blosum

package

v0.0.0-...-8b014e7 Latest Latest Go to latest Published: Jun 23, 2015 License: GPL-2.0 Imports: 0 Imported by: 0

Details

Valid go.mod file

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Repository

github.com/ndaniels/cablastp2

Links

Open Source Insights

Documentation ¶

Constants ¶

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const Alphabet62 = "ABCDEFGHIKLMNPQRSTVWXYZ"

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const AlphabetDNA = "ACGTN"

Variables ¶

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var Matrix62 = [][]int{
	{4.0, -2.0, 0.0, -2.0, -1.0, -2.0, 0.0, -2.0, -1.0, -1.0, -1.0, -1.0, -2.0, -1.0, -1.0, -1.0, 1.0, 0.0, 0.0, -3.0, 0.0, -2.0, -1.0, -4.0},
	{-2.0, 4.0, -3.0, 4.0, 1.0, -3.0, -1.0, 0.0, -3.0, 0.0, -4.0, -3.0, 3.0, -2.0, 0.0, -1.0, 0.0, -1.0, -3.0, -4.0, -1.0, -3.0, 1.0, -4.0},
	{0.0, -3.0, 9.0, -3.0, -4.0, -2.0, -3.0, -3.0, -1.0, -3.0, -1.0, -1.0, -3.0, -3.0, -3.0, -3.0, -1.0, -1.0, -1.0, -2.0, -2.0, -2.0, -3.0, -4.0},
	{-2.0, 4.0, -3.0, 6.0, 2.0, -3.0, -1.0, -1.0, -3.0, -1.0, -4.0, -3.0, 1.0, -1.0, 0.0, -2.0, 0.0, -1.0, -3.0, -4.0, -1.0, -3.0, 1.0, -4.0},
	{-1.0, 1.0, -4.0, 2.0, 5.0, -3.0, -2.0, 0.0, -3.0, 1.0, -3.0, -2.0, 0.0, -1.0, 2.0, 0.0, 0.0, -1.0, -2.0, -3.0, -1.0, -2.0, 4.0, -4.0},
	{-2.0, -3.0, -2.0, -3.0, -3.0, 6.0, -3.0, -1.0, 0.0, -3.0, 0.0, 0.0, -3.0, -4.0, -3.0, -3.0, -2.0, -2.0, -1.0, 1.0, -1.0, 3.0, -3.0, -4.0},
	{0.0, -1.0, -3.0, -1.0, -2.0, -3.0, 6.0, -2.0, -4.0, -2.0, -4.0, -3.0, 0.0, -2.0, -2.0, -2.0, 0.0, -2.0, -3.0, -2.0, -1.0, -3.0, -2.0, -4.0},
	{-2.0, 0.0, -3.0, -1.0, 0.0, -1.0, -2.0, 8.0, -3.0, -1.0, -3.0, -2.0, 1.0, -2.0, 0.0, 0.0, -1.0, -2.0, -3.0, -2.0, -1.0, 2.0, 0.0, -4.0},
	{-1.0, -3.0, -1.0, -3.0, -3.0, 0.0, -4.0, -3.0, 4.0, -3.0, 2.0, 1.0, -3.0, -3.0, -3.0, -3.0, -2.0, -1.0, 3.0, -3.0, -1.0, -1.0, -3.0, -4.0},
	{-1.0, 0.0, -3.0, -1.0, 1.0, -3.0, -2.0, -1.0, -3.0, 5.0, -2.0, -1.0, 0.0, -1.0, 1.0, 2.0, 0.0, -1.0, -2.0, -3.0, -1.0, -2.0, 1.0, -4.0},
	{-1.0, -4.0, -1.0, -4.0, -3.0, 0.0, -4.0, -3.0, 2.0, -2.0, 4.0, 2.0, -3.0, -3.0, -2.0, -2.0, -2.0, -1.0, 1.0, -2.0, -1.0, -1.0, -3.0, -4.0},
	{-1.0, -3.0, -1.0, -3.0, -2.0, 0.0, -3.0, -2.0, 1.0, -1.0, 2.0, 5.0, -2.0, -2.0, 0.0, -1.0, -1.0, -1.0, 1.0, -1.0, -1.0, -1.0, -1.0, -4.0},
	{-2.0, 3.0, -3.0, 1.0, 0.0, -3.0, 0.0, 1.0, -3.0, 0.0, -3.0, -2.0, 6.0, -2.0, 0.0, 0.0, 1.0, 0.0, -3.0, -4.0, -1.0, -2.0, 0.0, -4.0},
	{-1.0, -2.0, -3.0, -1.0, -1.0, -4.0, -2.0, -2.0, -3.0, -1.0, -3.0, -2.0, -2.0, 7.0, -1.0, -2.0, -1.0, -1.0, -2.0, -4.0, -2.0, -3.0, -1.0, -4.0},
	{-1.0, 0.0, -3.0, 0.0, 2.0, -3.0, -2.0, 0.0, -3.0, 1.0, -2.0, 0.0, 0.0, -1.0, 5.0, 1.0, 0.0, -1.0, -2.0, -2.0, -1.0, -1.0, 3.0, -4.0},
	{-1.0, -1.0, -3.0, -2.0, 0.0, -3.0, -2.0, 0.0, -3.0, 2.0, -2.0, -1.0, 0.0, -2.0, 1.0, 5.0, -1.0, -1.0, -3.0, -3.0, -1.0, -2.0, 0.0, -4.0},
	{1.0, 0.0, -1.0, 0.0, 0.0, -2.0, 0.0, -1.0, -2.0, 0.0, -2.0, -1.0, 1.0, -1.0, 0.0, -1.0, 4.0, 1.0, -2.0, -3.0, 0.0, -2.0, 0.0, -4.0},
	{0.0, -1.0, -1.0, -1.0, -1.0, -2.0, -2.0, -2.0, -1.0, -1.0, -1.0, -1.0, 0.0, -1.0, -1.0, -1.0, 1.0, 5.0, 0.0, -2.0, 0.0, -2.0, -1.0, -4.0},
	{0.0, -3.0, -1.0, -3.0, -2.0, -1.0, -3.0, -3.0, 3.0, -2.0, 1.0, 1.0, -3.0, -2.0, -2.0, -3.0, -2.0, 0.0, 4.0, -3.0, -1.0, -1.0, -2.0, -4.0},
	{-3.0, -4.0, -2.0, -4.0, -3.0, 1.0, -2.0, -2.0, -3.0, -3.0, -2.0, -1.0, -4.0, -4.0, -2.0, -3.0, -3.0, -2.0, -3.0, 11.0, -2.0, 2.0, -3.0, -4.0},
	{0.0, -1.0, -2.0, -1.0, -1.0, -1.0, -1.0, -1.0, -1.0, -1.0, -1.0, -1.0, -1.0, -2.0, -1.0, -1.0, 0.0, 0.0, -1.0, -2.0, -1.0, -1.0, -1.0, -4.0},
	{-2.0, -3.0, -2.0, -3.0, -2.0, 3.0, -3.0, 2.0, -1.0, -2.0, -1.0, -1.0, -2.0, -3.0, -1.0, -2.0, -2.0, -2.0, -1.0, 2.0, -1.0, 7.0, -2.0, -4.0},
	{-1.0, 1.0, -3.0, 1.0, 4.0, -3.0, -2.0, 0.0, -3.0, 1.0, -3.0, -1.0, 0.0, -1.0, 3.0, 0.0, 0.0, -1.0, -2.0, -3.0, -1.0, -2.0, 4.0, -4.0},
	{-4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, -4.0, 0.0},
}

View Source

var MatrixDNA = [][]int{
	{2, -3, -3, -3, 0, -5},
	{-3, 2, -3, -3, 0, -5},
	{-3, -3, 2, -3, 0, -5},
	{-3, -3, -3, 2, 0, -5},
	{0, 0, 0, 0, 1, -5},
	{-5, -5, -5, -5, -5, 0},
}

Functions ¶

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Types ¶

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Source Files ¶

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