golgi

module
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Published: Sep 14, 2021 License: MIT

README

Golgi

Go Reference Go Report Card

Pure Go libraries for handling biological data. Emphasis on minimalism and efficiency.

Feedback? Suggestions? Requests? Questions? Let me know!

Package Overview

  • Data formats
  • Nucleotide & amino-acid sequence utilities
  • Algorithms & data structures
    • trie a prefix tree for sequence lookups
    • regions an index for interval (genes, etc.) overlap lookup

Directories

Path Synopsis
formats
bed
Package bed parses BED files.
Package bed parses BED files.
fasta
Package fasta parses fasta files.
Package fasta parses fasta files.
fasta/fastaserver command
Command fastaserver is a server that serves sequences from a fasta file.
Command fastaserver is a server that serves sequences from a fasta file.
fastq
Package fastq parses fastq files.
Package fastq parses fastq files.
sam
Package sam parses SAM files.
Package sam parses SAM files.
Package regions provides an index for searching on intervals.
Package regions provides an index for searching on intervals.
Package sequtil provides functions for processing genetic sequences.
Package sequtil provides functions for processing genetic sequences.
Package trie provides a prefix tree implementation.
Package trie provides a prefix tree implementation.

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