	ObtainedAs       string
	RecordLine       string
}

PlasmidInventory is the container for plasmid inventory

type PlasmidInventoryReader

type PlasmidInventoryReader interface {
	datasource.IteratorWithoutValue
	Value() (*PlasmidInventory, error)
}

PlasmidInventoryReader is the defined interface for reading the data

func NewTsvPlasmidInventoryReader

func NewTsvPlasmidInventoryReader(r io.Reader) PlasmidInventoryReader

NewTsvPlasmidInventoryReader is to get an instance of PlasmidInventoryReader

type StockProp

type StockProp struct {
	Id       string
	Property string
	Value    string
}

StockProp is the container for stock properties

type StockPropReader

type StockPropReader interface {
	datasource.IteratorWithoutValue
	Value() (*StockProp, error)
}

StockPropReader is the defined interface for reading the data

func NewTsvStockPropReader

func NewTsvStockPropReader(r io.Reader) StockPropReader

NewTsvStockPropReader is to get an instance of StockPropReader

type StrainInventory

type StrainInventory struct {
	StrainID         string
	PrivateComment   string
	PublicComment    string
	StoredOn         time.Time
	StoredAs         string
	VialsCount       string
	VialColor        string
	PhysicalLocation string
	RecordLine       string
}

StrainInventory is the container for strain inventory

type StrainInventoryReader

type StrainInventoryReader interface {
	datasource.IteratorWithoutValue
	Value() (*StrainInventory, error)
}

StrainInventoryReader is the defined interface for reading the data

func NewTsvStrainInventoryReader

func NewTsvStrainInventoryReader(r io.Reader) StrainInventoryReader

NewTsvStrainInventoryReader is to get an instance of StrainInventoryReader