Documentation ¶
Index ¶
- Variables
- type MolecularSequence
- func (*MolecularSequence) Descriptor() ([]byte, []int)deprecated
- func (x *MolecularSequence) GetContained() []*any.Any
- func (x *MolecularSequence) GetCoordinateSystem() *datatypes_go_proto.Integer
- func (x *MolecularSequence) GetDevice() *datatypes_go_proto.Reference
- func (x *MolecularSequence) GetExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence) GetId() *datatypes_go_proto.Id
- func (x *MolecularSequence) GetIdentifier() []*datatypes_go_proto.Identifier
- func (x *MolecularSequence) GetImplicitRules() *datatypes_go_proto.Uri
- func (x *MolecularSequence) GetLanguage() *datatypes_go_proto.Code
- func (x *MolecularSequence) GetMeta() *datatypes_go_proto.Meta
- func (x *MolecularSequence) GetModifierExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence) GetObservedSeq() *datatypes_go_proto.String
- func (x *MolecularSequence) GetPatient() *datatypes_go_proto.Reference
- func (x *MolecularSequence) GetPerformer() *datatypes_go_proto.Reference
- func (x *MolecularSequence) GetPointer() []*datatypes_go_proto.Reference
- func (x *MolecularSequence) GetQuality() []*MolecularSequence_Quality
- func (x *MolecularSequence) GetQuantity() *datatypes_go_proto.Quantity
- func (x *MolecularSequence) GetReadCoverage() *datatypes_go_proto.Integer
- func (x *MolecularSequence) GetReferenceSeq() *MolecularSequence_ReferenceSeq
- func (x *MolecularSequence) GetRepository() []*MolecularSequence_Repository
- func (x *MolecularSequence) GetSpecimen() *datatypes_go_proto.Reference
- func (x *MolecularSequence) GetStructureVariant() []*MolecularSequence_StructureVariant
- func (x *MolecularSequence) GetText() *datatypes_go_proto.Narrative
- func (x *MolecularSequence) GetType() *MolecularSequence_TypeCode
- func (x *MolecularSequence) GetVariant() []*MolecularSequence_Variant
- func (*MolecularSequence) ProtoMessage()
- func (x *MolecularSequence) ProtoReflect() protoreflect.Message
- func (x *MolecularSequence) Reset()
- func (x *MolecularSequence) String() string
- type MolecularSequence_Quality
- func (*MolecularSequence_Quality) Descriptor() ([]byte, []int)deprecated
- func (x *MolecularSequence_Quality) GetEnd() *datatypes_go_proto.Integer
- func (x *MolecularSequence_Quality) GetExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_Quality) GetFScore() *datatypes_go_proto.Decimal
- func (x *MolecularSequence_Quality) GetGtFp() *datatypes_go_proto.Decimal
- func (x *MolecularSequence_Quality) GetId() *datatypes_go_proto.Id
- func (x *MolecularSequence_Quality) GetMethod() *datatypes_go_proto.CodeableConcept
- func (x *MolecularSequence_Quality) GetModifierExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_Quality) GetPrecision() *datatypes_go_proto.Decimal
- func (x *MolecularSequence_Quality) GetQueryFp() *datatypes_go_proto.Decimal
- func (x *MolecularSequence_Quality) GetQueryTp() *datatypes_go_proto.Decimal
- func (x *MolecularSequence_Quality) GetRecall() *datatypes_go_proto.Decimal
- func (x *MolecularSequence_Quality) GetRoc() *MolecularSequence_Quality_Roc
- func (x *MolecularSequence_Quality) GetScore() *datatypes_go_proto.Quantity
- func (x *MolecularSequence_Quality) GetStandardSequence() *datatypes_go_proto.CodeableConcept
- func (x *MolecularSequence_Quality) GetStart() *datatypes_go_proto.Integer
- func (x *MolecularSequence_Quality) GetTruthFn() *datatypes_go_proto.Decimal
- func (x *MolecularSequence_Quality) GetTruthTp() *datatypes_go_proto.Decimal
- func (x *MolecularSequence_Quality) GetType() *MolecularSequence_Quality_TypeCode
- func (*MolecularSequence_Quality) ProtoMessage()
- func (x *MolecularSequence_Quality) ProtoReflect() protoreflect.Message
- func (x *MolecularSequence_Quality) Reset()
- func (x *MolecularSequence_Quality) String() string
- type MolecularSequence_Quality_Roc
- func (*MolecularSequence_Quality_Roc) Descriptor() ([]byte, []int)deprecated
- func (x *MolecularSequence_Quality_Roc) GetExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_Quality_Roc) GetFMeasure() []*datatypes_go_proto.Decimal
- func (x *MolecularSequence_Quality_Roc) GetId() *datatypes_go_proto.Id
- func (x *MolecularSequence_Quality_Roc) GetModifierExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_Quality_Roc) GetNumFn() []*datatypes_go_proto.Integer
- func (x *MolecularSequence_Quality_Roc) GetNumFp() []*datatypes_go_proto.Integer
- func (x *MolecularSequence_Quality_Roc) GetNumTp() []*datatypes_go_proto.Integer
- func (x *MolecularSequence_Quality_Roc) GetPrecision() []*datatypes_go_proto.Decimal
- func (x *MolecularSequence_Quality_Roc) GetScore() []*datatypes_go_proto.Integer
- func (x *MolecularSequence_Quality_Roc) GetSensitivity() []*datatypes_go_proto.Decimal
- func (*MolecularSequence_Quality_Roc) ProtoMessage()
- func (x *MolecularSequence_Quality_Roc) ProtoReflect() protoreflect.Message
- func (x *MolecularSequence_Quality_Roc) Reset()
- func (x *MolecularSequence_Quality_Roc) String() string
- type MolecularSequence_Quality_TypeCode
- func (*MolecularSequence_Quality_TypeCode) Descriptor() ([]byte, []int)deprecated
- func (x *MolecularSequence_Quality_TypeCode) GetExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_Quality_TypeCode) GetId() *datatypes_go_proto.String
- func (x *MolecularSequence_Quality_TypeCode) GetValue() codes_go_proto.QualityTypeCode_Value
- func (*MolecularSequence_Quality_TypeCode) ProtoMessage()
- func (x *MolecularSequence_Quality_TypeCode) ProtoReflect() protoreflect.Message
- func (x *MolecularSequence_Quality_TypeCode) Reset()
- func (x *MolecularSequence_Quality_TypeCode) String() string
- type MolecularSequence_ReferenceSeq
- func (*MolecularSequence_ReferenceSeq) Descriptor() ([]byte, []int)deprecated
- func (x *MolecularSequence_ReferenceSeq) GetChromosome() *datatypes_go_proto.CodeableConcept
- func (x *MolecularSequence_ReferenceSeq) GetExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_ReferenceSeq) GetGenomeBuild() *datatypes_go_proto.String
- func (x *MolecularSequence_ReferenceSeq) GetId() *datatypes_go_proto.Id
- func (x *MolecularSequence_ReferenceSeq) GetModifierExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_ReferenceSeq) GetOrientation() *MolecularSequence_ReferenceSeq_OrientationCode
- func (x *MolecularSequence_ReferenceSeq) GetReferenceSeqId() *datatypes_go_proto.CodeableConcept
- func (x *MolecularSequence_ReferenceSeq) GetReferenceSeqPointer() *datatypes_go_proto.Reference
- func (x *MolecularSequence_ReferenceSeq) GetReferenceSeqString() *datatypes_go_proto.String
- func (x *MolecularSequence_ReferenceSeq) GetStrand() *MolecularSequence_ReferenceSeq_StrandCode
- func (x *MolecularSequence_ReferenceSeq) GetWindowEnd() *datatypes_go_proto.Integer
- func (x *MolecularSequence_ReferenceSeq) GetWindowStart() *datatypes_go_proto.Integer
- func (*MolecularSequence_ReferenceSeq) ProtoMessage()
- func (x *MolecularSequence_ReferenceSeq) ProtoReflect() protoreflect.Message
- func (x *MolecularSequence_ReferenceSeq) Reset()
- func (x *MolecularSequence_ReferenceSeq) String() string
- type MolecularSequence_ReferenceSeq_OrientationCode
- func (*MolecularSequence_ReferenceSeq_OrientationCode) Descriptor() ([]byte, []int)deprecated
- func (x *MolecularSequence_ReferenceSeq_OrientationCode) GetExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_ReferenceSeq_OrientationCode) GetId() *datatypes_go_proto.String
- func (x *MolecularSequence_ReferenceSeq_OrientationCode) GetValue() codes_go_proto.OrientationTypeCode_Value
- func (*MolecularSequence_ReferenceSeq_OrientationCode) ProtoMessage()
- func (x *MolecularSequence_ReferenceSeq_OrientationCode) ProtoReflect() protoreflect.Message
- func (x *MolecularSequence_ReferenceSeq_OrientationCode) Reset()
- func (x *MolecularSequence_ReferenceSeq_OrientationCode) String() string
- type MolecularSequence_ReferenceSeq_StrandCode
- func (*MolecularSequence_ReferenceSeq_StrandCode) Descriptor() ([]byte, []int)deprecated
- func (x *MolecularSequence_ReferenceSeq_StrandCode) GetExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_ReferenceSeq_StrandCode) GetId() *datatypes_go_proto.String
- func (x *MolecularSequence_ReferenceSeq_StrandCode) GetValue() codes_go_proto.StrandTypeCode_Value
- func (*MolecularSequence_ReferenceSeq_StrandCode) ProtoMessage()
- func (x *MolecularSequence_ReferenceSeq_StrandCode) ProtoReflect() protoreflect.Message
- func (x *MolecularSequence_ReferenceSeq_StrandCode) Reset()
- func (x *MolecularSequence_ReferenceSeq_StrandCode) String() string
- type MolecularSequence_Repository
- func (*MolecularSequence_Repository) Descriptor() ([]byte, []int)deprecated
- func (x *MolecularSequence_Repository) GetDatasetId() *datatypes_go_proto.String
- func (x *MolecularSequence_Repository) GetExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_Repository) GetId() *datatypes_go_proto.Id
- func (x *MolecularSequence_Repository) GetModifierExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_Repository) GetName() *datatypes_go_proto.String
- func (x *MolecularSequence_Repository) GetReadsetId() *datatypes_go_proto.String
- func (x *MolecularSequence_Repository) GetType() *MolecularSequence_Repository_TypeCode
- func (x *MolecularSequence_Repository) GetUrl() *datatypes_go_proto.Uri
- func (x *MolecularSequence_Repository) GetVariantsetId() *datatypes_go_proto.String
- func (*MolecularSequence_Repository) ProtoMessage()
- func (x *MolecularSequence_Repository) ProtoReflect() protoreflect.Message
- func (x *MolecularSequence_Repository) Reset()
- func (x *MolecularSequence_Repository) String() string
- type MolecularSequence_Repository_TypeCode
- func (*MolecularSequence_Repository_TypeCode) Descriptor() ([]byte, []int)deprecated
- func (x *MolecularSequence_Repository_TypeCode) GetExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_Repository_TypeCode) GetId() *datatypes_go_proto.String
- func (x *MolecularSequence_Repository_TypeCode) GetValue() codes_go_proto.RepositoryTypeCode_Value
- func (*MolecularSequence_Repository_TypeCode) ProtoMessage()
- func (x *MolecularSequence_Repository_TypeCode) ProtoReflect() protoreflect.Message
- func (x *MolecularSequence_Repository_TypeCode) Reset()
- func (x *MolecularSequence_Repository_TypeCode) String() string
- type MolecularSequence_StructureVariant
- func (*MolecularSequence_StructureVariant) Descriptor() ([]byte, []int)deprecated
- func (x *MolecularSequence_StructureVariant) GetExact() *datatypes_go_proto.Boolean
- func (x *MolecularSequence_StructureVariant) GetExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_StructureVariant) GetId() *datatypes_go_proto.Id
- func (x *MolecularSequence_StructureVariant) GetInner() *MolecularSequence_StructureVariant_Inner
- func (x *MolecularSequence_StructureVariant) GetLength() *datatypes_go_proto.Integer
- func (x *MolecularSequence_StructureVariant) GetModifierExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_StructureVariant) GetOuter() *MolecularSequence_StructureVariant_Outer
- func (x *MolecularSequence_StructureVariant) GetVariantType() *datatypes_go_proto.CodeableConcept
- func (*MolecularSequence_StructureVariant) ProtoMessage()
- func (x *MolecularSequence_StructureVariant) ProtoReflect() protoreflect.Message
- func (x *MolecularSequence_StructureVariant) Reset()
- func (x *MolecularSequence_StructureVariant) String() string
- type MolecularSequence_StructureVariant_Inner
- func (*MolecularSequence_StructureVariant_Inner) Descriptor() ([]byte, []int)deprecated
- func (x *MolecularSequence_StructureVariant_Inner) GetEnd() *datatypes_go_proto.Integer
- func (x *MolecularSequence_StructureVariant_Inner) GetExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_StructureVariant_Inner) GetId() *datatypes_go_proto.Id
- func (x *MolecularSequence_StructureVariant_Inner) GetModifierExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_StructureVariant_Inner) GetStart() *datatypes_go_proto.Integer
- func (*MolecularSequence_StructureVariant_Inner) ProtoMessage()
- func (x *MolecularSequence_StructureVariant_Inner) ProtoReflect() protoreflect.Message
- func (x *MolecularSequence_StructureVariant_Inner) Reset()
- func (x *MolecularSequence_StructureVariant_Inner) String() string
- type MolecularSequence_StructureVariant_Outer
- func (*MolecularSequence_StructureVariant_Outer) Descriptor() ([]byte, []int)deprecated
- func (x *MolecularSequence_StructureVariant_Outer) GetEnd() *datatypes_go_proto.Integer
- func (x *MolecularSequence_StructureVariant_Outer) GetExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_StructureVariant_Outer) GetId() *datatypes_go_proto.Id
- func (x *MolecularSequence_StructureVariant_Outer) GetModifierExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_StructureVariant_Outer) GetStart() *datatypes_go_proto.Integer
- func (*MolecularSequence_StructureVariant_Outer) ProtoMessage()
- func (x *MolecularSequence_StructureVariant_Outer) ProtoReflect() protoreflect.Message
- func (x *MolecularSequence_StructureVariant_Outer) Reset()
- func (x *MolecularSequence_StructureVariant_Outer) String() string
- type MolecularSequence_TypeCode
- func (*MolecularSequence_TypeCode) Descriptor() ([]byte, []int)deprecated
- func (x *MolecularSequence_TypeCode) GetExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_TypeCode) GetId() *datatypes_go_proto.String
- func (x *MolecularSequence_TypeCode) GetValue() codes_go_proto.SequenceTypeCode_Value
- func (*MolecularSequence_TypeCode) ProtoMessage()
- func (x *MolecularSequence_TypeCode) ProtoReflect() protoreflect.Message
- func (x *MolecularSequence_TypeCode) Reset()
- func (x *MolecularSequence_TypeCode) String() string
- type MolecularSequence_Variant
- func (*MolecularSequence_Variant) Descriptor() ([]byte, []int)deprecated
- func (x *MolecularSequence_Variant) GetCigar() *datatypes_go_proto.String
- func (x *MolecularSequence_Variant) GetEnd() *datatypes_go_proto.Integer
- func (x *MolecularSequence_Variant) GetExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_Variant) GetId() *datatypes_go_proto.Id
- func (x *MolecularSequence_Variant) GetModifierExtension() []*datatypes_go_proto.Extension
- func (x *MolecularSequence_Variant) GetObservedAllele() *datatypes_go_proto.String
- func (x *MolecularSequence_Variant) GetReferenceAllele() *datatypes_go_proto.String
- func (x *MolecularSequence_Variant) GetStart() *datatypes_go_proto.Integer
- func (x *MolecularSequence_Variant) GetVariantPointer() *datatypes_go_proto.Reference
- func (*MolecularSequence_Variant) ProtoMessage()
- func (x *MolecularSequence_Variant) ProtoReflect() protoreflect.Message
- func (x *MolecularSequence_Variant) Reset()
- func (x *MolecularSequence_Variant) String() string
Constants ¶
This section is empty.
Variables ¶
var File_proto_google_fhir_proto_r5_core_resources_molecular_sequence_proto protoreflect.FileDescriptor
Functions ¶
This section is empty.
Types ¶
type MolecularSequence ¶
type MolecularSequence struct { // Logical id of this artifact Id *datatypes_go_proto.Id `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"` // Metadata about the resource Meta *datatypes_go_proto.Meta `protobuf:"bytes,2,opt,name=meta,proto3" json:"meta,omitempty"` // A set of rules under which this content was created ImplicitRules *datatypes_go_proto.Uri `protobuf:"bytes,3,opt,name=implicit_rules,json=implicitRules,proto3" json:"implicit_rules,omitempty"` // Language of the resource content Language *datatypes_go_proto.Code `protobuf:"bytes,4,opt,name=language,proto3" json:"language,omitempty"` // Text summary of the resource, for human interpretation Text *datatypes_go_proto.Narrative `protobuf:"bytes,5,opt,name=text,proto3" json:"text,omitempty"` // Contained, inline Resources Contained []*any.Any `protobuf:"bytes,6,rep,name=contained,proto3" json:"contained,omitempty"` // Additional content defined by implementations Extension []*datatypes_go_proto.Extension `protobuf:"bytes,8,rep,name=extension,proto3" json:"extension,omitempty"` // Extensions that cannot be ignored ModifierExtension []*datatypes_go_proto.Extension `protobuf:"bytes,9,rep,name=modifier_extension,json=modifierExtension,proto3" json:"modifier_extension,omitempty"` // Unique ID for this particular sequence. This is a FHIR-defined id Identifier []*datatypes_go_proto.Identifier `protobuf:"bytes,10,rep,name=identifier,proto3" json:"identifier,omitempty"` Type *MolecularSequence_TypeCode `protobuf:"bytes,11,opt,name=type,proto3" json:"type,omitempty"` // Base number of coordinate system (0 for 0-based numbering or coordinates, // inclusive start, exclusive end, 1 for 1-based numbering, inclusive start, // inclusive end) CoordinateSystem *datatypes_go_proto.Integer `protobuf:"bytes,12,opt,name=coordinate_system,json=coordinateSystem,proto3" json:"coordinate_system,omitempty"` // Who and/or what this is about Patient *datatypes_go_proto.Reference `protobuf:"bytes,13,opt,name=patient,proto3" json:"patient,omitempty"` // Specimen used for sequencing Specimen *datatypes_go_proto.Reference `protobuf:"bytes,14,opt,name=specimen,proto3" json:"specimen,omitempty"` // The method for sequencing Device *datatypes_go_proto.Reference `protobuf:"bytes,15,opt,name=device,proto3" json:"device,omitempty"` // Who should be responsible for test result Performer *datatypes_go_proto.Reference `protobuf:"bytes,16,opt,name=performer,proto3" json:"performer,omitempty"` // The number of copies of the sequence of interest. (RNASeq) Quantity *datatypes_go_proto.Quantity `protobuf:"bytes,17,opt,name=quantity,proto3" json:"quantity,omitempty"` ReferenceSeq *MolecularSequence_ReferenceSeq `protobuf:"bytes,18,opt,name=reference_seq,json=referenceSeq,proto3" json:"reference_seq,omitempty"` Variant []*MolecularSequence_Variant `protobuf:"bytes,19,rep,name=variant,proto3" json:"variant,omitempty"` // Sequence that was observed ObservedSeq *datatypes_go_proto.String `protobuf:"bytes,20,opt,name=observed_seq,json=observedSeq,proto3" json:"observed_seq,omitempty"` Quality []*MolecularSequence_Quality `protobuf:"bytes,21,rep,name=quality,proto3" json:"quality,omitempty"` // Average number of reads representing a given nucleotide in the // reconstructed sequence ReadCoverage *datatypes_go_proto.Integer `protobuf:"bytes,22,opt,name=read_coverage,json=readCoverage,proto3" json:"read_coverage,omitempty"` Repository []*MolecularSequence_Repository `protobuf:"bytes,23,rep,name=repository,proto3" json:"repository,omitempty"` // Pointer to next atomic sequence Pointer []*datatypes_go_proto.Reference `protobuf:"bytes,24,rep,name=pointer,proto3" json:"pointer,omitempty"` StructureVariant []*MolecularSequence_StructureVariant `protobuf:"bytes,25,rep,name=structure_variant,json=structureVariant,proto3" json:"structure_variant,omitempty"` // contains filtered or unexported fields }
Auto-generated from StructureDefinition for MolecularSequence, last updated 2019-12-31T21:03:40.621+11:00. Information about a biological sequence. See http://hl7.org/fhir/StructureDefinition/MolecularSequence
func (*MolecularSequence) Descriptor
deprecated
func (*MolecularSequence) Descriptor() ([]byte, []int)
Deprecated: Use MolecularSequence.ProtoReflect.Descriptor instead.
func (*MolecularSequence) GetContained ¶
func (x *MolecularSequence) GetContained() []*any.Any
func (*MolecularSequence) GetCoordinateSystem ¶
func (x *MolecularSequence) GetCoordinateSystem() *datatypes_go_proto.Integer
func (*MolecularSequence) GetDevice ¶
func (x *MolecularSequence) GetDevice() *datatypes_go_proto.Reference
func (*MolecularSequence) GetExtension ¶
func (x *MolecularSequence) GetExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence) GetId ¶
func (x *MolecularSequence) GetId() *datatypes_go_proto.Id
func (*MolecularSequence) GetIdentifier ¶
func (x *MolecularSequence) GetIdentifier() []*datatypes_go_proto.Identifier
func (*MolecularSequence) GetImplicitRules ¶
func (x *MolecularSequence) GetImplicitRules() *datatypes_go_proto.Uri
func (*MolecularSequence) GetLanguage ¶
func (x *MolecularSequence) GetLanguage() *datatypes_go_proto.Code
func (*MolecularSequence) GetMeta ¶
func (x *MolecularSequence) GetMeta() *datatypes_go_proto.Meta
func (*MolecularSequence) GetModifierExtension ¶
func (x *MolecularSequence) GetModifierExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence) GetObservedSeq ¶
func (x *MolecularSequence) GetObservedSeq() *datatypes_go_proto.String
func (*MolecularSequence) GetPatient ¶
func (x *MolecularSequence) GetPatient() *datatypes_go_proto.Reference
func (*MolecularSequence) GetPerformer ¶
func (x *MolecularSequence) GetPerformer() *datatypes_go_proto.Reference
func (*MolecularSequence) GetPointer ¶
func (x *MolecularSequence) GetPointer() []*datatypes_go_proto.Reference
func (*MolecularSequence) GetQuality ¶
func (x *MolecularSequence) GetQuality() []*MolecularSequence_Quality
func (*MolecularSequence) GetQuantity ¶
func (x *MolecularSequence) GetQuantity() *datatypes_go_proto.Quantity
func (*MolecularSequence) GetReadCoverage ¶
func (x *MolecularSequence) GetReadCoverage() *datatypes_go_proto.Integer
func (*MolecularSequence) GetReferenceSeq ¶
func (x *MolecularSequence) GetReferenceSeq() *MolecularSequence_ReferenceSeq
func (*MolecularSequence) GetRepository ¶
func (x *MolecularSequence) GetRepository() []*MolecularSequence_Repository
func (*MolecularSequence) GetSpecimen ¶
func (x *MolecularSequence) GetSpecimen() *datatypes_go_proto.Reference
func (*MolecularSequence) GetStructureVariant ¶
func (x *MolecularSequence) GetStructureVariant() []*MolecularSequence_StructureVariant
func (*MolecularSequence) GetText ¶
func (x *MolecularSequence) GetText() *datatypes_go_proto.Narrative
func (*MolecularSequence) GetType ¶
func (x *MolecularSequence) GetType() *MolecularSequence_TypeCode
func (*MolecularSequence) GetVariant ¶
func (x *MolecularSequence) GetVariant() []*MolecularSequence_Variant
func (*MolecularSequence) ProtoMessage ¶
func (*MolecularSequence) ProtoMessage()
func (*MolecularSequence) ProtoReflect ¶
func (x *MolecularSequence) ProtoReflect() protoreflect.Message
func (*MolecularSequence) Reset ¶
func (x *MolecularSequence) Reset()
func (*MolecularSequence) String ¶
func (x *MolecularSequence) String() string
type MolecularSequence_Quality ¶
type MolecularSequence_Quality struct { // Unique id for inter-element referencing Id *datatypes_go_proto.Id `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"` // Additional content defined by implementations Extension []*datatypes_go_proto.Extension `protobuf:"bytes,2,rep,name=extension,proto3" json:"extension,omitempty"` // Extensions that cannot be ignored even if unrecognized ModifierExtension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=modifier_extension,json=modifierExtension,proto3" json:"modifier_extension,omitempty"` Type *MolecularSequence_Quality_TypeCode `protobuf:"bytes,4,opt,name=type,proto3" json:"type,omitempty"` // Standard sequence for comparison StandardSequence *datatypes_go_proto.CodeableConcept `protobuf:"bytes,5,opt,name=standard_sequence,json=standardSequence,proto3" json:"standard_sequence,omitempty"` // Start position of the sequence Start *datatypes_go_proto.Integer `protobuf:"bytes,6,opt,name=start,proto3" json:"start,omitempty"` // End position of the sequence End *datatypes_go_proto.Integer `protobuf:"bytes,7,opt,name=end,proto3" json:"end,omitempty"` // Quality score for the comparison Score *datatypes_go_proto.Quantity `protobuf:"bytes,8,opt,name=score,proto3" json:"score,omitempty"` // Method to get quality Method *datatypes_go_proto.CodeableConcept `protobuf:"bytes,9,opt,name=method,proto3" json:"method,omitempty"` // True positives from the perspective of the truth data TruthTp *datatypes_go_proto.Decimal `protobuf:"bytes,10,opt,name=truth_tp,json=truthTP,proto3" json:"truth_tp,omitempty"` // True positives from the perspective of the query data QueryTp *datatypes_go_proto.Decimal `protobuf:"bytes,11,opt,name=query_tp,json=queryTP,proto3" json:"query_tp,omitempty"` // False negatives TruthFn *datatypes_go_proto.Decimal `protobuf:"bytes,12,opt,name=truth_fn,json=truthFN,proto3" json:"truth_fn,omitempty"` // False positives QueryFp *datatypes_go_proto.Decimal `protobuf:"bytes,13,opt,name=query_fp,json=queryFP,proto3" json:"query_fp,omitempty"` // False positives where the non-REF alleles in the Truth and Query Call // Sets match GtFp *datatypes_go_proto.Decimal `protobuf:"bytes,14,opt,name=gt_fp,json=gtFP,proto3" json:"gt_fp,omitempty"` // Precision of comparison Precision *datatypes_go_proto.Decimal `protobuf:"bytes,15,opt,name=precision,proto3" json:"precision,omitempty"` // Recall of comparison Recall *datatypes_go_proto.Decimal `protobuf:"bytes,16,opt,name=recall,proto3" json:"recall,omitempty"` // F-score FScore *datatypes_go_proto.Decimal `protobuf:"bytes,17,opt,name=f_score,json=fScore,proto3" json:"f_score,omitempty"` Roc *MolecularSequence_Quality_Roc `protobuf:"bytes,18,opt,name=roc,proto3" json:"roc,omitempty"` // contains filtered or unexported fields }
An set of value as quality of sequence
func (*MolecularSequence_Quality) Descriptor
deprecated
func (*MolecularSequence_Quality) Descriptor() ([]byte, []int)
Deprecated: Use MolecularSequence_Quality.ProtoReflect.Descriptor instead.
func (*MolecularSequence_Quality) GetEnd ¶
func (x *MolecularSequence_Quality) GetEnd() *datatypes_go_proto.Integer
func (*MolecularSequence_Quality) GetExtension ¶
func (x *MolecularSequence_Quality) GetExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_Quality) GetFScore ¶
func (x *MolecularSequence_Quality) GetFScore() *datatypes_go_proto.Decimal
func (*MolecularSequence_Quality) GetGtFp ¶
func (x *MolecularSequence_Quality) GetGtFp() *datatypes_go_proto.Decimal
func (*MolecularSequence_Quality) GetId ¶
func (x *MolecularSequence_Quality) GetId() *datatypes_go_proto.Id
func (*MolecularSequence_Quality) GetMethod ¶
func (x *MolecularSequence_Quality) GetMethod() *datatypes_go_proto.CodeableConcept
func (*MolecularSequence_Quality) GetModifierExtension ¶
func (x *MolecularSequence_Quality) GetModifierExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_Quality) GetPrecision ¶
func (x *MolecularSequence_Quality) GetPrecision() *datatypes_go_proto.Decimal
func (*MolecularSequence_Quality) GetQueryFp ¶
func (x *MolecularSequence_Quality) GetQueryFp() *datatypes_go_proto.Decimal
func (*MolecularSequence_Quality) GetQueryTp ¶
func (x *MolecularSequence_Quality) GetQueryTp() *datatypes_go_proto.Decimal
func (*MolecularSequence_Quality) GetRecall ¶
func (x *MolecularSequence_Quality) GetRecall() *datatypes_go_proto.Decimal
func (*MolecularSequence_Quality) GetRoc ¶
func (x *MolecularSequence_Quality) GetRoc() *MolecularSequence_Quality_Roc
func (*MolecularSequence_Quality) GetScore ¶
func (x *MolecularSequence_Quality) GetScore() *datatypes_go_proto.Quantity
func (*MolecularSequence_Quality) GetStandardSequence ¶
func (x *MolecularSequence_Quality) GetStandardSequence() *datatypes_go_proto.CodeableConcept
func (*MolecularSequence_Quality) GetStart ¶
func (x *MolecularSequence_Quality) GetStart() *datatypes_go_proto.Integer
func (*MolecularSequence_Quality) GetTruthFn ¶
func (x *MolecularSequence_Quality) GetTruthFn() *datatypes_go_proto.Decimal
func (*MolecularSequence_Quality) GetTruthTp ¶
func (x *MolecularSequence_Quality) GetTruthTp() *datatypes_go_proto.Decimal
func (*MolecularSequence_Quality) GetType ¶
func (x *MolecularSequence_Quality) GetType() *MolecularSequence_Quality_TypeCode
func (*MolecularSequence_Quality) ProtoMessage ¶
func (*MolecularSequence_Quality) ProtoMessage()
func (*MolecularSequence_Quality) ProtoReflect ¶
func (x *MolecularSequence_Quality) ProtoReflect() protoreflect.Message
func (*MolecularSequence_Quality) Reset ¶
func (x *MolecularSequence_Quality) Reset()
func (*MolecularSequence_Quality) String ¶
func (x *MolecularSequence_Quality) String() string
type MolecularSequence_Quality_Roc ¶
type MolecularSequence_Quality_Roc struct { // Unique id for inter-element referencing Id *datatypes_go_proto.Id `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"` // Additional content defined by implementations Extension []*datatypes_go_proto.Extension `protobuf:"bytes,2,rep,name=extension,proto3" json:"extension,omitempty"` // Extensions that cannot be ignored even if unrecognized ModifierExtension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=modifier_extension,json=modifierExtension,proto3" json:"modifier_extension,omitempty"` // Genotype quality score Score []*datatypes_go_proto.Integer `protobuf:"bytes,4,rep,name=score,proto3" json:"score,omitempty"` // Roc score true positive numbers NumTp []*datatypes_go_proto.Integer `protobuf:"bytes,5,rep,name=num_tp,json=numTP,proto3" json:"num_tp,omitempty"` // Roc score false positive numbers NumFp []*datatypes_go_proto.Integer `protobuf:"bytes,6,rep,name=num_fp,json=numFP,proto3" json:"num_fp,omitempty"` // Roc score false negative numbers NumFn []*datatypes_go_proto.Integer `protobuf:"bytes,7,rep,name=num_fn,json=numFN,proto3" json:"num_fn,omitempty"` // Precision of the GQ score Precision []*datatypes_go_proto.Decimal `protobuf:"bytes,8,rep,name=precision,proto3" json:"precision,omitempty"` // Sensitivity of the GQ score Sensitivity []*datatypes_go_proto.Decimal `protobuf:"bytes,9,rep,name=sensitivity,proto3" json:"sensitivity,omitempty"` // FScore of the GQ score FMeasure []*datatypes_go_proto.Decimal `protobuf:"bytes,10,rep,name=f_measure,json=fMeasure,proto3" json:"f_measure,omitempty"` // contains filtered or unexported fields }
Receiver Operator Characteristic (ROC) Curve
func (*MolecularSequence_Quality_Roc) Descriptor
deprecated
func (*MolecularSequence_Quality_Roc) Descriptor() ([]byte, []int)
Deprecated: Use MolecularSequence_Quality_Roc.ProtoReflect.Descriptor instead.
func (*MolecularSequence_Quality_Roc) GetExtension ¶
func (x *MolecularSequence_Quality_Roc) GetExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_Quality_Roc) GetFMeasure ¶
func (x *MolecularSequence_Quality_Roc) GetFMeasure() []*datatypes_go_proto.Decimal
func (*MolecularSequence_Quality_Roc) GetId ¶
func (x *MolecularSequence_Quality_Roc) GetId() *datatypes_go_proto.Id
func (*MolecularSequence_Quality_Roc) GetModifierExtension ¶
func (x *MolecularSequence_Quality_Roc) GetModifierExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_Quality_Roc) GetNumFn ¶
func (x *MolecularSequence_Quality_Roc) GetNumFn() []*datatypes_go_proto.Integer
func (*MolecularSequence_Quality_Roc) GetNumFp ¶
func (x *MolecularSequence_Quality_Roc) GetNumFp() []*datatypes_go_proto.Integer
func (*MolecularSequence_Quality_Roc) GetNumTp ¶
func (x *MolecularSequence_Quality_Roc) GetNumTp() []*datatypes_go_proto.Integer
func (*MolecularSequence_Quality_Roc) GetPrecision ¶
func (x *MolecularSequence_Quality_Roc) GetPrecision() []*datatypes_go_proto.Decimal
func (*MolecularSequence_Quality_Roc) GetScore ¶
func (x *MolecularSequence_Quality_Roc) GetScore() []*datatypes_go_proto.Integer
func (*MolecularSequence_Quality_Roc) GetSensitivity ¶
func (x *MolecularSequence_Quality_Roc) GetSensitivity() []*datatypes_go_proto.Decimal
func (*MolecularSequence_Quality_Roc) ProtoMessage ¶
func (*MolecularSequence_Quality_Roc) ProtoMessage()
func (*MolecularSequence_Quality_Roc) ProtoReflect ¶
func (x *MolecularSequence_Quality_Roc) ProtoReflect() protoreflect.Message
func (*MolecularSequence_Quality_Roc) Reset ¶
func (x *MolecularSequence_Quality_Roc) Reset()
func (*MolecularSequence_Quality_Roc) String ¶
func (x *MolecularSequence_Quality_Roc) String() string
type MolecularSequence_Quality_TypeCode ¶
type MolecularSequence_Quality_TypeCode struct { Value codes_go_proto.QualityTypeCode_Value `protobuf:"varint,1,opt,name=value,proto3,enum=google.fhir.r5.core.QualityTypeCode_Value" json:"value,omitempty"` Id *datatypes_go_proto.String `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"` Extension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=extension,proto3" json:"extension,omitempty"` // contains filtered or unexported fields }
indel | snp | unknown
func (*MolecularSequence_Quality_TypeCode) Descriptor
deprecated
func (*MolecularSequence_Quality_TypeCode) Descriptor() ([]byte, []int)
Deprecated: Use MolecularSequence_Quality_TypeCode.ProtoReflect.Descriptor instead.
func (*MolecularSequence_Quality_TypeCode) GetExtension ¶
func (x *MolecularSequence_Quality_TypeCode) GetExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_Quality_TypeCode) GetId ¶
func (x *MolecularSequence_Quality_TypeCode) GetId() *datatypes_go_proto.String
func (*MolecularSequence_Quality_TypeCode) GetValue ¶
func (x *MolecularSequence_Quality_TypeCode) GetValue() codes_go_proto.QualityTypeCode_Value
func (*MolecularSequence_Quality_TypeCode) ProtoMessage ¶
func (*MolecularSequence_Quality_TypeCode) ProtoMessage()
func (*MolecularSequence_Quality_TypeCode) ProtoReflect ¶
func (x *MolecularSequence_Quality_TypeCode) ProtoReflect() protoreflect.Message
func (*MolecularSequence_Quality_TypeCode) Reset ¶
func (x *MolecularSequence_Quality_TypeCode) Reset()
func (*MolecularSequence_Quality_TypeCode) String ¶
func (x *MolecularSequence_Quality_TypeCode) String() string
type MolecularSequence_ReferenceSeq ¶
type MolecularSequence_ReferenceSeq struct { // Unique id for inter-element referencing Id *datatypes_go_proto.Id `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"` // Additional content defined by implementations Extension []*datatypes_go_proto.Extension `protobuf:"bytes,2,rep,name=extension,proto3" json:"extension,omitempty"` // Extensions that cannot be ignored even if unrecognized ModifierExtension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=modifier_extension,json=modifierExtension,proto3" json:"modifier_extension,omitempty"` // Chromosome containing genetic finding Chromosome *datatypes_go_proto.CodeableConcept `protobuf:"bytes,4,opt,name=chromosome,proto3" json:"chromosome,omitempty"` // The Genome Build used for reference, following GRCh build versions e.g. // 'GRCh 37' GenomeBuild *datatypes_go_proto.String `protobuf:"bytes,5,opt,name=genome_build,json=genomeBuild,proto3" json:"genome_build,omitempty"` Orientation *MolecularSequence_ReferenceSeq_OrientationCode `protobuf:"bytes,6,opt,name=orientation,proto3" json:"orientation,omitempty"` // Reference identifier ReferenceSeqId *datatypes_go_proto.CodeableConcept `protobuf:"bytes,7,opt,name=reference_seq_id,json=referenceSeqId,proto3" json:"reference_seq_id,omitempty"` // A pointer to another MolecularSequence entity as reference sequence ReferenceSeqPointer *datatypes_go_proto.Reference `protobuf:"bytes,8,opt,name=reference_seq_pointer,json=referenceSeqPointer,proto3" json:"reference_seq_pointer,omitempty"` // A string to represent reference sequence ReferenceSeqString *datatypes_go_proto.String `protobuf:"bytes,9,opt,name=reference_seq_string,json=referenceSeqString,proto3" json:"reference_seq_string,omitempty"` Strand *MolecularSequence_ReferenceSeq_StrandCode `protobuf:"bytes,10,opt,name=strand,proto3" json:"strand,omitempty"` // Start position of the window on the reference sequence WindowStart *datatypes_go_proto.Integer `protobuf:"bytes,11,opt,name=window_start,json=windowStart,proto3" json:"window_start,omitempty"` // End position of the window on the reference sequence WindowEnd *datatypes_go_proto.Integer `protobuf:"bytes,12,opt,name=window_end,json=windowEnd,proto3" json:"window_end,omitempty"` // contains filtered or unexported fields }
A sequence used as reference
func (*MolecularSequence_ReferenceSeq) Descriptor
deprecated
func (*MolecularSequence_ReferenceSeq) Descriptor() ([]byte, []int)
Deprecated: Use MolecularSequence_ReferenceSeq.ProtoReflect.Descriptor instead.
func (*MolecularSequence_ReferenceSeq) GetChromosome ¶
func (x *MolecularSequence_ReferenceSeq) GetChromosome() *datatypes_go_proto.CodeableConcept
func (*MolecularSequence_ReferenceSeq) GetExtension ¶
func (x *MolecularSequence_ReferenceSeq) GetExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_ReferenceSeq) GetGenomeBuild ¶
func (x *MolecularSequence_ReferenceSeq) GetGenomeBuild() *datatypes_go_proto.String
func (*MolecularSequence_ReferenceSeq) GetId ¶
func (x *MolecularSequence_ReferenceSeq) GetId() *datatypes_go_proto.Id
func (*MolecularSequence_ReferenceSeq) GetModifierExtension ¶
func (x *MolecularSequence_ReferenceSeq) GetModifierExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_ReferenceSeq) GetOrientation ¶
func (x *MolecularSequence_ReferenceSeq) GetOrientation() *MolecularSequence_ReferenceSeq_OrientationCode
func (*MolecularSequence_ReferenceSeq) GetReferenceSeqId ¶
func (x *MolecularSequence_ReferenceSeq) GetReferenceSeqId() *datatypes_go_proto.CodeableConcept
func (*MolecularSequence_ReferenceSeq) GetReferenceSeqPointer ¶
func (x *MolecularSequence_ReferenceSeq) GetReferenceSeqPointer() *datatypes_go_proto.Reference
func (*MolecularSequence_ReferenceSeq) GetReferenceSeqString ¶
func (x *MolecularSequence_ReferenceSeq) GetReferenceSeqString() *datatypes_go_proto.String
func (*MolecularSequence_ReferenceSeq) GetStrand ¶
func (x *MolecularSequence_ReferenceSeq) GetStrand() *MolecularSequence_ReferenceSeq_StrandCode
func (*MolecularSequence_ReferenceSeq) GetWindowEnd ¶
func (x *MolecularSequence_ReferenceSeq) GetWindowEnd() *datatypes_go_proto.Integer
func (*MolecularSequence_ReferenceSeq) GetWindowStart ¶
func (x *MolecularSequence_ReferenceSeq) GetWindowStart() *datatypes_go_proto.Integer
func (*MolecularSequence_ReferenceSeq) ProtoMessage ¶
func (*MolecularSequence_ReferenceSeq) ProtoMessage()
func (*MolecularSequence_ReferenceSeq) ProtoReflect ¶
func (x *MolecularSequence_ReferenceSeq) ProtoReflect() protoreflect.Message
func (*MolecularSequence_ReferenceSeq) Reset ¶
func (x *MolecularSequence_ReferenceSeq) Reset()
func (*MolecularSequence_ReferenceSeq) String ¶
func (x *MolecularSequence_ReferenceSeq) String() string
type MolecularSequence_ReferenceSeq_OrientationCode ¶
type MolecularSequence_ReferenceSeq_OrientationCode struct { Value codes_go_proto.OrientationTypeCode_Value `protobuf:"varint,1,opt,name=value,proto3,enum=google.fhir.r5.core.OrientationTypeCode_Value" json:"value,omitempty"` Id *datatypes_go_proto.String `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"` Extension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=extension,proto3" json:"extension,omitempty"` // contains filtered or unexported fields }
sense | antisense
func (*MolecularSequence_ReferenceSeq_OrientationCode) Descriptor
deprecated
func (*MolecularSequence_ReferenceSeq_OrientationCode) Descriptor() ([]byte, []int)
Deprecated: Use MolecularSequence_ReferenceSeq_OrientationCode.ProtoReflect.Descriptor instead.
func (*MolecularSequence_ReferenceSeq_OrientationCode) GetExtension ¶
func (x *MolecularSequence_ReferenceSeq_OrientationCode) GetExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_ReferenceSeq_OrientationCode) GetId ¶
func (x *MolecularSequence_ReferenceSeq_OrientationCode) GetId() *datatypes_go_proto.String
func (*MolecularSequence_ReferenceSeq_OrientationCode) GetValue ¶
func (x *MolecularSequence_ReferenceSeq_OrientationCode) GetValue() codes_go_proto.OrientationTypeCode_Value
func (*MolecularSequence_ReferenceSeq_OrientationCode) ProtoMessage ¶
func (*MolecularSequence_ReferenceSeq_OrientationCode) ProtoMessage()
func (*MolecularSequence_ReferenceSeq_OrientationCode) ProtoReflect ¶
func (x *MolecularSequence_ReferenceSeq_OrientationCode) ProtoReflect() protoreflect.Message
func (*MolecularSequence_ReferenceSeq_OrientationCode) Reset ¶
func (x *MolecularSequence_ReferenceSeq_OrientationCode) Reset()
func (*MolecularSequence_ReferenceSeq_OrientationCode) String ¶
func (x *MolecularSequence_ReferenceSeq_OrientationCode) String() string
type MolecularSequence_ReferenceSeq_StrandCode ¶
type MolecularSequence_ReferenceSeq_StrandCode struct { Value codes_go_proto.StrandTypeCode_Value `protobuf:"varint,1,opt,name=value,proto3,enum=google.fhir.r5.core.StrandTypeCode_Value" json:"value,omitempty"` Id *datatypes_go_proto.String `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"` Extension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=extension,proto3" json:"extension,omitempty"` // contains filtered or unexported fields }
watson | crick
func (*MolecularSequence_ReferenceSeq_StrandCode) Descriptor
deprecated
func (*MolecularSequence_ReferenceSeq_StrandCode) Descriptor() ([]byte, []int)
Deprecated: Use MolecularSequence_ReferenceSeq_StrandCode.ProtoReflect.Descriptor instead.
func (*MolecularSequence_ReferenceSeq_StrandCode) GetExtension ¶
func (x *MolecularSequence_ReferenceSeq_StrandCode) GetExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_ReferenceSeq_StrandCode) GetId ¶
func (x *MolecularSequence_ReferenceSeq_StrandCode) GetId() *datatypes_go_proto.String
func (*MolecularSequence_ReferenceSeq_StrandCode) GetValue ¶
func (x *MolecularSequence_ReferenceSeq_StrandCode) GetValue() codes_go_proto.StrandTypeCode_Value
func (*MolecularSequence_ReferenceSeq_StrandCode) ProtoMessage ¶
func (*MolecularSequence_ReferenceSeq_StrandCode) ProtoMessage()
func (*MolecularSequence_ReferenceSeq_StrandCode) ProtoReflect ¶
func (x *MolecularSequence_ReferenceSeq_StrandCode) ProtoReflect() protoreflect.Message
func (*MolecularSequence_ReferenceSeq_StrandCode) Reset ¶
func (x *MolecularSequence_ReferenceSeq_StrandCode) Reset()
func (*MolecularSequence_ReferenceSeq_StrandCode) String ¶
func (x *MolecularSequence_ReferenceSeq_StrandCode) String() string
type MolecularSequence_Repository ¶
type MolecularSequence_Repository struct { // Unique id for inter-element referencing Id *datatypes_go_proto.Id `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"` // Additional content defined by implementations Extension []*datatypes_go_proto.Extension `protobuf:"bytes,2,rep,name=extension,proto3" json:"extension,omitempty"` // Extensions that cannot be ignored even if unrecognized ModifierExtension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=modifier_extension,json=modifierExtension,proto3" json:"modifier_extension,omitempty"` Type *MolecularSequence_Repository_TypeCode `protobuf:"bytes,4,opt,name=type,proto3" json:"type,omitempty"` // URI of the repository Url *datatypes_go_proto.Uri `protobuf:"bytes,5,opt,name=url,proto3" json:"url,omitempty"` // Repository's name Name *datatypes_go_proto.String `protobuf:"bytes,6,opt,name=name,proto3" json:"name,omitempty"` // Id of the dataset that used to call for dataset in repository DatasetId *datatypes_go_proto.String `protobuf:"bytes,7,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"` // Id of the variantset that used to call for variantset in repository VariantsetId *datatypes_go_proto.String `protobuf:"bytes,8,opt,name=variantset_id,json=variantsetId,proto3" json:"variantset_id,omitempty"` // Id of the read ReadsetId *datatypes_go_proto.String `protobuf:"bytes,9,opt,name=readset_id,json=readsetId,proto3" json:"readset_id,omitempty"` // contains filtered or unexported fields }
External repository which contains detailed report related with observedSeq in this resource
func (*MolecularSequence_Repository) Descriptor
deprecated
func (*MolecularSequence_Repository) Descriptor() ([]byte, []int)
Deprecated: Use MolecularSequence_Repository.ProtoReflect.Descriptor instead.
func (*MolecularSequence_Repository) GetDatasetId ¶
func (x *MolecularSequence_Repository) GetDatasetId() *datatypes_go_proto.String
func (*MolecularSequence_Repository) GetExtension ¶
func (x *MolecularSequence_Repository) GetExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_Repository) GetId ¶
func (x *MolecularSequence_Repository) GetId() *datatypes_go_proto.Id
func (*MolecularSequence_Repository) GetModifierExtension ¶
func (x *MolecularSequence_Repository) GetModifierExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_Repository) GetName ¶
func (x *MolecularSequence_Repository) GetName() *datatypes_go_proto.String
func (*MolecularSequence_Repository) GetReadsetId ¶
func (x *MolecularSequence_Repository) GetReadsetId() *datatypes_go_proto.String
func (*MolecularSequence_Repository) GetType ¶
func (x *MolecularSequence_Repository) GetType() *MolecularSequence_Repository_TypeCode
func (*MolecularSequence_Repository) GetUrl ¶
func (x *MolecularSequence_Repository) GetUrl() *datatypes_go_proto.Uri
func (*MolecularSequence_Repository) GetVariantsetId ¶
func (x *MolecularSequence_Repository) GetVariantsetId() *datatypes_go_proto.String
func (*MolecularSequence_Repository) ProtoMessage ¶
func (*MolecularSequence_Repository) ProtoMessage()
func (*MolecularSequence_Repository) ProtoReflect ¶
func (x *MolecularSequence_Repository) ProtoReflect() protoreflect.Message
func (*MolecularSequence_Repository) Reset ¶
func (x *MolecularSequence_Repository) Reset()
func (*MolecularSequence_Repository) String ¶
func (x *MolecularSequence_Repository) String() string
type MolecularSequence_Repository_TypeCode ¶
type MolecularSequence_Repository_TypeCode struct { Value codes_go_proto.RepositoryTypeCode_Value `protobuf:"varint,1,opt,name=value,proto3,enum=google.fhir.r5.core.RepositoryTypeCode_Value" json:"value,omitempty"` Id *datatypes_go_proto.String `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"` Extension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=extension,proto3" json:"extension,omitempty"` // contains filtered or unexported fields }
directlink | openapi | login | oauth | other
func (*MolecularSequence_Repository_TypeCode) Descriptor
deprecated
func (*MolecularSequence_Repository_TypeCode) Descriptor() ([]byte, []int)
Deprecated: Use MolecularSequence_Repository_TypeCode.ProtoReflect.Descriptor instead.
func (*MolecularSequence_Repository_TypeCode) GetExtension ¶
func (x *MolecularSequence_Repository_TypeCode) GetExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_Repository_TypeCode) GetId ¶
func (x *MolecularSequence_Repository_TypeCode) GetId() *datatypes_go_proto.String
func (*MolecularSequence_Repository_TypeCode) GetValue ¶
func (x *MolecularSequence_Repository_TypeCode) GetValue() codes_go_proto.RepositoryTypeCode_Value
func (*MolecularSequence_Repository_TypeCode) ProtoMessage ¶
func (*MolecularSequence_Repository_TypeCode) ProtoMessage()
func (*MolecularSequence_Repository_TypeCode) ProtoReflect ¶
func (x *MolecularSequence_Repository_TypeCode) ProtoReflect() protoreflect.Message
func (*MolecularSequence_Repository_TypeCode) Reset ¶
func (x *MolecularSequence_Repository_TypeCode) Reset()
func (*MolecularSequence_Repository_TypeCode) String ¶
func (x *MolecularSequence_Repository_TypeCode) String() string
type MolecularSequence_StructureVariant ¶
type MolecularSequence_StructureVariant struct { // Unique id for inter-element referencing Id *datatypes_go_proto.Id `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"` // Additional content defined by implementations Extension []*datatypes_go_proto.Extension `protobuf:"bytes,2,rep,name=extension,proto3" json:"extension,omitempty"` // Extensions that cannot be ignored even if unrecognized ModifierExtension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=modifier_extension,json=modifierExtension,proto3" json:"modifier_extension,omitempty"` // Structural variant change type VariantType *datatypes_go_proto.CodeableConcept `protobuf:"bytes,4,opt,name=variant_type,json=variantType,proto3" json:"variant_type,omitempty"` // Does the structural variant have base pair resolution breakpoints? Exact *datatypes_go_proto.Boolean `protobuf:"bytes,5,opt,name=exact,proto3" json:"exact,omitempty"` // Structural variant length Length *datatypes_go_proto.Integer `protobuf:"bytes,6,opt,name=length,proto3" json:"length,omitempty"` Outer *MolecularSequence_StructureVariant_Outer `protobuf:"bytes,7,opt,name=outer,proto3" json:"outer,omitempty"` Inner *MolecularSequence_StructureVariant_Inner `protobuf:"bytes,8,opt,name=inner,proto3" json:"inner,omitempty"` // contains filtered or unexported fields }
Structural variant
func (*MolecularSequence_StructureVariant) Descriptor
deprecated
func (*MolecularSequence_StructureVariant) Descriptor() ([]byte, []int)
Deprecated: Use MolecularSequence_StructureVariant.ProtoReflect.Descriptor instead.
func (*MolecularSequence_StructureVariant) GetExact ¶
func (x *MolecularSequence_StructureVariant) GetExact() *datatypes_go_proto.Boolean
func (*MolecularSequence_StructureVariant) GetExtension ¶
func (x *MolecularSequence_StructureVariant) GetExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_StructureVariant) GetId ¶
func (x *MolecularSequence_StructureVariant) GetId() *datatypes_go_proto.Id
func (*MolecularSequence_StructureVariant) GetInner ¶
func (x *MolecularSequence_StructureVariant) GetInner() *MolecularSequence_StructureVariant_Inner
func (*MolecularSequence_StructureVariant) GetLength ¶
func (x *MolecularSequence_StructureVariant) GetLength() *datatypes_go_proto.Integer
func (*MolecularSequence_StructureVariant) GetModifierExtension ¶
func (x *MolecularSequence_StructureVariant) GetModifierExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_StructureVariant) GetOuter ¶
func (x *MolecularSequence_StructureVariant) GetOuter() *MolecularSequence_StructureVariant_Outer
func (*MolecularSequence_StructureVariant) GetVariantType ¶
func (x *MolecularSequence_StructureVariant) GetVariantType() *datatypes_go_proto.CodeableConcept
func (*MolecularSequence_StructureVariant) ProtoMessage ¶
func (*MolecularSequence_StructureVariant) ProtoMessage()
func (*MolecularSequence_StructureVariant) ProtoReflect ¶
func (x *MolecularSequence_StructureVariant) ProtoReflect() protoreflect.Message
func (*MolecularSequence_StructureVariant) Reset ¶
func (x *MolecularSequence_StructureVariant) Reset()
func (*MolecularSequence_StructureVariant) String ¶
func (x *MolecularSequence_StructureVariant) String() string
type MolecularSequence_StructureVariant_Inner ¶
type MolecularSequence_StructureVariant_Inner struct { // Unique id for inter-element referencing Id *datatypes_go_proto.Id `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"` // Additional content defined by implementations Extension []*datatypes_go_proto.Extension `protobuf:"bytes,2,rep,name=extension,proto3" json:"extension,omitempty"` // Extensions that cannot be ignored even if unrecognized ModifierExtension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=modifier_extension,json=modifierExtension,proto3" json:"modifier_extension,omitempty"` // Structural variant inner start Start *datatypes_go_proto.Integer `protobuf:"bytes,4,opt,name=start,proto3" json:"start,omitempty"` // Structural variant inner end End *datatypes_go_proto.Integer `protobuf:"bytes,5,opt,name=end,proto3" json:"end,omitempty"` // contains filtered or unexported fields }
Structural variant inner
func (*MolecularSequence_StructureVariant_Inner) Descriptor
deprecated
func (*MolecularSequence_StructureVariant_Inner) Descriptor() ([]byte, []int)
Deprecated: Use MolecularSequence_StructureVariant_Inner.ProtoReflect.Descriptor instead.
func (*MolecularSequence_StructureVariant_Inner) GetEnd ¶
func (x *MolecularSequence_StructureVariant_Inner) GetEnd() *datatypes_go_proto.Integer
func (*MolecularSequence_StructureVariant_Inner) GetExtension ¶
func (x *MolecularSequence_StructureVariant_Inner) GetExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_StructureVariant_Inner) GetId ¶
func (x *MolecularSequence_StructureVariant_Inner) GetId() *datatypes_go_proto.Id
func (*MolecularSequence_StructureVariant_Inner) GetModifierExtension ¶
func (x *MolecularSequence_StructureVariant_Inner) GetModifierExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_StructureVariant_Inner) GetStart ¶
func (x *MolecularSequence_StructureVariant_Inner) GetStart() *datatypes_go_proto.Integer
func (*MolecularSequence_StructureVariant_Inner) ProtoMessage ¶
func (*MolecularSequence_StructureVariant_Inner) ProtoMessage()
func (*MolecularSequence_StructureVariant_Inner) ProtoReflect ¶
func (x *MolecularSequence_StructureVariant_Inner) ProtoReflect() protoreflect.Message
func (*MolecularSequence_StructureVariant_Inner) Reset ¶
func (x *MolecularSequence_StructureVariant_Inner) Reset()
func (*MolecularSequence_StructureVariant_Inner) String ¶
func (x *MolecularSequence_StructureVariant_Inner) String() string
type MolecularSequence_StructureVariant_Outer ¶
type MolecularSequence_StructureVariant_Outer struct { // Unique id for inter-element referencing Id *datatypes_go_proto.Id `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"` // Additional content defined by implementations Extension []*datatypes_go_proto.Extension `protobuf:"bytes,2,rep,name=extension,proto3" json:"extension,omitempty"` // Extensions that cannot be ignored even if unrecognized ModifierExtension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=modifier_extension,json=modifierExtension,proto3" json:"modifier_extension,omitempty"` // Structural variant outer start Start *datatypes_go_proto.Integer `protobuf:"bytes,4,opt,name=start,proto3" json:"start,omitempty"` // Structural variant outer end End *datatypes_go_proto.Integer `protobuf:"bytes,5,opt,name=end,proto3" json:"end,omitempty"` // contains filtered or unexported fields }
Structural variant outer
func (*MolecularSequence_StructureVariant_Outer) Descriptor
deprecated
func (*MolecularSequence_StructureVariant_Outer) Descriptor() ([]byte, []int)
Deprecated: Use MolecularSequence_StructureVariant_Outer.ProtoReflect.Descriptor instead.
func (*MolecularSequence_StructureVariant_Outer) GetEnd ¶
func (x *MolecularSequence_StructureVariant_Outer) GetEnd() *datatypes_go_proto.Integer
func (*MolecularSequence_StructureVariant_Outer) GetExtension ¶
func (x *MolecularSequence_StructureVariant_Outer) GetExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_StructureVariant_Outer) GetId ¶
func (x *MolecularSequence_StructureVariant_Outer) GetId() *datatypes_go_proto.Id
func (*MolecularSequence_StructureVariant_Outer) GetModifierExtension ¶
func (x *MolecularSequence_StructureVariant_Outer) GetModifierExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_StructureVariant_Outer) GetStart ¶
func (x *MolecularSequence_StructureVariant_Outer) GetStart() *datatypes_go_proto.Integer
func (*MolecularSequence_StructureVariant_Outer) ProtoMessage ¶
func (*MolecularSequence_StructureVariant_Outer) ProtoMessage()
func (*MolecularSequence_StructureVariant_Outer) ProtoReflect ¶
func (x *MolecularSequence_StructureVariant_Outer) ProtoReflect() protoreflect.Message
func (*MolecularSequence_StructureVariant_Outer) Reset ¶
func (x *MolecularSequence_StructureVariant_Outer) Reset()
func (*MolecularSequence_StructureVariant_Outer) String ¶
func (x *MolecularSequence_StructureVariant_Outer) String() string
type MolecularSequence_TypeCode ¶
type MolecularSequence_TypeCode struct { Value codes_go_proto.SequenceTypeCode_Value `protobuf:"varint,1,opt,name=value,proto3,enum=google.fhir.r5.core.SequenceTypeCode_Value" json:"value,omitempty"` Id *datatypes_go_proto.String `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"` Extension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=extension,proto3" json:"extension,omitempty"` // contains filtered or unexported fields }
aa | dna | rna
func (*MolecularSequence_TypeCode) Descriptor
deprecated
func (*MolecularSequence_TypeCode) Descriptor() ([]byte, []int)
Deprecated: Use MolecularSequence_TypeCode.ProtoReflect.Descriptor instead.
func (*MolecularSequence_TypeCode) GetExtension ¶
func (x *MolecularSequence_TypeCode) GetExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_TypeCode) GetId ¶
func (x *MolecularSequence_TypeCode) GetId() *datatypes_go_proto.String
func (*MolecularSequence_TypeCode) GetValue ¶
func (x *MolecularSequence_TypeCode) GetValue() codes_go_proto.SequenceTypeCode_Value
func (*MolecularSequence_TypeCode) ProtoMessage ¶
func (*MolecularSequence_TypeCode) ProtoMessage()
func (*MolecularSequence_TypeCode) ProtoReflect ¶
func (x *MolecularSequence_TypeCode) ProtoReflect() protoreflect.Message
func (*MolecularSequence_TypeCode) Reset ¶
func (x *MolecularSequence_TypeCode) Reset()
func (*MolecularSequence_TypeCode) String ¶
func (x *MolecularSequence_TypeCode) String() string
type MolecularSequence_Variant ¶
type MolecularSequence_Variant struct { // Unique id for inter-element referencing Id *datatypes_go_proto.Id `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"` // Additional content defined by implementations Extension []*datatypes_go_proto.Extension `protobuf:"bytes,2,rep,name=extension,proto3" json:"extension,omitempty"` // Extensions that cannot be ignored even if unrecognized ModifierExtension []*datatypes_go_proto.Extension `protobuf:"bytes,3,rep,name=modifier_extension,json=modifierExtension,proto3" json:"modifier_extension,omitempty"` // Start position of the variant on the reference sequence Start *datatypes_go_proto.Integer `protobuf:"bytes,4,opt,name=start,proto3" json:"start,omitempty"` // End position of the variant on the reference sequence End *datatypes_go_proto.Integer `protobuf:"bytes,5,opt,name=end,proto3" json:"end,omitempty"` // Allele that was observed ObservedAllele *datatypes_go_proto.String `protobuf:"bytes,6,opt,name=observed_allele,json=observedAllele,proto3" json:"observed_allele,omitempty"` // Allele in the reference sequence ReferenceAllele *datatypes_go_proto.String `protobuf:"bytes,7,opt,name=reference_allele,json=referenceAllele,proto3" json:"reference_allele,omitempty"` // Extended CIGAR string for aligning the sequence with reference bases Cigar *datatypes_go_proto.String `protobuf:"bytes,8,opt,name=cigar,proto3" json:"cigar,omitempty"` // Pointer to observed variant information VariantPointer *datatypes_go_proto.Reference `protobuf:"bytes,9,opt,name=variant_pointer,json=variantPointer,proto3" json:"variant_pointer,omitempty"` // contains filtered or unexported fields }
Variant in sequence
func (*MolecularSequence_Variant) Descriptor
deprecated
func (*MolecularSequence_Variant) Descriptor() ([]byte, []int)
Deprecated: Use MolecularSequence_Variant.ProtoReflect.Descriptor instead.
func (*MolecularSequence_Variant) GetCigar ¶
func (x *MolecularSequence_Variant) GetCigar() *datatypes_go_proto.String
func (*MolecularSequence_Variant) GetEnd ¶
func (x *MolecularSequence_Variant) GetEnd() *datatypes_go_proto.Integer
func (*MolecularSequence_Variant) GetExtension ¶
func (x *MolecularSequence_Variant) GetExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_Variant) GetId ¶
func (x *MolecularSequence_Variant) GetId() *datatypes_go_proto.Id
func (*MolecularSequence_Variant) GetModifierExtension ¶
func (x *MolecularSequence_Variant) GetModifierExtension() []*datatypes_go_proto.Extension
func (*MolecularSequence_Variant) GetObservedAllele ¶
func (x *MolecularSequence_Variant) GetObservedAllele() *datatypes_go_proto.String
func (*MolecularSequence_Variant) GetReferenceAllele ¶
func (x *MolecularSequence_Variant) GetReferenceAllele() *datatypes_go_proto.String
func (*MolecularSequence_Variant) GetStart ¶
func (x *MolecularSequence_Variant) GetStart() *datatypes_go_proto.Integer
func (*MolecularSequence_Variant) GetVariantPointer ¶
func (x *MolecularSequence_Variant) GetVariantPointer() *datatypes_go_proto.Reference
func (*MolecularSequence_Variant) ProtoMessage ¶
func (*MolecularSequence_Variant) ProtoMessage()
func (*MolecularSequence_Variant) ProtoReflect ¶
func (x *MolecularSequence_Variant) ProtoReflect() protoreflect.Message
func (*MolecularSequence_Variant) Reset ¶
func (x *MolecularSequence_Variant) Reset()
func (*MolecularSequence_Variant) String ¶
func (x *MolecularSequence_Variant) String() string