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¶
Overview ¶
Endpoints defined by API, along with their paths and permission required. A lot of exported members are structs only used in here, but need to be public so Go JSON parsing can see their fields
Example (CalculateTotals_AB_NeedsCombined) ¶
q, err := quantModel.ReadQuantificationFile("./test-data/AB.bin")
fmt.Printf("%v\n", err)
result, err := calculateTotals(q, []int{90, 91, 95})
fmt.Printf("%v|%v\n", result, err)
Output: <nil> map[]|Quantification must be for Combined detectors
Example (CalculateTotals_NoPMC) ¶
q, err := quantModel.ReadQuantificationFile("./test-data/combined.bin")
fmt.Printf("%v\n", err)
result, err := calculateTotals(q, []int{68590, 68591, 68595})
fmt.Printf("%v|%v\n", result, err)
Output: <nil> map[]|Quantification had no valid data for ROI PMCs
Example (CalculateTotals_Success) ¶
q, err := quantModel.ReadQuantificationFile("./test-data/combined.bin")
fmt.Printf("%v\n", err)
result, err := calculateTotals(q, []int{90, 91, 95})
fmt.Printf("%v|%v\n", result, err)
Output: <nil> map[CaO_%:7.5057006 FeO-T_%:10.621034 SiO2_%:41.48377 TiO2_%:0.7424]|<nil>
Example (DatasetCreatePost_BadFormat) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/dataset/abc-123", bytes.NewReader([]byte("data goes here")))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("POST", "/dataset/abc-123?format=some-format", bytes.NewReader([]byte("data goes here")))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 500 Unexpected format: "" 500 Unexpected format: "some-format"
Example (DatasetCreatePost_BadZip) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{Bucket: aws.String(artifactManualUploadBucket), Prefix: aws.String("UploadedDatasets/the-test_dataset")},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{},
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
apiRouter := MakeRouter(svcs)
body, err := ioutil.ReadFile("./test-data/just-image.zip")
fmt.Println(err)
req, _ := http.NewRequest("POST", "/dataset/the-test dataset?format=jpl-breadboard", bytes.NewReader(body))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: <nil> 500 Zip file must only contain MSA files. Found: Non-abraded sample.png
Example (DatasetCreatePost_CantCheckExists) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{Bucket: aws.String(artifactManualUploadBucket), Prefix: aws.String("UploadedDatasets/the-test_dataset")},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
nil,
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
apiRouter := MakeRouter(svcs)
body, err := ioutil.ReadFile("./test-data/just-image.zip")
fmt.Println(err)
req, _ := http.NewRequest("POST", "/dataset/the-test dataset?format=jpl-breadboard", bytes.NewReader(body))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: <nil> 500 Failed to list existing files for dataset ID: the-test_dataset. Error: Returning error from ListObjectsV2
Example (DatasetCreatePost_Exists) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{Bucket: aws.String(artifactManualUploadBucket), Prefix: aws.String("UploadedDatasets/the-test_dataset")},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{
{Key: aws.String("UploadedDatasets/the-test_dataset/file.txt")},
},
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
apiRouter := MakeRouter(svcs)
body, err := ioutil.ReadFile("./test-data/just-image.zip")
fmt.Println(err)
req, _ := http.NewRequest("POST", "/dataset/the-test dataset?format=jpl-breadboard", bytes.NewReader(body))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: <nil> 500 Dataset ID already exists: the-test_dataset
Example (DatasetCreatePost_Success) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{Bucket: aws.String(artifactManualUploadBucket), Prefix: aws.String("UploadedDatasets/the-test_dataset")},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{},
},
}
expectedSpectraBytes, err := ioutil.ReadFile("./test-data/expected-spectra.zip")
fmt.Printf("expected spectra read error: %v\n", err)
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("UploadedDatasets/the-test_dataset/spectra.zip"), Body: bytes.NewReader(expectedSpectraBytes),
},
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("UploadedDatasets/the-test_dataset/import.json"), Body: bytes.NewReader([]byte(`{
"datasetid": "the-test_dataset",
"title": "the-test_dataset",
"targetid": "0",
"target": "",
"siteid": 0,
"site": "",
"group": "JPL Breadboard",
"beamfile": "",
"beamparams": "10,0,10,0",
"housekeeping": "",
"contextimgdir": "",
"msadir": "spectra",
"pseudointensitycsv": "",
"ignoremsa": "",
"singledetectormsa": false,
"genpmcs": true,
"readtype": "Normal",
"detaduplicate": false,
"genbulkmax": true,
"detectorconfig": "Breadboard",
"bulkquantfile": "",
"ev_xperchan_a": 0,
"ev_offset_a": 0,
"ev_xperchan_b": 0,
"ev_offset_b": 0,
"exclude_normal_dwell": false,
"sol": ""
}`)),
},
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("UploadedDatasets/the-test_dataset/detector.json"), Body: bytes.NewReader([]byte(`{
"detector": "jpl-breadboard"
}`)),
},
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("UploadedDatasets/the-test_dataset/creator.json"), Body: bytes.NewReader([]byte(`{
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
{},
{},
{},
}
idGen := services.MockIDGenerator{
IDs: []string{"uuu333"},
}
svcs := MakeMockSvcs(&mockS3, &idGen, nil, nil)
mockSNS := awsutil.MockSNS{
ExpInput: []sns.PublishInput{
{
Message: aws.String("{\"datasetID\":\"the-test_dataset\",\"logID\":\"dataimport-uuu333\"}"),
TopicArn: aws.String("arn:1:2:3:4:5"),
},
},
QueuedOutput: []sns.PublishOutput{
{},
},
}
svcs.SNS = &mockSNS
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
apiRouter := MakeRouter(svcs)
body, err := os.ReadFile("./test-data/just-msas.zip")
fmt.Printf("expected upload file read error: %v\n", err)
req, _ := http.NewRequest("POST", "/dataset/the-test dataset?format=jpl-breadboard", bytes.NewReader(body))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: expected spectra read error: <nil> expected upload file read error: <nil> 200 "the-test_dataset-dataimport-uuu333"
Example (DatasetCustomImagesDelete) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpDeleteObjectInput = []s3.DeleteObjectInput{
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-123/UNALIGNED/unaligned-222.jpg"),
},
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-123/UNALIGNED/unaligned-222.jpg"),
},
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-123/RGBU/nirgbuv-333.tif"),
},
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-123/RGBU/nirgbuv-333.tif"),
},
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-123/MATCHED/watson-222.json"),
},
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-123/MATCHED/watson-222.json"),
},
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-123/MATCHED/watson-222.jpg"),
},
}
mockS3.QueuedDeleteObjectOutput = []*s3.DeleteObjectOutput{
nil, // unaligned missing
{},
nil, // rgbu missing
{},
nil, // matched JSON missing
{}, // matched json
{}, // matched image
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
apiRouter := MakeRouter(svcs)
// Missing type
req, _ := http.NewRequest("DELETE", "/dataset/images/abc-123/watson-111.jpg", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Bad type
req, _ = http.NewRequest("DELETE", "/dataset/images/abc-123/badtype/watson-222.jpg", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Unaligned, fail
req, _ = http.NewRequest("DELETE", "/dataset/images/abc-123/unaligned/unaligned-222.jpg", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Unaligned, OK
req, _ = http.NewRequest("DELETE", "/dataset/images/abc-123/unaligned/unaligned-222.jpg", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// RGBU, fail
req, _ = http.NewRequest("DELETE", "/dataset/images/abc-123/rgbu/nirgbuv-333.tif", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// RGBU, OK
req, _ = http.NewRequest("DELETE", "/dataset/images/abc-123/rgbu/nirgbuv-333.tif", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Matched, fail
req, _ = http.NewRequest("DELETE", "/dataset/images/abc-123/matched/watson-222.jpg", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Matched, OK
req, _ = http.NewRequest("DELETE", "/dataset/images/abc-123/matched/watson-222.jpg", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 405 400 Invalid custom image type: "badtype" 404 unaligned-222.jpg not found 200 404 nirgbuv-333.tif not found 200 404 watson-222.json not found 200
Example (DatasetCustomImagesGet_matched) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-111/MATCHED/watson-123.json"),
},
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-123/MATCHED/watson-33.json"),
},
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/abc-123/dataset.bin"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"aligned-beam-pmc": 77,
"matched-image": "watson-33.png",
"x-offset": 11,
"y-offset": 12,
"x-scale": 1.4,
"y-scale": 1.5
}`))),
},
nil,
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/dataset/images/abc-111/matched/watson-123.jpg", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("GET", "/dataset/images/abc-123/matched/watson-33.png", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 dataset custom image meta not found 200 { "alignedImageLink": "", "download-link": "https:///dataset/download/abc-123/watson-33.png?loadCustomType=matched", "aligned-beam-pmc": 77, "matched-image": "watson-33.png", "x-offset": 11, "y-offset": 12, "x-scale": 1.4, "y-scale": 1.5 }
Example (DatasetCustomImagesGet_rgbu) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/dataset/images/abc-111/rgbu/rgbu.tif", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 { "download-link": "https:///dataset/download/abc-111/rgbu.tif?loadCustomType=rgbu" }
Example (DatasetCustomImagesGet_unaligned) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/dataset/images/abc-111/unaligned/mastcamZ.png", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 { "download-link": "https:///dataset/download/abc-111/mastcamZ.png?loadCustomType=unaligned" }
Example (DatasetCustomImagesList_matched) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{Bucket: aws.String(artifactManualUploadBucket), Prefix: aws.String("dataset-addons/abc-111/MATCHED/")},
{Bucket: aws.String(artifactManualUploadBucket), Prefix: aws.String("dataset-addons/abc-123/MATCHED/")},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
nil,
{
Contents: []*s3.Object{
{Key: aws.String("dataset-addons/abc-123/RGBU/watson-123.jpg")},
{Key: aws.String("dataset-addons/abc-123/RGBU/watson-123.json")},
{Key: aws.String("dataset-addons/abc-123/RGBU/shouldnt be here.txt")},
{Key: aws.String("dataset-addons/abc-123/RGBU/watson-777.png")},
{Key: aws.String("dataset-addons/abc-123/RGBU/watson-777-meta.json")},
{Key: aws.String("dataset-addons/abc-123/RGBU/watson-33.png")},
{Key: aws.String("dataset-addons/abc-123/RGBU/watson-33.json")},
{Key: aws.String("dataset-addons/abc-123/RGBU/mosaic.png")},
},
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
mockUser := pixlUser.UserInfo{
Name: "Niko Bellic",
UserID: "600f2a0806b6c70071d3d174",
Permissions: map[string]bool{
"read:data-analysis": true,
"access:super-admin": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/dataset/images/abc-111/matched", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("GET", "/dataset/images/abc-123/matched", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 custom images not found 200 [ "watson-123.jpg", "watson-33.png" ]
Example (DatasetCustomImagesList_missingtype) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/dataset/images/abc-111", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 404 page not found
Example (DatasetCustomImagesList_rgbu) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{Bucket: aws.String(artifactManualUploadBucket), Prefix: aws.String("dataset-addons/abc-111/RGBU/")},
{Bucket: aws.String(artifactManualUploadBucket), Prefix: aws.String("dataset-addons/abc-123/RGBU/")},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
nil,
{
Contents: []*s3.Object{
{Key: aws.String("dataset-addons/abc-123/RGBU/nirgbuv.tif")},
{Key: aws.String("dataset-addons/abc-123/RGBU/shouldnt be here.txt")},
{Key: aws.String("dataset-addons/abc-123/RGBU/another.tif")},
},
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
mockUser := pixlUser.UserInfo{
Name: "Niko Bellic",
UserID: "600f2a0806b6c70071d3d174",
Permissions: map[string]bool{
"read:data-analysis": true,
"access:super-admin": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/dataset/images/abc-111/rgbu", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("GET", "/dataset/images/abc-123/rgbu", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 custom images not found 200 [ "nirgbuv.tif", "shouldnt be here.txt", "another.tif" ]
Example (DatasetCustomImagesList_unaligned) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{Bucket: aws.String(artifactManualUploadBucket), Prefix: aws.String("dataset-addons/abc-111/UNALIGNED/")},
{Bucket: aws.String(artifactManualUploadBucket), Prefix: aws.String("dataset-addons/abc-123/UNALIGNED/")},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
nil,
{
Contents: []*s3.Object{
{Key: aws.String("dataset-addons/abc-123/UNALIGNED/mastcam-123.jpg")},
{Key: aws.String("dataset-addons/abc-123/UNALIGNED/shouldnt be here.txt")},
{Key: aws.String("dataset-addons/abc-123/UNALIGNED/mosaic.png")},
},
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
mockUser := pixlUser.UserInfo{
Name: "Niko Bellic",
UserID: "600f2a0806b6c70071d3d174",
Permissions: map[string]bool{
"read:data-analysis": true,
"access:super-admin": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/dataset/images/abc-111/unaligned", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("GET", "/dataset/images/abc-123/unaligned", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 custom images not found 200 [ "mastcam-123.jpg", "shouldnt be here.txt", "mosaic.png" ]
Example (DatasetCustomImagesPost_badfilename) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/dataset/images/abc-111/rgbu/noextension-file-name", bytes.NewBuffer([]byte{84, 73, 70}))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 400 Invalid file name: "noextension-file-name"
Example (DatasetCustomImagesPost_badtype) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
apiRouter := MakeRouter(svcs)
// Bad type
req, _ := http.NewRequest("POST", "/dataset/images/abc-111/badtype/nirgbuv.png", bytes.NewBuffer([]byte{84, 73, 70}))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 400 Invalid custom image type: "badtype"
Example (DatasetCustomImagesPost_matched) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// Expecting uploaded image and JSON file
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-111/MATCHED/watson-444.json"), Body: bytes.NewReader([]byte(`{
"aligned-beam-pmc": 88,
"matched-image": "watson-444.png",
"x-offset": 11,
"y-offset": 22,
"x-scale": 1.23,
"y-scale": 1.1
}`)),
},
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-111/MATCHED/watson-444.png"), Body: bytes.NewReader([]byte("PNG")),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
apiRouter := MakeRouter(svcs)
// Missing aligned-beam-pmc
req, _ := http.NewRequest("POST", "/dataset/images/abc-111/matched/watson-444.png?x-scale=1.23&y-scale=1.1&x-offset=11&y-offset=22", bytes.NewBuffer([]byte{80, 78, 71}))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Missing x-scale
req, _ = http.NewRequest("POST", "/dataset/images/abc-111/matched/watson-444.png?y-scale=1.1&x-offset=11&y-offset=22&aligned-beam-pmc=88", bytes.NewBuffer([]byte{80, 78, 71}))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// x-scale is not float
req, _ = http.NewRequest("POST", "/dataset/images/abc-111/matched/watson-444.png?x-scale=Large&y-scale=1.1&x-offset=11&y-offset=22&aligned-beam-pmc=88", bytes.NewBuffer([]byte{80, 78, 71}))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Aligned-beam-pmc is empty
req, _ = http.NewRequest("POST", "/dataset/images/abc-111/matched/watson-444.png?x-scale=1.23&y-scale=1.1&x-offset=11&y-offset=22&aligned-beam-pmc=", bytes.NewBuffer([]byte{80, 78, 71}))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Bad image type
req, _ = http.NewRequest("POST", "/dataset/images/abc-111/matched/watson-444.gif?x-scale=1.23&y-scale=1.1&x-offset=11&y-offset=22&aligned-beam-pmc=88", bytes.NewBuffer([]byte{80, 78, 71}))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Empty image body
req, _ = http.NewRequest("POST", "/dataset/images/abc-111/matched/watson-444.png?x-scale=1.23&y-scale=1.1&x-offset=11&y-offset=22&aligned-beam-pmc=88", bytes.NewBuffer([]byte{}))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Works
req, _ = http.NewRequest("POST", "/dataset/images/abc-111/matched/watson-444.png?x-scale=1.23&y-scale=1.1&x-offset=11&y-offset=22&aligned-beam-pmc=88", bytes.NewBuffer([]byte{80, 78, 71})) // Spells PNG in ascii
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 400 Missing query parameter "aligned-beam-pmc" for matched image: "watson-444.png" 400 Missing query parameter "x-scale" for matched image: "watson-444.png" 400 Query parameter "x-scale" was not a float, for matched image: "watson-444.png" 400 Query parameter "aligned-beam-pmc" was not an int, for matched image: "watson-444.png" 400 Invalid image file type: "watson-444.gif" 400 No image data sent 200
Example (DatasetCustomImagesPost_rgbu) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// Expecting uploaded image and JSON file
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-111/RGBU/nirgbuv.tif"), Body: bytes.NewReader([]byte("TIF")),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
apiRouter := MakeRouter(svcs)
// Bad image type
req, _ := http.NewRequest("POST", "/dataset/images/abc-111/rgbu/nirgbuv.png", bytes.NewBuffer([]byte{84, 73, 70}))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// No body
req, _ = http.NewRequest("POST", "/dataset/images/abc-111/rgbu/nirgbuv.tif", bytes.NewBuffer([]byte{}))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("POST", "/dataset/images/abc-111/rgbu/nirgbuv.tif", bytes.NewBuffer([]byte{84, 73, 70}))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 400 Invalid image file type: "nirgbuv.png" 400 No image data sent 200
Example (DatasetCustomImagesPost_unaligned) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// Expecting uploaded image and JSON file
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-111/UNALIGNED/mastcam.png"), Body: bytes.NewReader([]byte("PNG")),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
apiRouter := MakeRouter(svcs)
// Bad image type
req, _ := http.NewRequest("POST", "/dataset/images/abc-111/unaligned/mastcam.tif", bytes.NewBuffer([]byte{80, 78, 71}))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// No body
req, _ = http.NewRequest("POST", "/dataset/images/abc-111/unaligned/mastcam.png", bytes.NewBuffer([]byte{}))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("POST", "/dataset/images/abc-111/unaligned/mastcam.png", bytes.NewBuffer([]byte{80, 78, 71}))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 400 Invalid image file type: "mastcam.tif" 400 No image data sent 200
Example (DatasetCustomImagesPut) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-111/MATCHED/doesnt-exist.json"),
},
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-111/MATCHED/watson-444.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"aligned-beam-pmc": 77,
"matched-image": "watson-444.png",
"x-offset": 11,
"y-offset": 12,
"x-scale": 1.4,
"y-scale": 1.5
}`))),
},
}
// Expecting uploaded JSON file ONCE
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-111/MATCHED/watson-444.json"), Body: bytes.NewReader([]byte(`{
"aligned-beam-pmc": 88,
"matched-image": "watson-444.png",
"x-offset": 12,
"y-offset": 23,
"x-scale": 1.23,
"y-scale": 1.1
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
apiRouter := MakeRouter(svcs)
// Missing aligned-beam-pmc
req, _ := http.NewRequest("PUT", "/dataset/images/abc-111/matched/watson-444.png?x-scale=1.23&y-scale=1.1&x-offset=11&y-offset=22", bytes.NewBuffer([]byte{}))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Missing x-scale
req, _ = http.NewRequest("PUT", "/dataset/images/abc-111/matched/watson-444.png?y-scale=1.1&x-offset=11&y-offset=22&aligned-beam-pmc=88", bytes.NewBuffer([]byte{}))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// x-scale is not float
req, _ = http.NewRequest("PUT", "/dataset/images/abc-111/matched/watson-444.png?x-scale=Large&y-scale=1.1&x-offset=11&y-offset=22&aligned-beam-pmc=88", bytes.NewBuffer([]byte{}))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Aligned-beam-pmc is empty
req, _ = http.NewRequest("PUT", "/dataset/images/abc-111/matched/watson-444.png?x-scale=1.23&y-scale=1.1&x-offset=11&y-offset=22&aligned-beam-pmc=", bytes.NewBuffer([]byte{}))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Bad image type
req, _ = http.NewRequest("PUT", "/dataset/images/abc-111/unaligned/watson-444.png?x-scale=1.23&y-scale=1.1&x-offset=11&y-offset=22&aligned-beam-pmc=88", bytes.NewBuffer([]byte{}))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Bad image name
req, _ = http.NewRequest("PUT", "/dataset/images/abc-111/matched/doesnt-exist.png?x-scale=1.23&y-scale=1.1&x-offset=11&y-offset=22&aligned-beam-pmc=88", bytes.NewBuffer([]byte{}))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Works
req, _ = http.NewRequest("PUT", "/dataset/images/abc-111/matched/watson-444.png?x-scale=1.23&y-scale=1.1&x-offset=12&y-offset=23&aligned-beam-pmc=88", bytes.NewBuffer([]byte{}))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 400 Missing query parameter "aligned-beam-pmc" for matched image: "watson-444.png" 400 Missing query parameter "x-scale" for matched image: "watson-444.png" 400 Query parameter "x-scale" was not a float, for matched image: "watson-444.png" 400 Query parameter "aligned-beam-pmc" was not an int, for matched image: "watson-444.png" 400 Invalid custom image type: "unaligned" 404 doesnt-exist.json not found 200
Example (DatasetCustomMetaGet) ¶
const customMetaJSON = `{
"title": "Alien Fossil", "defaultContextImage": "File1.jpg"
}`
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-123/custom-meta.json"),
},
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-456/custom-meta.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(customMetaJSON))),
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/dataset/meta/abc-123", nil) // Should return empty list, datasets.json fails to download
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("GET", "/dataset/meta/abc-456", nil) // Should return all items. NOTE: tests link creation (though no host name specified so won't have a valid link)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 dataset custom meta not found 200 { "title": "Alien Fossil", "defaultContextImage": "File1.jpg" }
Example (DatasetCustomMetaPut) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(artifactManualUploadBucket), Key: aws.String("dataset-addons/abc-123/custom-meta.json"), Body: bytes.NewReader([]byte(`{
"title": "Crater Rim",
"defaultContextImage": "File1.jpg"
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.ManualUploadBucket = artifactManualUploadBucket
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("PUT", "/dataset/meta/abc-123", bytes.NewReader([]byte("{\"title\": \"Crater Rim\", \"defaultContextImage\": \"File1.jpg\"}"))) // Should return empty list, datasets.json fails to download
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (DatasetHandler_List) ¶
const datasetsJSON = `{
"datasets": [
{
"dataset_id": "590340",
"title": "the title",
"site": "the site",
"target": "the target",
"group": "groupie",
"drive_id": 292,
"site_id": 1,
"target_id": "?",
"sol": "",
"rtt": 590340,
"sclk": 0,
"context_image": "MCC-234.png",
"location_count": 446,
"data_file_size": 2699388,
"context_images": 1,
"tiff_context_images": 0,
"normal_spectra": 882,
"dwell_spectra": 0,
"bulk_spectra": 2,
"max_spectra": 2,
"pseudo_intensities": 441,
"detector_config": "PIXL"
},
{
"dataset_id": "983561",
"group": "the-group",
"drive_id": 36,
"site_id": 1,
"target_id": "?",
"sol": "",
"rtt": 983561,
"sclk": 0,
"context_image": "MCC-66.png",
"location_count": 313,
"data_file_size": 1840596,
"context_images": 5,
"tiff_context_images": 0,
"normal_spectra": 612,
"dwell_spectra": 0,
"bulk_spectra": 2,
"max_spectra": 2,
"pseudo_intensities": 306,
"detector_config": "PIXL",
"create_unixtime_sec": 1234567890
},
{
"dataset_id": "222333",
"group": "another-group",
"drive_id": 36,
"site_id": 1,
"target_id": "?",
"sol": "30",
"rtt": 222333,
"sclk": 0,
"context_image": "MCC-66.png",
"location_count": 313,
"data_file_size": 1840596,
"context_images": 5,
"tiff_context_images": 0,
"normal_spectra": 612,
"dwell_spectra": 0,
"bulk_spectra": 2,
"max_spectra": 2,
"pseudo_intensities": 306,
"detector_config": "PIXL",
"create_unixtime_sec": 1234567891
}
]
}`
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(ConfigBucketForUnitTest), Key: aws.String("PixliseConfig/datasets.json"),
},
{
Bucket: aws.String(ConfigBucketForUnitTest), Key: aws.String("PixliseConfig/datasets.json"),
},
{
Bucket: aws.String(ConfigBucketForUnitTest), Key: aws.String("PixliseConfig/datasets.json"),
},
{
Bucket: aws.String(ConfigBucketForUnitTest), Key: aws.String("PixliseConfig/datasets.json"),
},
{
Bucket: aws.String(ConfigBucketForUnitTest), Key: aws.String("PixliseConfig/datasets.json"),
},
{
Bucket: aws.String(ConfigBucketForUnitTest), Key: aws.String("PixliseConfig/datasets.json"),
},
{
Bucket: aws.String(ConfigBucketForUnitTest), Key: aws.String("PixliseConfig/datasets.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(datasetsJSON))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(datasetsJSON))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(datasetsJSON))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(datasetsJSON))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(datasetsJSON))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(datasetsJSON))),
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
mockUser := pixlUser.UserInfo{
Name: "Niko Bellic",
UserID: "600f2a0806b6c70071d3d174",
Email: "niko@rockstar.com",
Permissions: map[string]bool{
"access:the-group": true,
"access:groupie": true,
"access:another-group": true,
"access:super-admin": true,
"read:data-analysis": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/dataset", nil) // Should return empty list, datasets.json fails to download
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("GET", "/dataset", nil) // Should return all items. NOTE: tests link creation (though no host name specified so won't have a valid link)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Request again with a different user, which excludes groups
delete(mockUser.Permissions, "access:another-group")
fmt.Printf("Permissions left: %v\n", len(mockUser.Permissions))
req, _ = http.NewRequest("GET", "/dataset", nil) // Should return less based on group difference. NOTE: tests link creation (though no host name specified so won't have a valid link)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("GET", "/dataset?normal_spectra=882&detector_config=PIXL", nil) // Should filter with query string. NOTE: tests link creation (though no host name specified so won't have a valid link)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("GET", "/dataset?detector_config=Breadboard", nil) // Should return empty list, no items match query
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("GET", "/dataset?group_id=the-group|another", nil) // Should return item with the-group as its group id
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("GET", "/dataset?title=he", nil) // Should return the one with title that contains "he" - we only have 1 title set
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 [] 200 [ { "dataset_id": "590340", "group": "groupie", "drive_id": 292, "site_id": 1, "target_id": "?", "site": "the site", "target": "the target", "title": "the title", "sol": "", "rtt": "000590340", "sclk": 0, "context_image": "MCC-234.png", "location_count": 446, "data_file_size": 2699388, "context_images": 1, "tiff_context_images": 0, "normal_spectra": 882, "dwell_spectra": 0, "bulk_spectra": 2, "max_spectra": 2, "pseudo_intensities": 441, "detector_config": "PIXL", "create_unixtime_sec": 0, "dataset_link": "https:///dataset/download/590340/dataset", "context_image_link": "https:///dataset/download/590340/MCC-234.png" }, { "dataset_id": "983561", "group": "the-group", "drive_id": 36, "site_id": 1, "target_id": "?", "site": "", "target": "", "title": "", "sol": "", "rtt": "000983561", "sclk": 0, "context_image": "MCC-66.png", "location_count": 313, "data_file_size": 1840596, "context_images": 5, "tiff_context_images": 0, "normal_spectra": 612, "dwell_spectra": 0, "bulk_spectra": 2, "max_spectra": 2, "pseudo_intensities": 306, "detector_config": "PIXL", "create_unixtime_sec": 1234567890, "dataset_link": "https:///dataset/download/983561/dataset", "context_image_link": "https:///dataset/download/983561/MCC-66.png" }, { "dataset_id": "222333", "group": "another-group", "drive_id": 36, "site_id": 1, "target_id": "?", "site": "", "target": "", "title": "", "sol": "30", "rtt": "000222333", "sclk": 0, "context_image": "MCC-66.png", "location_count": 313, "data_file_size": 1840596, "context_images": 5, "tiff_context_images": 0, "normal_spectra": 612, "dwell_spectra": 0, "bulk_spectra": 2, "max_spectra": 2, "pseudo_intensities": 306, "detector_config": "PIXL", "create_unixtime_sec": 1234567891, "dataset_link": "https:///dataset/download/222333/dataset", "context_image_link": "https:///dataset/download/222333/MCC-66.png" } ] Permissions left: 4 200 [ { "dataset_id": "590340", "group": "groupie", "drive_id": 292, "site_id": 1, "target_id": "?", "site": "the site", "target": "the target", "title": "the title", "sol": "", "rtt": "000590340", "sclk": 0, "context_image": "MCC-234.png", "location_count": 446, "data_file_size": 2699388, "context_images": 1, "tiff_context_images": 0, "normal_spectra": 882, "dwell_spectra": 0, "bulk_spectra": 2, "max_spectra": 2, "pseudo_intensities": 441, "detector_config": "PIXL", "create_unixtime_sec": 0, "dataset_link": "https:///dataset/download/590340/dataset", "context_image_link": "https:///dataset/download/590340/MCC-234.png" }, { "dataset_id": "983561", "group": "the-group", "drive_id": 36, "site_id": 1, "target_id": "?", "site": "", "target": "", "title": "", "sol": "", "rtt": "000983561", "sclk": 0, "context_image": "MCC-66.png", "location_count": 313, "data_file_size": 1840596, "context_images": 5, "tiff_context_images": 0, "normal_spectra": 612, "dwell_spectra": 0, "bulk_spectra": 2, "max_spectra": 2, "pseudo_intensities": 306, "detector_config": "PIXL", "create_unixtime_sec": 1234567890, "dataset_link": "https:///dataset/download/983561/dataset", "context_image_link": "https:///dataset/download/983561/MCC-66.png" } ] 200 [ { "dataset_id": "590340", "group": "groupie", "drive_id": 292, "site_id": 1, "target_id": "?", "site": "the site", "target": "the target", "title": "the title", "sol": "", "rtt": "000590340", "sclk": 0, "context_image": "MCC-234.png", "location_count": 446, "data_file_size": 2699388, "context_images": 1, "tiff_context_images": 0, "normal_spectra": 882, "dwell_spectra": 0, "bulk_spectra": 2, "max_spectra": 2, "pseudo_intensities": 441, "detector_config": "PIXL", "create_unixtime_sec": 0, "dataset_link": "https:///dataset/download/590340/dataset", "context_image_link": "https:///dataset/download/590340/MCC-234.png" } ] 200 [] 200 [ { "dataset_id": "983561", "group": "the-group", "drive_id": 36, "site_id": 1, "target_id": "?", "site": "", "target": "", "title": "", "sol": "", "rtt": "000983561", "sclk": 0, "context_image": "MCC-66.png", "location_count": 313, "data_file_size": 1840596, "context_images": 5, "tiff_context_images": 0, "normal_spectra": 612, "dwell_spectra": 0, "bulk_spectra": 2, "max_spectra": 2, "pseudo_intensities": 306, "detector_config": "PIXL", "create_unixtime_sec": 1234567890, "dataset_link": "https:///dataset/download/983561/dataset", "context_image_link": "https:///dataset/download/983561/MCC-66.png" } ] 200 [ { "dataset_id": "590340", "group": "groupie", "drive_id": 292, "site_id": 1, "target_id": "?", "site": "the site", "target": "the target", "title": "the title", "sol": "", "rtt": "000590340", "sclk": 0, "context_image": "MCC-234.png", "location_count": 446, "data_file_size": 2699388, "context_images": 1, "tiff_context_images": 0, "normal_spectra": 882, "dwell_spectra": 0, "bulk_spectra": 2, "max_spectra": 2, "pseudo_intensities": 441, "detector_config": "PIXL", "create_unixtime_sec": 0, "dataset_link": "https:///dataset/download/590340/dataset", "context_image_link": "https:///dataset/download/590340/MCC-234.png" } ]
Example (DatasetHandler_MCC_Stream_OK) ¶
const summaryJSON = `{
"dataset_id": "590340",
"group": "groupie",
"drive_id": 292,
"site_id": 1,
"target_id": "?",
"sol": "30",
"rtt": 590340,
"sclk": 0,
"context_image": "MCC-234.png",
"location_count": 446,
"data_file_size": 2699388,
"context_images": 1,
"tiff_context_images": 0,
"normal_spectra": 882,
"dwell_spectra": 0,
"bulk_spectra": 2,
"max_spectra": 2,
"pseudo_intensities": 441,
"detector_config": "PIXL"
}`
mccBytes := []byte{60, 112, 110, 103, 62}
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/summary.json"),
},
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/MCC-234.png"),
},
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/summary.json"),
},
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/MCC-234.png"),
},
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/summary.json"),
},
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/MCC-234.png"),
},
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/summary.json"),
},
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/MCC-455.png"),
},
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/summary.json"),
},
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/indiana-jones.txt"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(summaryJSON))),
},
{
ContentLength: aws.Int64(int64(len(mccBytes))),
Body: ioutil.NopCloser(bytes.NewReader(mccBytes)), // return some printable chars so easier to compare in Output comment
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(summaryJSON))),
},
{
ContentLength: aws.Int64(int64(len(mccBytes))),
Body: ioutil.NopCloser(bytes.NewReader(mccBytes)), // return some printable chars so easier to compare in Output comment
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(summaryJSON))),
},
{
ContentLength: aws.Int64(int64(len(mccBytes))),
Body: ioutil.NopCloser(bytes.NewReader(mccBytes)), // return some printable chars so easier to compare in Output comment
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(summaryJSON))),
},
{
ContentLength: aws.Int64(int64(len(mccBytes))),
Body: ioutil.NopCloser(bytes.NewReader(mccBytes)), // return some printable chars so easier to compare in Output comment
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(summaryJSON))),
},
nil,
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
mockUser := pixlUser.UserInfo{
"Niko Bellic",
"600f2a0806b6c70071d3d174",
"niko@rockstar.com",
map[string]bool{
"access:groupie": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
paths := []string{
"/dataset/download/590340/context-image",
"/dataset/download/590340/context-thumb",
"/dataset/download/590340/context-mark-thumb",
// a different context image
"/dataset/download/590340/MCC-455.png",
// non-existant file
"/dataset/download/590340/indiana-jones.txt",
}
for _, path := range paths {
req, _ := http.NewRequest("GET", path, nil) // Should return empty list, datasets.json fails to download
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
// Make sure the response is the right kind...
fmt.Println(resp.HeaderMap["Content-Disposition"])
fmt.Println(resp.HeaderMap["Content-Length"])
fmt.Println(resp.Body)
}
Output: 200 [attachment; filename="MCC-234.png"] [5] <png> 200 [attachment; filename="MCC-234.png"] [5] <png> 200 [attachment; filename="MCC-234.png"] [5] <png> 200 [attachment; filename="MCC-455.png"] [5] <png> 404 [] [] indiana-jones.txt not found
Example (DatasetHandler_Stream_BadGroup_403) ¶
const summaryJSON = `{
"dataset_id": "590340",
"group": "groupie",
"drive_id": 292,
"site_id": 1,
"target_id": "?",
"sol": "0",
"rtt": 590340,
"sclk": 0,
"context_image": "MCC-234.png",
"location_count": 446,
"data_file_size": 2699388,
"context_images": 1,
"tiff_context_images": 0,
"normal_spectra": 882,
"dwell_spectra": 0,
"bulk_spectra": 2,
"max_spectra": 2,
"pseudo_intensities": 441,
"detector_config": "PIXL"
}`
const publicDatasetsJSON = `{
"590340": {
"dataset_id": "590340",
"public": false,
"public_release_utc_time_sec": 0,
"sol": ""
}
}`
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/summary.json"),
},
{
Bucket: aws.String("config-bucket"), Key: aws.String("PixliseConfig/datasets-auth.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(summaryJSON))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(publicDatasetsJSON))),
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
mockUser := pixlUser.UserInfo{
"Niko Bellic",
"600f2a0806b6c70071d3d174",
"niko@rockstar.com",
map[string]bool{
"access:the-group": true,
"access:super-admin": true,
"read:data-analysis": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/dataset/download/590340/dataset", nil) // Should return empty list, datasets.json fails to download
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 403 dataset 590340 not permitted
Example (DatasetHandler_Stream_BadSummary) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/summary.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
{
Body: ioutil.NopCloser(bytes.NewReader([]byte("bad json"))),
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
mockUser := pixlUser.UserInfo{
"Niko Bellic",
"600f2a0806b6c70071d3d174",
"niko@rockstar.com",
map[string]bool{
"access:groupie": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/dataset/download/590340/dataset", nil) // Should return empty list, datasets.json fails to download
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 500 failed to verify dataset group permission
Example (DatasetHandler_Stream_NoSuchDataset) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/summary.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
mockUser := pixlUser.UserInfo{
"Niko Bellic",
"600f2a0806b6c70071d3d174",
"niko@rockstar.com",
map[string]bool{
"access:groupie": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/dataset/download/590340/dataset", nil) // Should return empty list, datasets.json fails to download
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 590340 not found
Example (DatasetHandler_Stream_OK) ¶
const summaryJSON = `{
"dataset_id": "590340",
"group": "groupie",
"drive_id": 292,
"site_id": 1,
"target_id": "?",
"sol": "0",
"rtt": 590340,
"sclk": 0,
"context_image": "MCC-234.png",
"location_count": 446,
"data_file_size": 2699388,
"context_images": 1,
"tiff_context_images": 0,
"normal_spectra": 882,
"dwell_spectra": 0,
"bulk_spectra": 2,
"max_spectra": 2,
"pseudo_intensities": 441,
"detector_config": "PIXL"
}`
datasetBytes := []byte{50, 60, 61, 62, 70}
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/summary.json"),
},
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/dataset.bin"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(summaryJSON))),
},
{
ContentLength: aws.Int64(int64(len(datasetBytes))),
Body: ioutil.NopCloser(bytes.NewReader(datasetBytes)), // return some printable chars so easier to compare in Output comment
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
mockUser := pixlUser.UserInfo{
"Niko Bellic",
"600f2a0806b6c70071d3d174",
"niko@rockstar.com",
map[string]bool{
"access:groupie": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/dataset/download/590340/dataset", nil) // Should return empty list, datasets.json fails to download
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
// Make sure the response is the right kind...
fmt.Println(resp.HeaderMap["Content-Disposition"])
fmt.Println(resp.HeaderMap["Content-Length"])
fmt.Println(resp.Body)
Output: 200 [attachment; filename="dataset.bin"] [5] 2<=>F
Example (DetectorConfigHandler_Get) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(ConfigBucketForUnitTest), Key: aws.String("DetectorConfig/WeirdDetector/pixlise-config.json"),
},
{
Bucket: aws.String(ConfigBucketForUnitTest), Key: aws.String("DetectorConfig/PetersSuperDetector/pixlise-config.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"minElement": 11,
"maxElement": 92,
"xrfeVLowerBound": 800,
"xrfeVUpperBound": 20000,
"xrfeVResolution": 230,
"windowElement": 4,
"tubeElement": 14,
"mmBeamRadius": 0.3,
"somethingUnknown": 42,
"defaultParams": "-q,xyzPIELKGHTXCRNFSVM7ijsrdpetoubaln -b,0,8,50 -f"
}`))),
},
}
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{Bucket: aws.String(ConfigBucketForUnitTest), Prefix: aws.String("DetectorConfig/PetersSuperDetector/PiquantConfigs/")},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{
{Key: aws.String("DetectorConfig/PetersSuperDetector/PiquantConfigs/V1/config.json")},
{Key: aws.String("DetectorConfig/PetersSuperDetector/PiquantConfigs/2.0/optic.txt")},
{Key: aws.String("DetectorConfig/PetersSuperDetector/PiquantConfigs/2.0/config.json")},
{Key: aws.String("DetectorConfig/PetersSuperDetector/PiquantConfigs/V1/optic.txt")},
{Key: aws.String("DetectorConfig/PetersSuperDetector/PiquantConfigs/v2.1-broken/file.txt")},
},
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/detector-config/WeirdDetector", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("GET", "/detector-config/PetersSuperDetector", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 WeirdDetector not found 200 { "minElement": 11, "maxElement": 92, "xrfeVLowerBound": 800, "xrfeVUpperBound": 20000, "xrfeVResolution": 230, "windowElement": 4, "tubeElement": 14, "defaultParams": "-q,xyzPIELKGHTXCRNFSVM7ijsrdpetoubaln -b,0,8,50 -f", "mmBeamRadius": 0.3, "piquantConfigVersions": [ "V1", "2.0" ] }
Example (DetectorConfigHandler_OtherMethods) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/detector-config/WeirdDetector", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("PUT", "/detector-config/WeirdDetector", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("DELETE", "/detector-config/WeirdDetector", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 405 405 405
Example (DetectorQuantConfigHandler_GetNotFound) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(ConfigBucketForUnitTest), Key: aws.String("DetectorConfig/WeirdDetector/pixlise-config.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/piquant/config/WeirdDetector/version/v1.1", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 WeirdDetector not found
Example (DetectorQuantConfigHandler_GetOK) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(ConfigBucketForUnitTest), Key: aws.String("DetectorConfig/PetersSuperDetector/pixlise-config.json"),
},
{
Bucket: aws.String(ConfigBucketForUnitTest), Key: aws.String("DetectorConfig/PetersSuperDetector/PiquantConfigs/ver1.1/config.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"minElement": 11,
"maxElement": 92,
"xrfeVLowerBound": 800,
"xrfeVUpperBound": 20000,
"xrfeVResolution": 230,
"windowElement": 4,
"tubeElement": 14,
"somethingUnknown": 42,
"defaultParams": "-q,xyzPIELKGHTXCRNFSVM7ijsrdpetoubaln -b,0,8,50 -f",
"mmBeamRadius": 0.007
}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"description": "Peters super detector config",
"config-file": "config.msa",
"optic-efficiency": "optical.csv",
"calibration-file": "calibration.csv",
"standards-file": "standards.csv"
}`))),
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/piquant/config/PetersSuperDetector/version/ver1.1", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 { "pixliseConfig": { "minElement": 11, "maxElement": 92, "xrfeVLowerBound": 800, "xrfeVUpperBound": 20000, "xrfeVResolution": 230, "windowElement": 4, "tubeElement": 14, "defaultParams": "-q,xyzPIELKGHTXCRNFSVM7ijsrdpetoubaln -b,0,8,50 -f", "mmBeamRadius": 0.007 }, "quantConfig": { "description": "Peters super detector config", "configFile": "config.msa", "opticEfficiencyFile": "optical.csv", "calibrationFile": "calibration.csv", "standardsFile": "standards.csv" } }
Example (DetectorQuantConfigHandler_List) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{Bucket: aws.String(ConfigBucketForUnitTest), Prefix: aws.String("DetectorConfig/")},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{
{Key: aws.String("DetectorConfig/PetersSuperDetector/pixlise-config.json")},
{Key: aws.String("DetectorConfig/PetersSuperDetector/PiquantConfigs/V1/config.json")},
{Key: aws.String("DetectorConfig/PetersSuperDetector/PiquantConfigs/2.0/optic.txt")},
{Key: aws.String("DetectorConfig/PetersSuperDetector/PiquantConfigs/2.0/config.json")},
{Key: aws.String("DetectorConfig/PetersSuperDetector/PiquantConfigs/V1/optic.txt")},
{Key: aws.String("DetectorConfig/PetersSuperDetector/PiquantConfigs/v2.1-broken/file.txt")},
{Key: aws.String("DetectorConfig/AnotherConfig/pixlise-config.json")},
{Key: aws.String("DetectorConfig/AnotherConfig/PiquantConfigs/V1/config.json")},
},
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/piquant/config", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Returns config names in alphabetical order
Output: 200 { "configNames": [ "AnotherConfig", "PetersSuperDetector" ] }
Example (DetectorQuantConfigHandler_OtherMethods) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/piquant/config/WeirdDetector/version/1", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("PUT", "/piquant/config/WeirdDetector/version/1", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("DELETE", "/piquant/config/WeirdDetector/version/1", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 405 405 405
Example (DetectorQuantConfigHandler_VersionList) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{Bucket: aws.String(ConfigBucketForUnitTest), Prefix: aws.String("DetectorConfig/PetersSuperDetector/PiquantConfigs/")},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{
{Key: aws.String("DetectorConfig/PetersSuperDetector/PiquantConfigs/V1/config.json")},
{Key: aws.String("DetectorConfig/PetersSuperDetector/PiquantConfigs/2.0/optic.txt")},
{Key: aws.String("DetectorConfig/PetersSuperDetector/PiquantConfigs/2.0/config.json")},
{Key: aws.String("DetectorConfig/PetersSuperDetector/PiquantConfigs/V1/optic.txt")},
{Key: aws.String("DetectorConfig/PetersSuperDetector/PiquantConfigs/v2.1-broken/file.txt")},
},
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/piquant/config/PetersSuperDetector/versions", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 [ "V1", "2.0" ]
Example (DiffractionHandler_Delete) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(statusS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(statusS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(statusS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(statusS3Path),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil, // No file in S3
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`garbage`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(statusFile))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(statusFile))),
},
}
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(statusS3Path), Body: bytes.NewReader([]byte(`{
"id-1": "not-anomaly"
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
// File missing, 404
req, _ := http.NewRequest("DELETE", "/diffraction/status/rtt-123/new-1", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Incoming is garbage, 500
req, _ = http.NewRequest("DELETE", "/diffraction/status/rtt-123/new-2", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Not found in list
req, _ = http.NewRequest("DELETE", "/diffraction/status/rtt-123/new-3", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// OK
req, _ = http.NewRequest("DELETE", "/diffraction/status/rtt-123/id-2", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 new-1 not found 500 invalid character 'g' looking for beginning of value 404 new-3 not found 200 { "id-1": "not-anomaly" }
Example (DiffractionHandler_DeleteManual) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(manualS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(manualS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(manualS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(manualS3Path),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil, // No file in S3
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`garbage`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(manualFile))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(manualFile))),
},
}
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(manualS3Path), Body: bytes.NewReader([]byte(`{
"peaks": {
"id-1": {
"pmc": 32,
"keV": 5.6
}
}
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
// File missing, 404
req, _ := http.NewRequest("DELETE", "/diffraction/manual/rtt-123/new-1", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Incoming is garbage, 500
req, _ = http.NewRequest("DELETE", "/diffraction/manual/rtt-123/new-2", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Not found in list
req, _ = http.NewRequest("DELETE", "/diffraction/manual/rtt-123/new-3", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// OK
req, _ = http.NewRequest("DELETE", "/diffraction/manual/rtt-123/id-2", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 new-1 not found 500 invalid character 'g' looking for beginning of value 404 new-3 not found 200 { "id-1": { "pmc": 32, "keV": 5.6 } }
Example (DiffractionHandler_ListAccepted) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(statusS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(statusS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(statusS3Path),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil, // No file in S3
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`garbage`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(statusFile))),
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/diffraction/status/rtt-123", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("GET", "/diffraction/status/rtt-123", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("GET", "/diffraction/status/rtt-123", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 {} 500 invalid character 'g' looking for beginning of value 200 { "id-1": "not-anomaly", "id-2": "intensity-mismatch" }
Example (DiffractionHandler_ListManual) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(manualS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(manualS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(manualS3Path),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil, // No file in S3
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`garbage`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(manualFile))),
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/diffraction/manual/rtt-123", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("GET", "/diffraction/manual/rtt-123", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("GET", "/diffraction/manual/rtt-123", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 {} 500 invalid character 'g' looking for beginning of value 200 { "id-1": { "pmc": 32, "keV": 5.6 }, "id-2": { "pmc": 44, "keV": 7.7 } }
Example (DiffractionHandler_PostManual) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(manualS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(manualS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(manualS3Path),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil, // No file in S3
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`garbage`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(manualFile))),
},
}
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(manualS3Path), Body: bytes.NewReader([]byte(`{
"peaks": {
"new1": {
"pmc": 35,
"keV": 5.5
}
}
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(manualS3Path), Body: bytes.NewReader([]byte(`{
"peaks": {
"new2": {
"pmc": 35,
"keV": 5.5
}
}
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(manualS3Path), Body: bytes.NewReader([]byte(`{
"peaks": {
"id-1": {
"pmc": 32,
"keV": 5.6
},
"id-2": {
"pmc": 44,
"keV": 7.7
},
"new3": {
"pmc": 35,
"keV": 5.5
}
}
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
{},
{},
}
idGen := services.MockIDGenerator{
IDs: []string{"new1", "new2", "new3", "new4"},
}
svcs := MakeMockSvcs(&mockS3, &idGen, nil, nil)
apiRouter := MakeRouter(svcs)
postItem := `{
"pmc": 35,
"keV": 5.5
}`
// File missing, first go, should just create
req, _ := http.NewRequest("POST", "/diffraction/manual/rtt-123", bytes.NewReader([]byte(postItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Should ignore the fact that the incoming file is garbage, and write a new one
req, _ = http.NewRequest("POST", "/diffraction/manual/rtt-123", bytes.NewReader([]byte(postItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// New appended to existing list
req, _ = http.NewRequest("POST", "/diffraction/manual/rtt-123", bytes.NewReader([]byte(postItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 { "new1": { "pmc": 35, "keV": 5.5 } } 200 { "new2": { "pmc": 35, "keV": 5.5 } } 200 { "id-1": { "pmc": 32, "keV": 5.6 }, "id-2": { "pmc": 44, "keV": 7.7 }, "new3": { "pmc": 35, "keV": 5.5 } }
Example (DiffractionHandler_PostStatuses) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(statusS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(statusS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(statusS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(statusS3Path),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil, // No file in S3
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`garbage`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(statusFile))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(statusFile))),
},
}
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(statusS3Path), Body: bytes.NewReader([]byte(`{
"new-1": "diffraction"
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(statusS3Path), Body: bytes.NewReader([]byte(`{
"new-2": "other"
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(statusS3Path), Body: bytes.NewReader([]byte(`{
"id-1": "not-anomaly",
"id-2": "intensity-mismatch",
"new-3": "weird-one"
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(statusS3Path), Body: bytes.NewReader([]byte(`{
"id-1": "not-anomaly",
"id-2": "not-anomaly"
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
{},
{},
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
// File missing, first go, should just create
req, _ := http.NewRequest("POST", "/diffraction/status/diffraction/rtt-123/new-1", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Should ignore the fact that the incoming file is garbage, and write a new one
req, _ = http.NewRequest("POST", "/diffraction/status/other/rtt-123/new-2", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// New appended to existing list
req, _ = http.NewRequest("POST", "/diffraction/status/weird-one/rtt-123/new-3", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Checking no duplicates made
req, _ = http.NewRequest("POST", "/diffraction/status/not-anomaly/rtt-123/id-2", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 { "new-1": "diffraction" } 200 { "new-2": "other" } 200 { "id-1": "not-anomaly", "id-2": "intensity-mismatch", "new-3": "weird-one" } 200 { "id-1": "not-anomaly", "id-2": "not-anomaly" }
Example (ElementSetHandler_Delete) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemUserS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemUserS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemUserS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemUserS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemSharedS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemSharedS3Path),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(elemFile))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(elemFile))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(elemFile))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"55": {
"name": "The shared item",
"lines": [
{
"Z": 13,
"K": true,
"L": false,
"M": false,
"Esc": false
}
],
"creator": {
"name": "The user who shared",
"user_id": "600f2a0806b6c70071d3d174",
"email": ""
}
}
}`))),
},
}
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
s3.PutObjectInput{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemUserS3Path), Body: bytes.NewReader([]byte(`{
"44": {
"name": "My Tuesday Elements",
"lines": [
{
"Z": 13,
"K": true,
"L": false,
"M": false,
"Esc": false
},
{
"Z": 14,
"K": true,
"L": false,
"M": false,
"Esc": false
}
],
"shared": false,
"creator": {
"name": "Tom",
"user_id": "u124",
"email": ""
},
"create_unix_time_sec": 1668100001,
"mod_unix_time_sec": 1668100001
}
}`)),
},
s3.PutObjectInput{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemSharedS3Path), Body: bytes.NewReader([]byte(`{}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
&s3.PutObjectOutput{},
&s3.PutObjectOutput{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
// Delete finds file missing, ERROR
req, _ := http.NewRequest("DELETE", "/element-set/13", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Delete finds empty file, ERROR
req, _ = http.NewRequest("DELETE", "/element-set/13", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Delete cant find item, ERROR
req, _ = http.NewRequest("DELETE", "/element-set/15", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Delete finds item, OK
req, _ = http.NewRequest("DELETE", "/element-set/13", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Delete shared item but from wrong user, ERROR
req, _ = http.NewRequest("DELETE", "/element-set/shared-13", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Delete shared item, OK
req, _ = http.NewRequest("DELETE", "/element-set/shared-55", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 13 not found 404 13 not found 404 15 not found 200 401 13 not owned by 600f2a0806b6c70071d3d174 200
Example (ElementSetHandler_Post) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemUserS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemUserS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemUserS3Path),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(elemFile))),
},
}
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
s3.PutObjectInput{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemUserS3Path), Body: bytes.NewReader([]byte(`{
"55": {
"name": "Latest set",
"lines": [
{
"Z": 43,
"K": true,
"L": true,
"M": true,
"Esc": false
}
],
"shared": false,
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668142579,
"mod_unix_time_sec": 1668142579
}
}`)),
},
s3.PutObjectInput{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemUserS3Path), Body: bytes.NewReader([]byte(`{
"56": {
"name": "Latest set",
"lines": [
{
"Z": 43,
"K": true,
"L": true,
"M": true,
"Esc": false
}
],
"shared": false,
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668142580,
"mod_unix_time_sec": 1668142580
}
}`)),
},
s3.PutObjectInput{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemUserS3Path), Body: bytes.NewReader([]byte(`{
"13": {
"name": "My Monday Elements",
"lines": [
{
"Z": 26,
"K": true,
"L": true,
"M": false,
"Esc": false
},
{
"Z": 20,
"K": true,
"L": false,
"M": false,
"Esc": false
}
],
"shared": false,
"creator": {
"name": "Peter",
"user_id": "u123",
"email": ""
},
"create_unix_time_sec": 1668100000,
"mod_unix_time_sec": 1668100000
},
"44": {
"name": "My Tuesday Elements",
"lines": [
{
"Z": 13,
"K": true,
"L": false,
"M": false,
"Esc": false
},
{
"Z": 14,
"K": true,
"L": false,
"M": false,
"Esc": false
}
],
"shared": false,
"creator": {
"name": "Tom",
"user_id": "u124",
"email": ""
},
"create_unix_time_sec": 1668100001,
"mod_unix_time_sec": 1668100001
},
"57": {
"name": "Latest set",
"lines": [
{
"Z": 43,
"K": true,
"L": true,
"M": true,
"Esc": false
}
],
"shared": false,
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668142581,
"mod_unix_time_sec": 1668142581
}
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
&s3.PutObjectOutput{},
&s3.PutObjectOutput{},
&s3.PutObjectOutput{},
}
idGen := services.MockIDGenerator{
IDs: []string{"55", "56", "57"},
}
svcs := MakeMockSvcs(&mockS3, &idGen, nil, nil)
svcs.TimeStamper = ×tamper.MockTimeNowStamper{
QueuedTimeStamps: []int64{1668142579, 1668142580, 1668142581},
}
apiRouter := MakeRouter(svcs)
const postItem = `{
"name": "Latest set",
"lines": [
{
"Z": 43,
"K": true,
"L": true,
"M": true,
"Esc": false
}
]
}`
// File not in S3, should work
req, _ := http.NewRequest("POST", "/element-set", bytes.NewReader([]byte(postItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// File empty in S3, should work
req, _ = http.NewRequest("POST", "/element-set", bytes.NewReader([]byte(postItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// File doesn't contain item by this name, should work (add)
req, _ = http.NewRequest("POST", "/element-set", bytes.NewReader([]byte(postItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 200 200
Example (ElementSetHandler_Put) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemUserS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemUserS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemUserS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemUserS3Path),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(elemFile))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(elemFile))),
},
}
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
s3.PutObjectInput{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(elemUserS3Path), Body: bytes.NewReader([]byte(`{
"13": {
"name": "My Monday Elements",
"lines": [
{
"Z": 26,
"K": true,
"L": true,
"M": false,
"Esc": false
},
{
"Z": 20,
"K": true,
"L": false,
"M": false,
"Esc": false
}
],
"shared": false,
"creator": {
"name": "Peter",
"user_id": "u123",
"email": ""
},
"create_unix_time_sec": 1668100000,
"mod_unix_time_sec": 1668100000
},
"44": {
"name": "Latest set",
"lines": [
{
"Z": 43,
"K": true,
"L": true,
"M": true,
"Esc": false
}
],
"shared": false,
"creator": {
"name": "Tom",
"user_id": "u124",
"email": ""
},
"create_unix_time_sec": 1668100001,
"mod_unix_time_sec": 1668142579
}
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
&s3.PutObjectOutput{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.TimeStamper = ×tamper.MockTimeNowStamper{
QueuedTimeStamps: []int64{1668142579},
}
apiRouter := MakeRouter(svcs)
const putItem = `{
"name": "Latest set",
"lines": [
{
"Z": 43,
"K": true,
"L": true,
"M": true,
"Esc": false
}
]
}`
// File not in S3, should say not found
req, _ := http.NewRequest("PUT", "/element-set/44", bytes.NewReader([]byte(putItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// File empty in S3, should say not found
req, _ = http.NewRequest("PUT", "/element-set/44", bytes.NewReader([]byte(putItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// File already contains this id, should overwrite
req, _ = http.NewRequest("PUT", "/element-set/44", bytes.NewReader([]byte(putItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// File doesn't contain this id, should say not found
req, _ = http.NewRequest("PUT", "/element-set/59", bytes.NewReader([]byte(putItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Can't edit shared ids
req, _ = http.NewRequest("PUT", "/element-set/shared-59", bytes.NewReader([]byte(putItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 44 not found 404 44 not found 200 404 59 not found 400 Cannot edit shared items
Example (IsABQuant) ¶
fmt.Printf("%v\n", isABQuant([]string{
"header",
"PMC,filename,Ca_%,Ca_err",
"100,Normal_A,1.2,1.1",
"100,Normal_B,1.4,1.2",
"101,Normal_A,1.3,1.2",
"101,Normal_B,1.6,1.6",
}, 1))
fmt.Printf("%v\n", isABQuant([]string{
"header",
"PMC,filename,Ca_%,Ca_err",
"100,Normal_A,1.2,1.1",
"101,Normal_A,1.3,1.2",
"100,Normal_B,1.4,1.2",
"101,Normal_B,1.6,1.6",
}, 1))
fmt.Printf("%v\n", isABQuant([]string{
"header",
"PMC,filename,Ca_%,Ca_err",
"100,Normal_Combined,1.2,1.1",
"101,Normal_Combined,1.3,1.2",
}, 1))
Output: true true false
Example (MatchesSearch) ¶
ds := datasetModel.SummaryFileData{
DatasetID: "590340",
Group: "the-group",
DriveID: 292,
SiteID: 1,
TargetID: "?",
SOL: "10",
RTT: 590340,
SCLK: 123456,
ContextImage: "MCC-234.png",
LocationCount: 446,
DataFileSize: 2699388,
ContextImages: 1,
NormalSpectra: 882,
DwellSpectra: 0,
BulkSpectra: 2,
MaxSpectra: 2,
PseudoIntensities: 441,
DetectorConfig: "PIXL",
}
queryItems := [][]queryItem{
{queryItem{"location_count", "=", "446"}},
{queryItem{"location_count", "=", "445"}},
{queryItem{"location_count", ">", "445"}},
{queryItem{"location_count", "<", "500"}},
{queryItem{"dataset_id", ">", "590300"}},
{queryItem{"sol", ">", "7"}, queryItem{"sol", "<", "141"}},
{queryItem{"location_count", "=", "446"}, queryItem{"detector_config", "=", "PIXL"}},
{
queryItem{"location_count", "=", "446"},
queryItem{"sol", "=", "10"},
queryItem{"rtt", "=", "1590340"},
queryItem{"sclk", ">", "123450"},
queryItem{"data_file_size", ">", "2600000"},
queryItem{"normal_spectra", ">", "800"},
queryItem{"drive_id", ">", "290"},
queryItem{"site_id", "=", "1"},
},
{
queryItem{"location_count", "=", "446"},
queryItem{"sol", "=", "10"},
queryItem{"rtt", "=", "590340"},
queryItem{"sclk", ">", "123450"},
queryItem{"data_file_size", ">", "2600000"},
queryItem{"normal_spectra", ">", "800"},
queryItem{"drive_id", ">", "292"},
queryItem{"site_id", "=", "1"},
},
{},
{queryItem{"group_id", "=", "group1|the-group|anotherone"}},
{queryItem{"group_id", "=", "group1|not-the-group|anotherone"}},
}
for _, q := range queryItems {
match, err := matchesSearch(q, ds)
fmt.Printf("%v|%v\n", err, match)
}
Output: <nil>|true <nil>|false <nil>|true <nil>|true Failed to compare dataset_id, can only use = for values "590300", "590340"|false <nil>|true <nil>|true <nil>|false <nil>|false <nil>|true <nil>|true <nil>|false
Example (ParseQueryParams) ¶
params := []map[string]string{
map[string]string{"unknown": "field"},
map[string]string{"location_count": "30"},
map[string]string{"location_count": "lt|550"},
map[string]string{"location_count": "gt|1234"},
map[string]string{"location_count": "bw|10|33"},
map[string]string{"dataset_id": "30"},
map[string]string{"dataset_id": "lt|30"},
map[string]string{"dataset_id": "30", "whatever": "field", "location_count": "gt|1234"},
map[string]string{"dataset_id": "30", "location_count": "gt|1234", "whatever": "value"},
}
for _, v := range params {
q, err := parseQueryParams(v)
fmt.Printf("%v|%v\n", err, q)
}
Output: Search not permitted on field: unknown|[] <nil>|[{location_count = 30}] <nil>|[{location_count < 550}] <nil>|[{location_count > 1234}] <nil>|[{location_count > 10} {location_count < 33}] <nil>|[{dataset_id = 30}] <nil>|[{dataset_id < 30}] Search not permitted on field: whatever|[] Search not permitted on field: whatever|[]
Example (PiquantDownloadHandler_List) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
const artifactBucket = "our-artifact-bucket"
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{
Bucket: aws.String(artifactBucket), Prefix: aws.String("piquant/"),
},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{
{Key: aws.String("piquant/invalid-path.txt"), LastModified: aws.Time(time.Unix(1597124080, 0)), Size: aws.Int64(12)},
{Key: aws.String("piquant/piquant-linux-2.7.1.zip"), LastModified: aws.Time(time.Unix(1597124080, 0)), Size: aws.Int64(1234)},
{Key: aws.String("piquant/piquant-windows-2.6.0.zip"), LastModified: aws.Time(time.Unix(1597124000, 0)), Size: aws.Int64(12345)},
},
},
}
var mockSigner awsutil.MockSigner
mockSigner.Urls = []string{"http://signed-url.com/file1.zip", "http://signed-url.com/file2.zip"}
svcs := MakeMockSvcs(&mockS3, nil, &mockSigner, nil)
svcs.Config.BuildsBucket = artifactBucket
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/piquant/download", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 { "downloadItems": [ { "buildVersion": "2.7.1", "buildDateUnixSec": 1597124080, "fileName": "piquant-linux-2.7.1.zip", "fileSizeBytes": 1234, "downloadUrl": "http://signed-url.com/file1.zip", "os": "linux" }, { "buildVersion": "2.6.0", "buildDateUnixSec": 1597124000, "fileName": "piquant-windows-2.6.0.zip", "fileSizeBytes": 12345, "downloadUrl": "http://signed-url.com/file2.zip", "os": "windows" } ] }
Example (PiquantDownloadHandler_OtherMethods) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/piquant/download", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("PUT", "/piquant/download", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("DELETE", "/piquant/download", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("GET", "/piquant/download/some-id", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 405 405 405 404 404 page not found
Example (PiquantHandler_GetVersion) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(ConfigBucketForUnitTest), Key: aws.String("PixliseConfig/piquant-version.json"),
},
{
Bucket: aws.String(ConfigBucketForUnitTest), Key: aws.String("PixliseConfig/piquant-version.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"version": "registry.github.com/pixlise/piquant/runner:3.0.7-ALPHA",
"changedUnixTimeSec": 1234567890,
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
}
}`))),
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Config.PiquantDockerImage = "registry.github.com/pixlise/piquant/runner:3.0.8-ALPHA"
apiRouter := MakeRouter(svcs)
// Success, we have config var set, returns that
req, _ := http.NewRequest("GET", "/piquant/version", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Success, S3 overrides config var
req, _ = http.NewRequest("GET", "/piquant/version", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 { "version": "registry.github.com/pixlise/piquant/runner:3.0.8-ALPHA", "changedUnixTimeSec": 0, "creator": { "name": "", "user_id": "", "email": "" } } 200 { "version": "registry.github.com/pixlise/piquant/runner:3.0.7-ALPHA", "changedUnixTimeSec": 1234567890, "creator": { "name": "Niko Bellic", "user_id": "600f2a0806b6c70071d3d174", "email": "niko@spicule.co.uk" } }
Example (PiquantHandler_GetVersion_NoConfigVar) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(ConfigBucketForUnitTest), Key: aws.String("PixliseConfig/piquant-version.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
// Fails, no S3 and no config var
req, _ := http.NewRequest("GET", "/piquant/version", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 PIQUANT version not found
Example (PiquantHandler_SetVersion) ¶
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
//fmt.Println(string(expBinBytes))
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(ConfigBucketForUnitTest), Key: aws.String("PixliseConfig/piquant-version.json"), Body: bytes.NewReader([]byte(`{
"version": "registry.github.com/pixlise/piquant/runner:3.0.7-ALPHA",
"changedUnixTimeSec": 1234567777,
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
}
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.TimeStamper = ×tamper.MockTimeNowStamper{
QueuedTimeStamps: []int64{1234567777},
}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/piquant/version", bytes.NewReader([]byte(`{
"version": "registry.github.com/pixlise/piquant/runner:3.0.7-ALPHA"
}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (QuantHandler_BlessUserQuant) ¶
This is different, because it has to implicitly do a share of the quantification!
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// Getting the quant summary to verify it exists
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
// Share verifies that summary exists
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/summary-job2.json"),
},
{
// Post sharing, bless checks that shared summary exists
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/shared/rtt-456/Quantifications/summary-job2.json"),
},
{
// Getting previous blessed list
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/shared/rtt-456/Quantifications/blessed-quant.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"shared": false,
"params": {
"pmcsCount": 93,
"name": "my test quant",
"dataBucket": "dev-pixlise-data",
"datasetPath": "Datasets/rtt-456/5x5dataset.bin",
"datasetID": "rtt-456",
"jobBucket": "dev-pixlise-piquant-jobs",
"detectorConfig": "PIXL",
"elements": [
"Sc",
"Cr"
],
"parameters": "-q,pPIETXCFsr -b,0,12,60,910,280,16",
"runTimeSec": 120,
"coresPerNode": 6,
"startUnixTime": 1589948988,
"creator": {
"name": "peternemere",
"user_id": "600f2a0806b6c70071d3d174"
},
"roiID": "ZcH49SYZ",
"elementSetID": ""
},
"elements": ["Sc", "Cr"],
"jobId": "job2",
"status": "complete",
"message": "Nodes ran: 1",
"endUnixTime": 1589949035,
"outputFilePath": "UserContent/user-1/rtt-456/Quantifications",
"piquantLogList": [
"https://dev-pixlise-piquant-jobs.s3.us-east-1.amazonaws.com/Jobs/UC2Bchyz/piquant-logs/node00001.pmcs_stdout.log",
"https://dev-pixlise-piquant-jobs.s3.us-east-1.amazonaws.com/Jobs/UC2Bchyz/piquant-logs/node00001.pmcs_threads.log"
]
}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"shared": true,
"params": {
"pmcsCount": 93,
"name": "my test quant",
"dataBucket": "dev-pixlise-data",
"datasetPath": "Datasets/rtt-456/5x5dataset.bin",
"datasetID": "rtt-456",
"jobBucket": "dev-pixlise-piquant-jobs",
"detectorConfig": "PIXL",
"elements": [
"Sc",
"Cr"
],
"parameters": "-q,pPIETXCFsr -b,0,12,60,910,280,16",
"runTimeSec": 120,
"coresPerNode": 6,
"startUnixTime": 1589948988,
"creator": {
"name": "peternemere",
"user_id": "600f2a0806b6c70071d3d174"
},
"roiID": "ZcH49SYZ",
"elementSetID": ""
},
"elements": ["Sc", "Cr"],
"jobId": "job2",
"status": "complete",
"message": "Nodes ran: 1",
"endUnixTime": 1589949035,
"outputFilePath": "UserContent/user-1/rtt-456/Quantifications",
"piquantLogList": [
"https://dev-pixlise-piquant-jobs.s3.us-east-1.amazonaws.com/Jobs/UC2Bchyz/piquant-logs/node00001.pmcs_stdout.log",
"https://dev-pixlise-piquant-jobs.s3.us-east-1.amazonaws.com/Jobs/UC2Bchyz/piquant-logs/node00001.pmcs_threads.log"
]
}`))),
},
nil,
}
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/shared/rtt-456/Quantifications/blessed-quant.json"), Body: bytes.NewReader([]byte(`{
"history": [
{
"version": 1,
"blessedAt": 1234567890,
"userId": "600f2a0806b6c70071d3d174",
"userName": "Niko Bellic",
"jobId": "job2"
}
]
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
// Copying object (the sharing operation)
mockS3.ExpCopyObjectInput = []s3.CopyObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest),
Key: aws.String("UserContent/shared/rtt-456/Quantifications/job2.bin"),
CopySource: aws.String(UsersBucketForUnitTest + "/UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/job2.bin"),
},
{
Bucket: aws.String(UsersBucketForUnitTest),
Key: aws.String("UserContent/shared/rtt-456/Quantifications/summary-job2.json"),
CopySource: aws.String(UsersBucketForUnitTest + "/UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/summary-job2.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest),
Key: aws.String("UserContent/shared/rtt-456/Quantifications/job2.csv"),
CopySource: aws.String(UsersBucketForUnitTest + "/UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/job2.csv"),
},
}
mockS3.QueuedCopyObjectOutput = []*s3.CopyObjectOutput{
{},
{},
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.TimeStamper = ×tamper.MockTimeNowStamper{
QueuedTimeStamps: []int64{1234567890},
}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/quantification/bless/rtt-456/job2", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (QuantHandler_Comparison_BadReqBody) ¶
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/quantification/comparison-for-roi/dataset-123/roi-567", bytes.NewReader([]byte(`{quantIDs":["quant-345", "quant-789"]}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("POST", "/quantification/comparison-for-roi/dataset-123/roi-567", bytes.NewReader([]byte(`{"quantIDs":[]}`)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 400 Request body invalid 400 Requested with 0 quant IDs
Example (QuantHandler_Comparison_DatasetNotFound) ¶
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
getRequests, getResponses := prepROICompareGetCalls()
// Blank out the dataset
getResponses[1] = nil
mockS3.ExpGetObjectInput = getRequests
mockS3.QueuedGetObjectOutput = getResponses
mockS3.AllowGetInAnyOrder = true
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/quantification/comparison-for-roi/dataset-123/roi-567", bytes.NewReader([]byte(`{"quantIDs":["quant-345", "quant-789"]}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: dataset.bin <nil> combined.bin <nil> 404 Failed to download dataset: NoSuchKey: Returning error from GetObject
Example (QuantHandler_Comparison_OK) ¶
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
getRequests, getResponses := prepROICompareGetCalls()
mockS3.ExpGetObjectInput = getRequests
mockS3.QueuedGetObjectOutput = getResponses
mockS3.AllowGetInAnyOrder = true
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/quantification/comparison-for-roi/dataset-123/roi-567", bytes.NewReader([]byte(`{"quantIDs":["quant-345", "quant-789"]}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// This'll read PMC 90 and 95 and do the averaging of those... Deliberately different to the calculateTotals tests!
Output: dataset.bin <nil> combined.bin <nil> 200 { "roiID": "roi-567", "quantTables": [ { "quantID": "quant-345", "quantName": "quant test v6 Al \u003e 100%", "elementWeights": { "CaO_%": 7.6938, "FeO-T_%": 12.49375, "SiO2_%": 40.1224, "TiO2_%": 0.28710002 } }, { "quantID": "quant-789", "quantName": "quant test v6 Al \u003e 100%", "elementWeights": { "CaO_%": 7.6938, "FeO-T_%": 12.49375, "SiO2_%": 40.1224, "TiO2_%": 0.28710002 } } ] }
Example (QuantHandler_Comparison_ROINotFound) ¶
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
getRequests, getResponses := prepROICompareGetCalls()
// Blank out the ROI
getResponses[0] = nil
mockS3.ExpGetObjectInput = getRequests
mockS3.QueuedGetObjectOutput = getResponses
mockS3.AllowGetInAnyOrder = true
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/quantification/comparison-for-roi/dataset-123/roi-567", bytes.NewReader([]byte(`{"quantIDs":["quant-345", "quant-789"]}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: dataset.bin <nil> combined.bin <nil> 404 ROI ID roi-567 not found
Example (QuantHandler_Comparison_RemainingPointsCheckIssue) ¶
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/quantification/comparison-for-roi/dataset-123/roi-567", bytes.NewReader([]byte(`{"quantIDs":["quant-345", "quant-789"], "remainingPointsPMCs": [4,6,88]}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("POST", "/quantification/comparison-for-roi/dataset-123/RemainingPoints", bytes.NewReader([]byte(`{"quantIDs":["quant-345", "quant-789"]}`)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 400 Unexpected PMCs supplied for ROI: roi-567 400 No PMCs supplied for RemainingPoints ROI
Example (QuantHandler_DeleteUserJob) ¶
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.AllowDeleteInAnyOrder = true
// Listing log files for each deletion
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String("UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/job2-logs/"),
},
}
// First has logs, second has none (old style quant), third has 1 file
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{
{Key: aws.String("UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/job2-logs/log001.txt")},
{Key: aws.String("UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/job2-logs/log002.txt")},
{Key: aws.String("UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/job2-logs/log001_another.txt")},
},
},
}
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/summary-job2.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"shared": false,
"params": {
"pmcsCount": 93,
"name": "my test quant",
"dataBucket": "dev-pixlise-data",
"datasetPath": "Datasets/rtt-456/5x5dataset.bin",
"datasetID": "rtt-456",
"jobBucket": "dev-pixlise-piquant-jobs",
"detectorConfig": "PIXL",
"elements": [
"Sc",
"Cr"
],
"parameters": "-q,pPIETXCFsr -b,0,12,60,910,280,16",
"runTimeSec": 120,
"coresPerNode": 6,
"startUnixTime": 1589948988,
"creator": {
"name": "peternemere",
"user_id": "600f2a0806b6c70071d3d174"
},
"roiID": "ZcH49SYZ",
"elementSetID": ""
},
"elements": ["Sc", "Cr"],
"jobId": "job2",
"status": "complete",
"message": "Nodes ran: 1",
"endUnixTime": 1589949035,
"outputFilePath": "UserContent/user-1/rtt-456/Quantifications",
"piquantLogList": [
"https://dev-pixlise-piquant-jobs.s3.us-east-1.amazonaws.com/Jobs/UC2Bchyz/piquant-logs/node00001.pmcs_stdout.log",
"https://dev-pixlise-piquant-jobs.s3.us-east-1.amazonaws.com/Jobs/UC2Bchyz/piquant-logs/node00001.pmcs_threads.log"
]
}`))),
},
}
mockS3.ExpDeleteObjectInput = []s3.DeleteObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/summary-job2.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/job2.bin"),
},
{
Bucket: aws.String(jobBucketForUnitTest), Key: aws.String("JobStatus/rtt-456/job2-status.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/job2.csv"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/job2-logs/log001.txt"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/job2-logs/log002.txt"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/job2-logs/log001_another.txt"),
},
}
mockS3.QueuedDeleteObjectOutput = []*s3.DeleteObjectOutput{
{},
{},
{},
{},
{},
{},
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
// Existant job, OK
req, _ := http.NewRequest("DELETE", "/quantification/rtt-456/job2", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (QuantHandler_DeleteUserJobNotExist) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/summary-job1.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
// Non-existant job, ERROR
req, _ := http.NewRequest("DELETE", "/quantification/rtt-456/job1", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 job1 not found
Example (QuantHandler_MultiQuantCombine_CombineIncompatible) ¶
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// Listing quants for name uniqueness check
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/summary-"),
},
/* {
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String("UserContent/shared/dataset-123/Quantifications/summary-"),
},*/*/
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{
{Key: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/summary-job1.json")},
},
},
/* {
Contents: []*s3.Object{
{Key: aws.String("UserContent/shared/dataset-123/Quantifications/summary-job2.json")},
},
},*/},*/
}
getRequests, getResponses := prepCombineGetCalls("AB.bin")
mockS3.ExpGetObjectInput = getRequests
mockS3.QueuedGetObjectOutput = getResponses
mockS3.AllowGetInAnyOrder = true
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/quantification/combine/dataset-123", bytes.NewReader([]byte(`{
"name": "new multi",
"description": "combined quants",
"roiZStack": [
{
"roiID": "roi-first",
"quantificationID": "quant-123"
},
{
"roiID": "roi-second",
"quantificationID": "quant-456"
},
{
"roiID": "shared-roi-third",
"quantificationID": "quant-123"
}
]
}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: dataset <nil> quant1 <nil> quant2 <nil> 400 Detectors don't match other quantifications: quant-456
Example (QuantHandler_MultiQuantCombine_DatasetLoadError) ¶
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// Listing quants for name uniqueness check
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/summary-"),
},
/* {
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String("UserContent/shared/dataset-123/Quantifications/summary-"),
},*/*/
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{
{Key: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/summary-job1.json")},
},
},
/* {
Contents: []*s3.Object{
{Key: aws.String("UserContent/shared/dataset-123/Quantifications/summary-job2.json")},
},
},*/},*/
}
getRequests, getResponses := prepCombineGetCalls("combined-3elem.bin")
getResponses[2] = nil // Dataset bin file
mockS3.ExpGetObjectInput = getRequests
mockS3.QueuedGetObjectOutput = getResponses
mockS3.AllowGetInAnyOrder = true
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/quantification/combine/dataset-123", bytes.NewReader([]byte(`{
"name": "new multi",
"description": "combined quants",
"roiZStack": [
{
"roiID": "roi-first",
"quantificationID": "quant-123"
},
{
"roiID": "roi-second",
"quantificationID": "quant-456"
},
{
"roiID": "shared-roi-third",
"quantificationID": "quant-123"
}
]
}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: dataset <nil> quant1 <nil> quant2 <nil> 404 Failed to download dataset: NoSuchKey: Returning error from GetObject
Example (QuantHandler_MultiQuantCombine_DuplicateNameWithInProgressQuant) ¶
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// Listing quants for name uniqueness check
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/summary-"),
},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{
{Key: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/summary-job1.json")},
},
},
}
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
// First retrieves the quant summaries that came from uniqueness check, to read the quant name
{
Bucket: aws.String(jobBucketForUnitTest), Key: aws.String("JobSummaries/dataset-123-jobs.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(multiCombineJobSummary))),
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/quantification/combine/dataset-123", bytes.NewReader([]byte(`{
"name": "in progress",
"description": "combined quants",
"roiZStack": [
{
"roiID": "roi-first",
"quantificationID": "quant-123"
},
{
"roiID": "roi-second",
"quantificationID": "quant-456"
},
{
"roiID": "roi-third",
"quantificationID": "quant-123"
}
]
}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 400 Name already used: in progress
Example (QuantHandler_MultiQuantCombine_OK) ¶
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// Listing quants for name uniqueness check
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/summary-"),
},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{
{Key: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/summary-job1.json")},
},
},
}
getRequests, getResponses := prepCombineGetCalls("combined-3elem.bin")
mockS3.ExpGetObjectInput = getRequests
mockS3.QueuedGetObjectOutput = getResponses
expBinBytes := []byte{10, 8, 108, 105, 118, 101, 116, 105, 109, 101, 10, 5, 67, 97, 79, 95, 37, 10, 7, 67, 97, 79, 95, 101, 114, 114, 10, 7, 70, 101, 79, 45, 84, 95, 37, 10, 9, 70, 101, 79, 45, 84, 95, 101, 114, 114, 10, 6, 83, 105, 79, 50, 95, 37, 10, 8, 83, 105, 79, 50, 95, 101, 114, 114, 10, 6, 84, 105, 79, 50, 95, 37, 10, 8, 84, 105, 79, 50, 95, 101, 114, 114, 18, 9, 1, 0, 0, 0, 0, 0, 0, 0, 0, 26, 192, 2, 10, 8, 67, 111, 109, 98, 105, 110, 101, 100, 18, 60, 8, 97, 42, 0, 42, 5, 21, 129, 38, 236, 64, 42, 5, 21, 205, 204, 204, 62, 42, 5, 21, 163, 82, 28, 66, 42, 5, 21, 0, 0, 0, 64, 42, 5, 21, 0, 0, 128, 191, 42, 5, 21, 0, 0, 128, 191, 42, 5, 21, 90, 100, 219, 62, 42, 5, 21, 205, 204, 76, 62, 18, 60, 8, 98, 42, 0, 42, 5, 21, 251, 92, 149, 64, 42, 5, 21, 154, 153, 153, 62, 42, 5, 21, 64, 19, 81, 65, 42, 5, 21, 51, 51, 51, 63, 42, 5, 21, 120, 122, 237, 65, 42, 5, 21, 0, 0, 192, 63, 42, 5, 21, 25, 4, 6, 63, 42, 5, 21, 205, 204, 76, 62, 18, 60, 8, 100, 42, 0, 42, 5, 21, 204, 238, 57, 64, 42, 5, 21, 0, 0, 0, 63, 42, 5, 21, 26, 81, 99, 65, 42, 5, 21, 51, 51, 51, 63, 42, 5, 21, 0, 0, 128, 191, 42, 5, 21, 0, 0, 128, 191, 42, 5, 21, 182, 243, 13, 63, 42, 5, 21, 205, 204, 76, 62, 18, 60, 8, 101, 42, 0, 42, 5, 21, 27, 158, 118, 64, 42, 5, 21, 0, 0, 0, 63, 42, 5, 21, 37, 117, 192, 65, 42, 5, 21, 154, 153, 153, 63, 42, 5, 21, 205, 59, 22, 66, 42, 5, 21, 51, 51, 243, 63, 42, 5, 21, 141, 151, 174, 62, 42, 5, 21, 205, 204, 76, 62, 18, 60, 8, 104, 42, 0, 42, 5, 21, 50, 119, 183, 64, 42, 5, 21, 154, 153, 153, 62, 42, 5, 21, 239, 201, 5, 65, 42, 5, 21, 205, 204, 204, 62, 42, 5, 21, 42, 105, 2, 66, 42, 5, 21, 205, 204, 204, 63, 42, 5, 21, 86, 125, 174, 62, 42, 5, 21, 205, 204, 76, 62}
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/multi_combquant123.bin"), Body: bytes.NewReader(expBinBytes),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/multi_combquant123.csv"), Body: bytes.NewReader([]byte(`Combined multi-quantification from quant-123, quant-456
PMC, RTT, SCLK, filename, livetime, CaO_%, CaO_err, FeO-T_%, FeO-T_err, SiO2_%, SiO2_err, TiO2_%, TiO2_err
97, 0, 0, Normal_Combined_roi-second, 0, 7.379700183868408, 0.4000000059604645, 39.0806999206543, 2, -1, -1, 0.4284999966621399, 0.20000000298023224
98, 0, 0, Normal_Combined_roi-first, 0, 4.667600154876709, 0.30000001192092896, 13.06719970703125, 0.699999988079071, 29.684799194335938, 1.5, 0.5235000252723694, 0.20000000298023224
100, 0, 0, Normal_Combined_roi-second, 0, 2.9052000045776367, 0.5, 14.207300186157227, 0.699999988079071, -1, -1, 0.5544999837875366, 0.20000000298023224
101, 0, 0, Normal_Combined_shared-roi-third, 0, 3.8533999919891357, 0.5, 24.057199478149414, 1.2000000476837158, 37.55839920043945, 1.899999976158142, 0.3409999907016754, 0.20000000298023224
104, 0, 0, Normal_Combined_roi-first, 0, 5.73330020904541, 0.30000001192092896, 8.361800193786621, 0.4000000059604645, 32.602699279785156, 1.600000023841858, 0.3407999873161316, 0.20000000298023224
`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/summary-multi_combquant123.json"), Body: bytes.NewReader([]byte(`{
"shared": false,
"params": {
"pmcsCount": 0,
"name": "new multi",
"dataBucket": "datasets-bucket",
"datasetPath": "Datasets/dataset-123/dataset.bin",
"datasetID": "dataset-123",
"jobBucket": "job-bucket",
"detectorConfig": "",
"elements": [
"CaO",
"FeO-T",
"SiO2",
"TiO2"
],
"parameters": "",
"runTimeSec": 0,
"coresPerNode": 0,
"startUnixTime": 4234567890,
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"roiID": "",
"elementSetID": "",
"piquantVersion": "N/A",
"quantMode": "CombinedMultiQuant",
"comments": "combined quants",
"roiIDs": [],
"command": "map"
},
"elements": [
"CaO",
"FeO-T",
"SiO2",
"TiO2"
],
"jobId": "multi_combquant123",
"status": "complete",
"message": "combined-multi quantification processed",
"endUnixTime": 4234567890,
"outputFilePath": "UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications",
"piquantLogList": []
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
{},
{},
}
mockS3.AllowGetInAnyOrder = true
idGen := services.MockIDGenerator{
IDs: []string{"combquant123"},
}
svcs := MakeMockSvcs(&mockS3, &idGen, nil, nil)
svcs.TimeStamper = ×tamper.MockTimeNowStamper{
QueuedTimeStamps: []int64{4234567890},
}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/quantification/combine/dataset-123", bytes.NewReader([]byte(`{
"name": "new multi",
"description": "combined quants",
"roiZStack": [
{
"roiID": "roi-first",
"quantificationID": "quant-123"
},
{
"roiID": "roi-second",
"quantificationID": "quant-456"
},
{
"roiID": "shared-roi-third",
"quantificationID": "quant-123"
}
]
}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
printMultiLineBody(resp.Body.String())
Output: dataset <nil> quant1 <nil> quant2 <nil> 200 "multi_combquant123"
Example (QuantHandler_MultiQuantCombine_QuantLoadError) ¶
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// Listing quants for name uniqueness check
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/summary-"),
},
/* {
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String("UserContent/shared/dataset-123/Quantifications/summary-"),
},*/*/
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{
{Key: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/summary-job1.json")},
},
},
/* {
Contents: []*s3.Object{
{Key: aws.String("UserContent/shared/dataset-123/Quantifications/summary-job2.json")},
},
},*/},*/
}
getRequests, getResponses := prepCombineGetCalls("combined-3elem.bin")
getResponses[5] = nil // First quant load fail
mockS3.ExpGetObjectInput = getRequests
mockS3.QueuedGetObjectOutput = getResponses
mockS3.AllowGetInAnyOrder = true
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/quantification/combine/dataset-123", bytes.NewReader([]byte(`{
"name": "new multi",
"description": "combined quants",
"roiZStack": [
{
"roiID": "roi-first",
"quantificationID": "quant-123"
},
{
"roiID": "roi-second",
"quantificationID": "quant-456"
},
{
"roiID": "shared-roi-third",
"quantificationID": "quant-123"
}
]
}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
printMultiLineBody(resp.Body.String())
Output: dataset <nil> quant1 <nil> quant2 <nil> 404 Failed to download quant quant-123: NoSuchKey: Returning error from GetObject
Example (QuantHandler_MultiQuantCombine_ROINotFound) ¶
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// Listing quants for name uniqueness check
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/summary-"),
},
/* {
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String("UserContent/shared/dataset-123/Quantifications/summary-"),
},*/*/
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{
{Key: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/summary-job1.json")},
},
},
/* {
Contents: []*s3.Object{
{Key: aws.String("UserContent/shared/dataset-123/Quantifications/summary-job2.json")},
},
},*/},*/
}
getRequests, getResponses := prepCombineGetCalls("combined-3elem.bin")
mockS3.ExpGetObjectInput = getRequests
mockS3.QueuedGetObjectOutput = getResponses
mockS3.AllowGetInAnyOrder = true
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/quantification/combine/dataset-123", bytes.NewReader([]byte(`{
"name": "new multi",
"description": "combined quants",
"roiZStack": [
{
"roiID": "roi-first",
"quantificationID": "quant-123"
},
{
"roiID": "non-existant-roi",
"quantificationID": "quant-456"
},
{
"roiID": "shared-roi-third",
"quantificationID": "quant-123"
}
]
}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
printMultiLineBody(resp.Body.String())
Output: dataset <nil> quant1 <nil> quant2 <nil> 404 Failed to get all ROIs: Failed to find ROI ID: non-existant-roi
Example (QuantHandler_MultiQuantCombine_SimpleErrors) ¶
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/quantification/combine/dataset-123", bytes.NewReader([]byte(`{
"description": "combined quants",
"roiZStack": [
{
"roiID": "roi-first",
"quantificationID": "quant-123"
}
]
}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("POST", "/quantification/combine/dataset-123", bytes.NewReader([]byte(`{
"name": "here's a name",
"description": "combined quants",
"roiZStack": []
}`)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("POST", "/quantification/combine/dataset-123", bytes.NewReader([]byte(`{
"name": "here's a name",
"description": "combined quants",
"roiZStack": [
{
"roiID": "roi-first",
"quantificationID": "quant-123"
}
]
}`)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 400 Name cannot be empty 400 Must reference more than 1 ROI 400 Must reference more than 1 ROI
Example (QuantHandler_MultiQuantCombine_SummaryOnly_OK) ¶
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// Listing quants for name uniqueness check
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/summary-"),
},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{
{Key: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/summary-job1.json")},
},
},
}
getRequests, getResponses := prepCombineGetCalls("combined-3elem.bin")
mockS3.ExpGetObjectInput = getRequests
mockS3.QueuedGetObjectOutput = getResponses
mockS3.AllowGetInAnyOrder = true
idGen := services.MockIDGenerator{
IDs: []string{"combquant123"},
}
svcs := MakeMockSvcs(&mockS3, &idGen, nil, nil)
svcs.TimeStamper = ×tamper.MockTimeNowStamper{
QueuedTimeStamps: []int64{4234567890},
}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/quantification/combine/dataset-123", bytes.NewReader([]byte(`{
"name": "new multi",
"description": "combined quants",
"roiZStack": [
{
"roiID": "roi-first",
"quantificationID": "quant-123"
},
{
"roiID": "roi-second",
"quantificationID": "quant-456"
},
{
"roiID": "shared-roi-third",
"quantificationID": "quant-123"
}
],
"summaryOnly": true
}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
printMultiLineBody(resp.Body.String())
Output: dataset <nil> quant1 <nil> quant2 <nil> 200 { "detectors": [ "Combined" ], "weightPercents": { "CaO": { "values": [ 0.10906311 ], "roiIDs": [ "roi-first", "roi-second", "shared-roi-third" ], "roiNames": [ "1st ROI", "Second ROI", "Third ROI (shared)" ] }, "FeO-T": { "values": [ 0.43899643 ], "roiIDs": [ "roi-first", "roi-second", "shared-roi-third" ], "roiNames": [ "1st ROI", "Second ROI", "Third ROI (shared)" ] }, "SiO2": { "values": [ 0.44375953 ], "roiIDs": [ "roi-first", "shared-roi-third" ], "roiNames": [ "1st ROI", "Third ROI (shared)" ] }, "TiO2": { "values": [ 0.009725777 ], "roiIDs": [ "roi-first", "roi-second", "shared-roi-third" ], "roiNames": [ "1st ROI", "Second ROI", "Third ROI (shared)" ] } } }
Example (QuantHandler_MultiQuantCombine_UserROILoadError) ¶
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// Listing quants for name uniqueness check
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/summary-"),
},
/* {
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String("UserContent/shared/dataset-123/Quantifications/summary-"),
},*/*/
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{
{Key: aws.String("UserContent/600f2a0806b6c70071d3d174/dataset-123/Quantifications/summary-job1.json")},
},
},
/* {
Contents: []*s3.Object{
{Key: aws.String("UserContent/shared/dataset-123/Quantifications/summary-job2.json")},
},
},*/},*/
}
getRequests, getResponses := prepCombineGetCalls("combined-3elem.bin")
getResponses[3] = nil // User ROI load fail
mockS3.ExpGetObjectInput = getRequests
mockS3.QueuedGetObjectOutput = getResponses
mockS3.AllowGetInAnyOrder = true
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/quantification/combine/dataset-123", bytes.NewReader([]byte(`{
"name": "new multi",
"description": "combined quants",
"roiZStack": [
{
"roiID": "roi-first",
"quantificationID": "quant-123"
},
{
"roiID": "roi-second",
"quantificationID": "quant-456"
},
{
"roiID": "shared-roi-third",
"quantificationID": "quant-123"
}
]
}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
printMultiLineBody(resp.Body.String())
Output: dataset <nil> quant1 <nil> quant2 <nil> 404 Failed to get all ROIs: Failed to find ROI ID: roi-first
Example (QuantHandler_QuantFileNotFound) ¶
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
getRequests, getResponses := prepROICompareGetCalls()
// Blank out the first quant file
getResponses[2] = nil
mockS3.ExpGetObjectInput = getRequests
mockS3.QueuedGetObjectOutput = getResponses
mockS3.AllowGetInAnyOrder = true
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/quantification/comparison-for-roi/dataset-123/roi-567", bytes.NewReader([]byte(`{"quantIDs":["quant-345", "quant-789"]}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: dataset.bin <nil> combined.bin <nil> 404 Failed to download quant quant-345: NoSuchKey: Returning error from GetObject
Example (QuantHandler_QuantSummaryNotFound) ¶
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
getRequests, getResponses := prepROICompareGetCalls()
// Blank out the first quant summary file
getResponses[3] = nil
mockS3.ExpGetObjectInput = getRequests
mockS3.QueuedGetObjectOutput = getResponses
mockS3.AllowGetInAnyOrder = true
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/quantification/comparison-for-roi/dataset-123/roi-567", bytes.NewReader([]byte(`{"quantIDs":["quant-345", "quant-789"]}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: dataset.bin <nil> combined.bin <nil> 404 Failed to download quant summary quant-345: NoSuchKey: Returning error from GetObject
Example (QuantHandler_Stream_404) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/summary.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
mockUser := pixlUser.UserInfo{
Name: "Niko Bellic",
UserID: "600f2a0806b6c70071d3d174",
Permissions: map[string]bool{
"access:groupie": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/quantification/download/590340/job-7", nil) // Should return empty list, datasets.json fails to download
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 590340 not found
Example (QuantHandler_Stream_BadSummary) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/summary.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
{
Body: ioutil.NopCloser(bytes.NewReader([]byte("bad json"))),
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
mockUser := pixlUser.UserInfo{
Name: "Niko Bellic",
UserID: "600f2a0806b6c70071d3d174",
Permissions: map[string]bool{
"access:groupie": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/quantification/download/590340/job-7", nil) // Should return empty list, datasets.json fails to download
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 500 failed to verify dataset group permission
Example (QuantHandler_UploadErrors) ¶
Quantification manual uploads, this has many failure scenarios...
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.TimeStamper = ×tamper.MockTimeNowStamper{
QueuedTimeStamps: []int64{1234567890},
}
apiRouter := MakeRouter(svcs)
// No body
req, _ := http.NewRequest("POST", "/quantification/upload/rtt-456", bytes.NewReader([]byte("")))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// No name line
req, _ = http.NewRequest("POST", "/quantification/upload/rtt-456", bytes.NewReader([]byte(`Comments=Hello world
CSV
Header line
PMC,Ca_%,livetime,RTT,SCLK,filename
1,5.3,9.9,98765,1234567890,Normal_A
`)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// No comment line
req, _ = http.NewRequest("POST", "/quantification/upload/rtt-456", bytes.NewReader([]byte(`Name=Hello world
CSV
Header line
PMC,Ca_%,livetime,RTT,SCLK,filename
1,5.3,9.9,98765,1234567890,Normal_A
`)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// No/bad CSV line
req, _ = http.NewRequest("POST", "/quantification/upload/rtt-456", bytes.NewReader([]byte(`Name=Hello world
Comments=The test
Header line
PMC,Ca_%,livetime,RTT,SCLK,filename
1,5.3,9.9,98765,1234567890,Normal_A
`)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Missing header line
req, _ = http.NewRequest("POST", "/quantification/upload/rtt-456", bytes.NewReader([]byte(`Name=Hello world
Comments=The test
CSV
PMC,Ca_%,livetime,RTT,SCLK,filename
1,5.3,9.9,98765,1234567890,Normal_A
`)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Missing PMC column
req, _ = http.NewRequest("POST", "/quantification/upload/rtt-456", bytes.NewReader([]byte(`Name=Hello world
Comments=The test
CSV
Header line
Ca_%,livetime,RTT,SCLK,filename
5.3,9.9,98765,1234567890,Normal_A
`)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
/*
// PMC not the first column
req, _ = http.NewRequest("POST", "/quantification/upload/rtt-456", bytes.NewReader([]byte(`Name=Hello world
Comments=The test
CSV
Header line
Ca_%,PMC,livetime,RTT,SCLK,filename
5.3,1,9.9,98765,1234567890,Normal_A
`)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
*/sp.Body)
*/
Output:
Example (QuantHandler_UploadOK) ¶
Quantification manual uploads, success scenario
rand.Seed(time.Now().UnixNano())
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// bin, CSV and summary are all uploaded
expBinBytes := []byte{10, 4, 67, 97, 95, 37, 10, 8, 108, 105, 118, 101, 116, 105, 109, 101, 18, 2, 0, 0, 26, 31, 10, 1, 65, 18, 26, 8, 1, 16, 205, 131, 6, 24, 210, 133, 216, 204, 4, 42, 5, 21, 154, 153, 169, 64, 42, 5, 21, 102, 102, 30, 65, 26, 31, 10, 1, 66, 18, 26, 8, 1, 16, 205, 131, 6, 24, 210, 133, 216, 204, 4, 42, 5, 21, 102, 102, 166, 64, 42, 5, 21, 205, 204, 28, 65}
//fmt.Println(string(expBinBytes))
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/upload_quant123.bin"), Body: bytes.NewReader(expBinBytes),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/upload_quant123.csv"), Body: bytes.NewReader([]byte(`Header line
PMC, Ca_%, livetime, RTT, SCLK, filename
1, 5.3, 9.9, 98765, 1234567890, Normal_A
1, 5.2, 9.8, 98765, 1234567890, Normal_B
`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications/summary-upload_quant123.json"), Body: bytes.NewReader([]byte(`{
"shared": false,
"params": {
"pmcsCount": 0,
"name": "Hello world",
"dataBucket": "datasets-bucket",
"datasetPath": "Datasets/rtt-456/dataset.bin",
"datasetID": "rtt-456",
"jobBucket": "job-bucket",
"detectorConfig": "",
"elements": [
"Ca"
],
"parameters": "",
"runTimeSec": 0,
"coresPerNode": 0,
"startUnixTime": 1234567890,
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"roiID": "",
"elementSetID": "",
"piquantVersion": "N/A",
"quantMode": "ABManual",
"comments": "The test",
"roiIDs": [],
"command": "map"
},
"elements": [
"Ca"
],
"jobId": "upload_quant123",
"status": "complete",
"message": "user-supplied quantification processed",
"endUnixTime": 1234567890,
"outputFilePath": "UserContent/600f2a0806b6c70071d3d174/rtt-456/Quantifications",
"piquantLogList": []
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
{},
{},
}
idGen := services.MockIDGenerator{
IDs: []string{"quant123"},
}
svcs := MakeMockSvcs(&mockS3, &idGen, nil, nil)
svcs.TimeStamper = ×tamper.MockTimeNowStamper{
QueuedTimeStamps: []int64{1234567890},
}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/quantification/upload/rtt-456", bytes.NewReader([]byte(`Name=Hello world
Comments=The test
CSV
Header line
PMC, Ca_%, livetime, RTT, SCLK, filename
1, 5.3, 9.9, 98765, 1234567890, Normal_A
1, 5.2, 9.8, 98765, 1234567890, Normal_B
`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 "upload_quant123"
Example (QuantHandler_ZStackLoad) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(zstackS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(zstackS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(zstackS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(zstackS3Path),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte("xSomething invalid"))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(zStackFile))),
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
// File not in S3, should return empty
req, _ := http.NewRequest("GET", "/quantification/combine-list/dataset123", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// File in S3 empty, should return empty
req, _ = http.NewRequest("GET", "/quantification/combine-list/dataset123", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// File contains invalid json, should return error
req, _ = http.NewRequest("GET", "/quantification/combine-list/dataset123", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// File valid, should be OK
req, _ = http.NewRequest("GET", "/quantification/combine-list/dataset123", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 { "roiZStack": [] } 200 { "roiZStack": [] } 500 invalid character 'x' looking for beginning of value 200 { "roiZStack": [ { "roiID": "roi123", "quantificationID": "quantOne" }, { "roiID": "roi456", "quantificationID": "quantTwo" } ] }
Example (QuantHandler_ZStackSave) ¶
Super simple because we overwrite the file each time!
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
const publicDatasetsJSON = `{
"rtt-456": {
"dataset_id": "rtt-456",
"public": false,
"public_release_utc_time_sec": 0,
"sol": ""
}
}`
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/datasetThatDoesntExist/summary.json"),
},
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/datasetNoPermission/summary.json"),
},
{
Bucket: aws.String("config-bucket"), Key: aws.String("PixliseConfig/datasets-auth.json"),
},
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/dataset123/summary.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"dataset_id": "datasetNoPermission",
"group": "GroupA",
"drive_id": 292,
"site_id": 1,
"target_id": "?",
"sol": "0",
"rtt": 456,
"sclk": 0,
"context_image": "MCC-234.png",
"location_count": 446,
"data_file_size": 2699388,
"context_images": 1,
"normal_spectra": 882,
"dwell_spectra": 0,
"bulk_spectra": 2,
"max_spectra": 2,
"pseudo_intensities": 441,
"detector_config": "PIXL"
}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(publicDatasetsJSON))), // 2
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"dataset_id": "dataset123",
"group": "GroupB",
"drive_id": 292,
"site_id": 1,
"target_id": "?",
"sol": "0",
"rtt": 456,
"sclk": 0,
"context_image": "MCC-234.png",
"location_count": 446,
"data_file_size": 2699388,
"context_images": 1,
"normal_spectra": 882,
"dwell_spectra": 0,
"bulk_spectra": 2,
"max_spectra": 2,
"pseudo_intensities": 441,
"detector_config": "PIXL"
}`))),
},
}
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(zstackS3Path), Body: bytes.NewReader([]byte(zStackFile)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
mockUser := pixlUser.UserInfo{
Name: "Niko Bellic",
UserID: "600f2a0806b6c70071d3d174",
Permissions: map[string]bool{
"read:data-analysis": true,
"access:GroupB": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
// Invalid contents, fail
req, _ := http.NewRequest("POST", "/quantification/combine-list/dataset123", bytes.NewReader([]byte("Something invalid")))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Bad dataset ID, fail
req, _ = http.NewRequest("POST", "/quantification/combine-list/datasetThatDoesntExist", bytes.NewReader([]byte(zStackFile)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// No permissions for dataset, fail
req, _ = http.NewRequest("POST", "/quantification/combine-list/datasetNoPermission", bytes.NewReader([]byte(zStackFile)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Valid, success
req, _ = http.NewRequest("POST", "/quantification/combine-list/dataset123", bytes.NewReader([]byte(zStackFile)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 400 Request body invalid 400 datasetThatDoesntExist not found 400 dataset datasetNoPermission not permitted 200
Example (Quant_LastRun_Stream_OK) ¶
const summaryJSON = `{
"dataset_id": "590340",
"group": "groupie",
"drive_id": 292,
"site_id": 1,
"target_id": "?",
"sol": "0",
"rtt": 590340,
"sclk": 0,
"context_image": "MCC-234.png",
"location_count": 446,
"data_file_size": 2699388,
"context_images": 1,
"normal_spectra": 882,
"dwell_spectra": 0,
"bulk_spectra": 2,
"max_spectra": 2,
"pseudo_intensities": 441,
"detector_config": "PIXL"
}`
quantResultBytes := []byte{60, 113, 117, 97, 110, 116, 62}
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/summary.json"),
},
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/summary.json"),
},
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/summary.json"),
},
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/summary.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/600f2a0806b6c70071d3d174/590340/LastPiquantOutput/quant/output_data.csv"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(summaryJSON))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(summaryJSON))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(summaryJSON))),
},
{
ContentLength: aws.Int64(int64(len(quantResultBytes))),
Body: ioutil.NopCloser(bytes.NewReader(quantResultBytes)), // return some printable chars so easier to compare in Output comment
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
mockUser := pixlUser.UserInfo{
Name: "Niko Bellic",
UserID: "600f2a0806b6c70071d3d174",
Permissions: map[string]bool{
"access:groupie": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
// Should fail, datasets.json fails to download
req, _ := http.NewRequest("GET", "/quantification/last/download/590340/quant/output", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
// Make sure the response is the right kind...
fmt.Println(resp.HeaderMap["Content-Disposition"])
fmt.Println(resp.HeaderMap["Cache-Control"])
fmt.Println(resp.HeaderMap["Content-Length"])
fmt.Println(resp.Body)
// Should fail, invalid command
req, _ = http.NewRequest("GET", "/quantification/last/download/590340/rpmcalc/output", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
// Make sure the response is the right kind...
fmt.Println(resp.HeaderMap["Content-Disposition"])
fmt.Println(resp.HeaderMap["Cache-Control"])
fmt.Println(resp.HeaderMap["Content-Length"])
fmt.Println(resp.Body)
// Should fail, invalid file type
req, _ = http.NewRequest("GET", "/quantification/last/download/590340/quant/runcost", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
// Make sure the response is the right kind...
fmt.Println(resp.HeaderMap["Content-Disposition"])
fmt.Println(resp.HeaderMap["Cache-Control"])
fmt.Println(resp.HeaderMap["Content-Length"])
fmt.Println(resp.Body)
// Should succeed
req, _ = http.NewRequest("GET", "/quantification/last/download/590340/quant/output", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
// Make sure the response is the right kind...
fmt.Println(resp.HeaderMap["Content-Disposition"])
fmt.Println(resp.HeaderMap["Cache-Control"])
fmt.Println(resp.HeaderMap["Content-Length"])
fmt.Println(resp.Body)
Output: 404 [] [] [] 590340 not found 400 [] [] [] Invalid request 400 [] [] [] Invalid request 200 [attachment; filename="output_data.csv"] [max-age=604800] [7] <quant>
Example (Quant_Stream_OK) ¶
const summaryJSON = `{
"dataset_id": "590340",
"group": "groupie",
"drive_id": 292,
"site_id": 1,
"target_id": "?",
"sol": "0",
"rtt": 590340,
"sclk": 0,
"context_image": "MCC-234.png",
"location_count": 446,
"data_file_size": 2699388,
"context_images": 1,
"normal_spectra": 882,
"dwell_spectra": 0,
"bulk_spectra": 2,
"max_spectra": 2,
"pseudo_intensities": 441,
"detector_config": "PIXL"
}`
datasetBytes := []byte{60, 113, 117, 97, 110, 116, 62}
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(DatasetsBucketForUnitTest), Key: aws.String("Datasets/590340/summary.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/600f2a0806b6c70071d3d174/590340/Quantifications/job-7.bin"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(summaryJSON))),
},
{
ContentLength: aws.Int64(int64(len(datasetBytes))),
Body: ioutil.NopCloser(bytes.NewReader(datasetBytes)), // return some printable chars so easier to compare in Output comment
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
mockUser := pixlUser.UserInfo{
Name: "Niko Bellic",
UserID: "600f2a0806b6c70071d3d174",
Permissions: map[string]bool{
"access:groupie": true,
"read:data-analysis": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/quantification/download/590340/job-7", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
// Make sure the response is the right kind...
fmt.Println(resp.HeaderMap["Content-Disposition"])
fmt.Println(resp.HeaderMap["Cache-Control"])
fmt.Println(resp.HeaderMap["Content-Length"])
fmt.Println(resp.Body)
Output: 200 [attachment; filename="job-7.bin"] [max-age=604800] [7] <quant>
Example (RegisterExportHandlerBadJSONBody) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
var exp MockExporter
exp.downloadReturn = []byte{80, 101, 116, 101, 114, 32, 105, 115, 32, 97, 119, 101, 115, 111, 109, 101}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Exporter = &exp
mockUser := pixlUser.UserInfo{
Name: "Niko Bellic",
UserID: "600f2a0806b6c70071d3d174",
Email: "niko@rockstar.com",
Permissions: map[string]bool{
"export:map": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/export/files/983561", bytes.NewReader([]byte(`{
"quantificati,`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Print(string(resp.Body.Bytes()))
Output: 400 unexpected end of JSON input
Example (RegisterExportHandlerMissingColumn) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
var exp MockExporter
exp.downloadReturn = []byte{80, 101, 116, 101, 114, 32, 105, 115, 32, 97, 119, 101, 115, 111, 109, 101}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Exporter = &exp
mockUser := pixlUser.UserInfo{
Name: "Niko Bellic",
UserID: "600f2a0806b6c70071d3d174",
Email: "niko@rockstar.com",
Permissions: map[string]bool{
"export:map": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/export/files/983561", bytes.NewReader([]byte(`{
"fileName": "test.zip",
"quantificationId": "abc123"
}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Print(string(resp.Body.Bytes()))
Output: 400 No File IDs specified, nothing to export
Example (RegisterExportHandlerMissingFileName) ¶
Same result as if the POST body is completely empty
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
var exp MockExporter
exp.downloadReturn = []byte{80, 101, 116, 101, 114, 32, 105, 115, 32, 97, 119, 101, 115, 111, 109, 101}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Exporter = &exp
mockUser := pixlUser.UserInfo{
Name: "Niko Bellic",
UserID: "600f2a0806b6c70071d3d174",
Email: "niko@rockstar.com",
Permissions: map[string]bool{
"export:map": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/export/files/983561", bytes.NewReader([]byte(`{
"fileIds": ["quant-maps-csv", "rois"]
}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Print(string(resp.Body.Bytes()))
Output: 400 File name must end in .zip
Example (RegisterExportHandlerSunny) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
var exp MockExporter
exp.downloadReturn = []byte{80, 101, 116, 101, 114, 32, 105, 115, 32, 97, 119, 101, 115, 111, 109, 101}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.Exporter = &exp
mockUser := pixlUser.UserInfo{
Name: "Niko Bellic",
UserID: "600f2a0806b6c70071d3d174",
Email: "niko@rockstar.com",
Permissions: map[string]bool{
"export:map": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("POST", "/export/files/983561", bytes.NewReader([]byte(`{
"fileName": "test.zip",
"quantificationId": "abc123",
"fileIds": ["quant-maps-csv", "rois"]
}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(exp.datasetID)
fmt.Println(exp.userID)
fmt.Println(exp.quantID)
fmt.Println(exp.fileIDs)
fmt.Println(resp.Header().Get("Content-Type"))
fmt.Println(resp.Header().Get("Content-Length"))
fmt.Println(string(resp.Body.Bytes()))
Output: 200 983561 600f2a0806b6c70071d3d174 abc123 [quant-maps-csv rois] application/octet-stream 16 Peter is awesome
Example (RegisterMetricsHandlerTest) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest),
Key: aws.String("Activity/2023-03-16/metric-button-600f2a0806b6c70071d3d174-1678938381.json"),
Body: bytes.NewReader([]byte(`{"name": "something", "counter": 3, "comment": "lala"}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.TimeStamper = ×tamper.MockTimeNowStamper{
QueuedTimeStamps: []int64{1678938381},
}
apiRouter := MakeRouter(svcs)
postItem := `{"name": "something", "counter": 3, "comment": "lala"}`
// POST without ID should fail
req, _ := http.NewRequest("POST", "/metrics", bytes.NewReader([]byte(postItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(string(resp.Body.Bytes()))
req, _ = http.NewRequest("POST", "/metrics/button", bytes.NewReader([]byte(postItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(string(resp.Body.Bytes()))
Output: 404 404 page not found 200
Example (RoiHandler_Delete) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiSharedS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"331": {
"name": "Dark patch 2",
"description": "The second dark patch",
"locationIndexes": [
4,
55,
394
],
"creator": { "name": "Peter", "user_id": "600f2a0806b6c70071d3d174" },
"create_unix_time_sec": 1668100000,
"mod_unix_time_sec": 1668100000,
"mistROIItem": {
"species": "",
"mineralGroupID": "",
"ID_Depth": 0,
"ClassificationTrail": "",
"formula": ""
},
"tags": []
},
"772": {
"name": "White spot",
"locationIndexes": [
14,
5,
94
],
"creator": { "name": "Tom", "user_id": "u124" },
"create_unix_time_sec": 1668100001,
"mod_unix_time_sec": 1668100001,
"mistROIItem": {
"species": "",
"mineralGroupID": "",
"ID_Depth": 0,
"ClassificationTrail": "",
"formula": ""
},
"tags": []
}
}`))),
},
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(roi2XItems))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(roi2XItems))),
},
}
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiSharedS3Path), Body: bytes.NewReader([]byte(`{
"772": {
"name": "White spot",
"locationIndexes": [
14,
5,
94
],
"description": "",
"mistROIItem": {
"species": "",
"mineralGroupID": "",
"ID_Depth": 0,
"ClassificationTrail": "",
"formula": ""
},
"tags": [],
"shared": false,
"creator": {
"name": "Tom",
"user_id": "u124",
"email": ""
},
"create_unix_time_sec": 1668100001,
"mod_unix_time_sec": 1668100001
}
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
// Delete shared item, OK
req, _ := http.NewRequest("DELETE", "/roi/TheDataSetID/shared-331", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Delete finds file missing, ERROR
req, _ = http.NewRequest("DELETE", "/roi/TheDataSetID/331", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Delete finds empty file, ERROR
req, _ = http.NewRequest("DELETE", "/roi/TheDataSetID/331", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Delete cant find item, ERROR
req, _ = http.NewRequest("DELETE", "/roi/TheDataSetID/22", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Delete finds item, OK
req, _ = http.NewRequest("DELETE", "/roi/TheDataSetID/331", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 404 331 not found 404 331 not found 404 22 not found 401 331 not owned by 600f2a0806b6c70071d3d174
Example (RoiHandler_Post) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(roi2XItems))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"id999": {
"name": "White spot",
"locationIndexes": [
3,
9
],
"description": "",
"mistROIItem": {
"species": "",
"mineralGroupID": "",
"ID_Depth": 0,
"ClassificationTrail": "",
"formula": ""
},
"tags": [],
"shared": false,
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668100007,
"mod_unix_time_sec": 1668100007
}
}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{}`))),
},
}
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path), Body: bytes.NewReader([]byte(`{
"id3": {
"name": "White spot",
"locationIndexes": [
3,
9,
199
],
"description": "Posted item!",
"mistROIItem": {
"species": "",
"mineralGroupID": "",
"ID_Depth": 0,
"ClassificationTrail": "",
"formula": ""
},
"tags": [],
"shared": false,
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668142579,
"mod_unix_time_sec": 1668142579
}
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path), Body: bytes.NewReader([]byte(`{
"id4": {
"name": "White spot",
"locationIndexes": [
3,
9,
199
],
"description": "Posted item!",
"mistROIItem": {
"species": "",
"mineralGroupID": "",
"ID_Depth": 0,
"ClassificationTrail": "",
"formula": ""
},
"tags": [],
"shared": false,
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668142580,
"mod_unix_time_sec": 1668142580
}
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path), Body: bytes.NewReader([]byte(`{
"331": {
"name": "Dark patch 2",
"locationIndexes": [
4,
55,
394
],
"description": "The second dark patch",
"mistROIItem": {
"species": "",
"mineralGroupID": "",
"ID_Depth": 0,
"ClassificationTrail": "",
"formula": ""
},
"tags": [],
"shared": false,
"creator": {
"name": "Peter",
"user_id": "u123",
"email": ""
},
"create_unix_time_sec": 1668100000,
"mod_unix_time_sec": 1668100000
},
"772": {
"name": "White spot",
"locationIndexes": [
14,
5,
94
],
"description": "",
"mistROIItem": {
"species": "",
"mineralGroupID": "",
"ID_Depth": 0,
"ClassificationTrail": "",
"formula": ""
},
"tags": [],
"shared": false,
"creator": {
"name": "Tom",
"user_id": "u124",
"email": ""
},
"create_unix_time_sec": 1668100001,
"mod_unix_time_sec": 1668100001
},
"id5": {
"name": "White spot",
"locationIndexes": [
3,
9,
199
],
"description": "Posted item!",
"mistROIItem": {
"species": "",
"mineralGroupID": "",
"ID_Depth": 0,
"ClassificationTrail": "",
"formula": ""
},
"tags": [],
"shared": false,
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668142581,
"mod_unix_time_sec": 1668142581
}
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path), Body: bytes.NewReader([]byte(`{
"id6": {
"name": "White spot",
"locationIndexes": [
3,
9,
199
],
"description": "Posted item!",
"imageName": "the_img.png",
"mistROIItem": {
"species": "",
"mineralGroupID": "",
"ID_Depth": 0,
"ClassificationTrail": "",
"formula": ""
},
"tags": [],
"shared": false,
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668142583,
"mod_unix_time_sec": 1668142583
}
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
{},
{},
{},
}
idGen := services.MockIDGenerator{
IDs: []string{"id3", "id4", "id5", "id6"},
}
svcs := MakeMockSvcs(&mockS3, &idGen, nil, nil)
svcs.TimeStamper = ×tamper.MockTimeNowStamper{
QueuedTimeStamps: []int64{1668142579, 1668142580, 1668142581, 1668142582, 1668142583},
}
apiRouter := MakeRouter(svcs)
const postItem = `{
"name": "White spot",
"locationIndexes": [ 3, 9, 199 ],
"description": "Posted item!"
}`
const postItemWithImageName = `{
"name": "White spot",
"imageName": "the_img.png",
"locationIndexes": [ 3, 9, 199 ],
"description": "Posted item!"
}`
const routePath = "/roi/TheDataSetID"
// File not in S3, should work
req, _ := http.NewRequest("POST", routePath, bytes.NewReader([]byte(postItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// File empty in S3, should work
req, _ = http.NewRequest("POST", routePath, bytes.NewReader([]byte(postItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// File already has an ROI by this name by another user, should work
req, _ = http.NewRequest("POST", routePath, bytes.NewReader([]byte(postItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// File already has an ROI by this name by same user, should FAIL
req, _ = http.NewRequest("POST", routePath, bytes.NewReader([]byte(postItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// With imageName field, should work
req, _ = http.NewRequest("POST", routePath, bytes.NewReader([]byte(postItemWithImageName)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 200 200 400 ROI name already used: White spot 200
Example (RoiHandler_Put) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(roi2XItems))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(roi2XItems))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(roi2XItems))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(roi2XItems))),
},
}
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(roiS3Path), Body: bytes.NewReader([]byte(`{
"331": {
"name": "White spot",
"locationIndexes": [
3,
9,
199
],
"description": "Updated item!",
"mistROIItem": {
"species": "",
"mineralGroupID": "",
"ID_Depth": 0,
"ClassificationTrail": "",
"formula": ""
},
"tags": [],
"shared": false,
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668100000,
"mod_unix_time_sec": 1668142579
},
"772": {
"name": "White spot",
"locationIndexes": [
14,
5,
94
],
"description": "",
"mistROIItem": {
"species": "",
"mineralGroupID": "",
"ID_Depth": 0,
"ClassificationTrail": "",
"formula": ""
},
"tags": [],
"shared": false,
"creator": {
"name": "Tom",
"user_id": "u124",
"email": ""
},
"create_unix_time_sec": 1668100001,
"mod_unix_time_sec": 1668100001
}
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.TimeStamper = ×tamper.MockTimeNowStamper{
QueuedTimeStamps: []int64{1668142579},
}
apiRouter := MakeRouter(svcs)
const putItem = `{
"name": "White spot",
"locationIndexes": [ 3, 9, 199 ],
"description": "Updated item!"
}`
// Put finds file missing, ERROR
req, _ := http.NewRequest("PUT", "/roi/TheDataSetID/331", bytes.NewReader([]byte(putItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Put finds empty file, ERROR
req, _ = http.NewRequest("PUT", "/roi/TheDataSetID/331", bytes.NewReader([]byte(putItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Put cant find item, ERROR
req, _ = http.NewRequest("PUT", "/roi/TheDataSetID/22", bytes.NewReader([]byte(putItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Put with bad name, ERROR
req, _ = http.NewRequest("PUT", "/roi/TheDataSetID/22", bytes.NewReader([]byte(`{
"name": "",
"locationIndexes": [ 3, 9, 199 ],
"description": "Updated item!"
}`)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Put shared item, ERROR
req, _ = http.NewRequest("PUT", "/roi/TheDataSetID/shared-331", bytes.NewReader([]byte(putItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Put finds item, OK
req, _ = http.NewRequest("PUT", "/roi/TheDataSetID/331", bytes.NewReader([]byte(putItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 roi 331 not found 404 roi 331 not found 404 roi 22 not found 400 invalid roi name: "" 400 cannot edit shared rois 200
Example (SpectrumAnnotationHandler_Delete) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationSharedS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationSharedS3Path),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(annotations2x))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(annotations2x))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(annotations2x))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"25": {
"eV": 12345,
"name": "Weird part of spectrum",
"roiID": "roi123",
"shared": false,
"creator": {
"name": "The user who shared",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
}
}
}`))),
},
}
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationS3Path), Body: bytes.NewReader([]byte(`{
"8": {
"name": "Left of spectrum",
"roiID": "roi123",
"eV": 555,
"shared": false,
"creator": {
"name": "Peter",
"user_id": "u123",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668100001,
"mod_unix_time_sec": 1668100001
}
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationSharedS3Path), Body: bytes.NewReader([]byte(`{}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
const routePath = "/annotation/rtt-123/3"
// Delete finds file missing, ERROR
req, _ := http.NewRequest("DELETE", routePath, nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Delete finds empty file, ERROR
req, _ = http.NewRequest("DELETE", routePath, nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Delete cant find item, ERROR
req, _ = http.NewRequest("DELETE", routePath, nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Delete finds item, OK
req, _ = http.NewRequest("DELETE", "/annotation/rtt-123/5", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Delete shared item but from wrong user, ERROR
req, _ = http.NewRequest("DELETE", "/annotation/rtt-123/shared-5", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Delete shared item, OK
req, _ = http.NewRequest("DELETE", "/annotation/rtt-123/shared-25", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 3 not found 404 3 not found 404 3 not found 200 401 5 not owned by 600f2a0806b6c70071d3d174 200
Example (SpectrumAnnotationHandler_Post) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationS3Path),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(annotations2x))),
},
}
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationS3Path), Body: bytes.NewReader([]byte(`{
"id1": {
"name": "The modified flag",
"roiID": "roi222",
"eV": 9999,
"shared": false,
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668142579,
"mod_unix_time_sec": 1668142579
}
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationS3Path), Body: bytes.NewReader([]byte(`{
"id2": {
"name": "The modified flag",
"roiID": "roi222",
"eV": 9999,
"shared": false,
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668142580,
"mod_unix_time_sec": 1668142580
}
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationS3Path), Body: bytes.NewReader([]byte(`{
"5": {
"name": "Weird part of spectrum",
"roiID": "roi123",
"eV": 12345,
"shared": false,
"creator": {
"name": "Tom",
"user_id": "u124",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668100000,
"mod_unix_time_sec": 1668100000
},
"8": {
"name": "Left of spectrum",
"roiID": "roi123",
"eV": 555,
"shared": false,
"creator": {
"name": "Peter",
"user_id": "u123",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668100001,
"mod_unix_time_sec": 1668100001
},
"id3": {
"name": "The modified flag",
"roiID": "roi222",
"eV": 9999,
"shared": false,
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668142581,
"mod_unix_time_sec": 1668142581
}
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
{},
{},
}
idGen := services.MockIDGenerator{
IDs: []string{"id1", "id2", "id3"},
}
svcs := MakeMockSvcs(&mockS3, &idGen, nil, nil)
svcs.TimeStamper = ×tamper.MockTimeNowStamper{
QueuedTimeStamps: []int64{1668142579, 1668142580, 1668142581},
}
apiRouter := MakeRouter(svcs)
body := `{
"name": "The modified flag",
"roiID": "roi222",
"eV": 9999
}`
req, _ := http.NewRequest("POST", "/annotation/rtt-123", bytes.NewReader([]byte(body)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("POST", "/annotation/rtt-123", bytes.NewReader([]byte(body)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("POST", "/annotation/rtt-123", bytes.NewReader([]byte(body)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 { "id1": { "name": "The modified flag", "roiID": "roi222", "eV": 9999, "shared": false, "creator": { "name": "Niko Bellic", "user_id": "600f2a0806b6c70071d3d174", "email": "niko@spicule.co.uk" }, "create_unix_time_sec": 1668142579, "mod_unix_time_sec": 1668142579 } } 200 { "id2": { "name": "The modified flag", "roiID": "roi222", "eV": 9999, "shared": false, "creator": { "name": "Niko Bellic", "user_id": "600f2a0806b6c70071d3d174", "email": "niko@spicule.co.uk" }, "create_unix_time_sec": 1668142580, "mod_unix_time_sec": 1668142580 } } 200 { "5": { "name": "Weird part of spectrum", "roiID": "roi123", "eV": 12345, "shared": false, "creator": { "name": "Tom", "user_id": "u124", "email": "niko@spicule.co.uk" }, "create_unix_time_sec": 1668100000, "mod_unix_time_sec": 1668100000 }, "8": { "name": "Left of spectrum", "roiID": "roi123", "eV": 555, "shared": false, "creator": { "name": "Peter", "user_id": "u123", "email": "niko@spicule.co.uk" }, "create_unix_time_sec": 1668100001, "mod_unix_time_sec": 1668100001 }, "id3": { "name": "The modified flag", "roiID": "roi222", "eV": 9999, "shared": false, "creator": { "name": "Niko Bellic", "user_id": "600f2a0806b6c70071d3d174", "email": "niko@spicule.co.uk" }, "create_unix_time_sec": 1668142581, "mod_unix_time_sec": 1668142581 } }
Example (SpectrumAnnotationHandler_Put) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationS3Path),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(annotations2x))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(annotations2x))),
},
}
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(annotationS3Path), Body: bytes.NewReader([]byte(`{
"5": {
"name": "Updated Item",
"roiID": "roi444",
"eV": 8888,
"shared": false,
"creator": {
"name": "Tom",
"user_id": "u124",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668100000,
"mod_unix_time_sec": 1668142579
},
"8": {
"name": "Left of spectrum",
"roiID": "roi123",
"eV": 555,
"shared": false,
"creator": {
"name": "Peter",
"user_id": "u123",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668100001,
"mod_unix_time_sec": 1668100001
}
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.TimeStamper = ×tamper.MockTimeNowStamper{
QueuedTimeStamps: []int64{1668142579},
}
apiRouter := MakeRouter(svcs)
const putItem = `{
"name": "Updated Item",
"roiID": "roi444",
"eV": 8888
}`
const routePath = "/annotation/rtt-123/3"
// File not in S3, should work
req, _ := http.NewRequest("PUT", routePath, bytes.NewReader([]byte(putItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// File empty in S3, should work
req, _ = http.NewRequest("PUT", routePath, bytes.NewReader([]byte(putItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// ROI annotations for this exist, but we're adding a new annotation
req, _ = http.NewRequest("PUT", routePath, bytes.NewReader([]byte(putItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// ROI annotations for this exist, but we're editing an existing annotation
req, _ = http.NewRequest("PUT", "/annotation/rtt-123/5", bytes.NewReader([]byte(putItem)))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 3 not found 404 3 not found 404 3 not found 200 { "5": { "name": "Updated Item", "roiID": "roi444", "eV": 8888, "shared": false, "creator": { "name": "Tom", "user_id": "u124", "email": "niko@spicule.co.uk" }, "create_unix_time_sec": 1668100000, "mod_unix_time_sec": 1668142579 }, "8": { "name": "Left of spectrum", "roiID": "roi123", "eV": 555, "shared": false, "creator": { "name": "Peter", "user_id": "u123", "email": "niko@spicule.co.uk" }, "create_unix_time_sec": 1668100001, "mod_unix_time_sec": 1668100001 } }
Example (TagHandler_Delete) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(tagsUserS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(tagsUserS3Path),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(standardizeJSON(`{
"test-new-id": {
"id": "test-new-id",
"name": "testing_post_item",
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"dateCreated": 1670623334,
"type": "expression",
"datasetID": "123456"
},
"some-other-id": {
"id": "some-other-id",
"name": "some_tag",
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"dateCreated": 1670623334,
"type": "expression",
"datasetID": "123456"
}
}`)))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(standardizeJSON(`{
"test-other-creator-id": {
"id": "test-other-creator-id",
"name": "testing_post_item",
"creator": {
"name": "Some Other User",
"user_id": "1234567",
"email": "email@email.com"
},
"dateCreated": 1670623334,
"type": "expression",
"datasetID": "123456"
}
}`)))),
},
}
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(tagsUserS3Path), Body: bytes.NewReader([]byte(standardizeJSON(`{
"some-other-id": {
"id": "some-other-id",
"name": "some_tag",
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"dateCreated": 1670623334,
"type": "expression",
"datasetID": "123456"
}
}`))),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
// Tries to delete a tag the user owns and only deletes that tag from the tag list
req, _ := http.NewRequest("DELETE", "/tags/123456/test-new-id", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Tries to delete a tag the user doesn't own, should fail
req, _ = http.NewRequest("DELETE", "/tags/123456/test-other-creator-id", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 401 test-other-creator-id not owned by 600f2a0806b6c70071d3d174
Example (TagHandler_List) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(tagsUserS3Path),
},
}
// By minifying response, don't have to worry about whitespace or tab differences
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(minifyJSON(`
{
"test-id": {
"id": "test-id",
"name": "new_tag_test",
"creator": {
"name": "Ryan Stonebraker",
"user_id": "6227d96292150a0069117483",
"email": "ryan.a.stonebraker@jpl.nasa.gov"
},
"dateCreated": 1670623334,
"type": "expression",
"datasetID": "123456"
}
}`)))),
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
// User requests list of all tags
req, _ := http.NewRequest("GET", "/tags/123456", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(minifyJSON(resp.Body.String()))
Output: 200 {"test-id":{"id":"test-id","name":"new_tag_test","creator":{"name":"Ryan Stonebraker","user_id":"6227d96292150a0069117483","email":"ryan.a.stonebraker@jpl.nasa.gov"},"dateCreated":1670623334,"type":"expression","datasetID":"123456"}}
Example (TagHandler_Post) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(tagsUserS3Path),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{}`))),
},
}
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(tagsUserS3Path), Body: bytes.NewReader([]byte(standardizeJSON(`{
"test-new-id": {
"id": "test-new-id",
"name": "testing_post_item",
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"dateCreated": 1670623334,
"type": "expression",
"datasetID": "123456"
}
}`))),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
idGen := services.MockIDGenerator{
IDs: []string{"test-new-id"},
}
svcs := MakeMockSvcs(&mockS3, &idGen, nil, nil)
svcs.TimeStamper = ×tamper.MockTimeNowStamper{
QueuedTimeStamps: []int64{1670623334},
}
apiRouter := MakeRouter(svcs)
postItem := minifyJSON(`{
"id": "test-new-id",
"name": "testing_post_item",
"dateCreated": 1670623334,
"type": "expression",
"datasetID": "123456"
}`)
// Posts a new tag
req, _ := http.NewRequest("POST", "/tags/123456", bytes.NewReader([]byte(postItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 { "id": "test-new-id" }
Example (UserManagement_AddDeleteRole) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
setTestAuth0Config(&svcs)
apiRouter := MakeRouter(svcs)
// To test add/delete of roles:
// In case test ran before, we call delete first, then list roles, ensuring it's not in there.
req, _ := http.NewRequest("DELETE", "/user/roles/"+knownTestUserID+"/"+knownTestRoleID, nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Printf("ensure-del: %v\n", resp.Code)
fmt.Println(resp.Body)
// Stop for a sec so we don't hit auth0 API rate limit
time.Sleep(1 * time.Second)
req, _ = http.NewRequest("GET", "/user/roles/"+knownTestUserID, nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Printf("check-del: %v\n", resp.Code)
fmt.Println(resp.Body)
// We then add the role, list roles, ensure it's there
req, _ = http.NewRequest("POST", "/user/roles/"+knownTestUserID+"/"+knownTestRoleID, nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Printf("add: %v\n", resp.Code)
fmt.Println(resp.Body)
// Stop for a sec so we don't hit auth0 API rate limit
time.Sleep(1 * time.Second)
req, _ = http.NewRequest("GET", "/user/roles/"+knownTestUserID, nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Printf("ensure-added: %v\n", resp.Code)
fmt.Println(resp.Body)
// Finally, delete role, list roles, ensure it's gone
req, _ = http.NewRequest("DELETE", "/user/roles/"+knownTestUserID+"/"+knownTestRoleID, nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Printf("delete: %v\n", resp.Code)
fmt.Println(resp.Body)
// Stop for a sec so we don't hit auth0 API rate limit
time.Sleep(1 * time.Second)
req, _ = http.NewRequest("GET", "/user/roles/"+knownTestUserID, nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Printf("ensure-del-2: %v\n", resp.Code)
fmt.Println(resp.Body)
req, _ = http.NewRequest("POST", "/user/roles/"+knownTestUserID+"/"+knownTestRoleID, nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Printf("add-back: %v\n", resp.Code)
fmt.Println(resp.Body)
// Stop for a sec so we don't hit auth0 API rate limit
time.Sleep(1 * time.Second)
Output: ensure-del: 200 check-del: 200 null add: 200 ensure-added: 200 [ { "id": "rol_KdjHrTCteclbY7om", "name": "No Permissions", "description": "When a user has signed up and we don't know who they are, we assign this." } ] delete: 200 ensure-del-2: 200 null add-back: 200
Example (User_edit_field_error) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
setTestAuth0Config(&svcs)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("PUT", "/user/field/flux", bytes.NewReader([]byte("Something")))
resp := executeRequest(req, apiRouter.Router)
fmt.Printf("status: %v\n", resp.Code)
fmt.Println(resp.Body)
Output: status: 500 Unrecognised field: flux
Example (Version) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(ConfigBucketForUnitTest), Key: aws.String("PixliseConfig/piquant-version.json"),
},
{
Bucket: aws.String(ConfigBucketForUnitTest), Key: aws.String("PixliseConfig/piquant-version.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"version": "registry.github.com/pixlise/piquant/runner:3.2.8",
"changedUnixTimeSec": 1630635994,
"creator": {
"name": "Niko Belic",
"user_id": "12345",
"email": "nikobellic@gmail.com"
}
}`))),
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(strings.HasPrefix(string(resp.Body.Bytes()), "<!DOCTYPE html>"))
versionPat := regexp.MustCompile(`<h1>PIXLISE API</h1><p>Version .+</p>`)
fmt.Println(versionPat.MatchString(string(resp.Body.Bytes())))
req, _ = http.NewRequest("GET", "/version", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Printf("%v\n", resp.Body.String())
req, _ = http.NewRequest("GET", "/version", nil)
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
if resp.Code != 200 {
fmt.Printf("%v\n", resp.Body.String())
}
var ver ComponentVersionsGetResponse
err := json.Unmarshal(resp.Body.Bytes(), &ver)
fmt.Printf("%v\n", err)
if err == nil {
// Print out how many version structs and if we find an "API" one
foundAPI := false
foundPIQUANT := false
for _, v := range ver.Components {
if v.Component == "API" {
foundAPI = true
}
if v.Component == "PIQUANT" {
foundPIQUANT = true
// Check it's what we expected
fmt.Printf("PIQUANT version: %v\n", v.Version)
}
}
vc := "not enough"
if len(ver.Components) > 1 {
vc = "ok"
}
fmt.Printf("Version count: %v, API found: %v, PIQUANT found: %v\n", vc, foundAPI, foundPIQUANT)
}
Output: 200 true true 500 PIQUANT version not set 200 <nil> PIQUANT version: runner:3.2.8 Version count: ok, API found: true, PIQUANT found: true
Example (ViewStateHandler_Delete) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
// DELETE not implemented! Should return 405
req, _ := http.NewRequest("DELETE", "/view-state/TheDataSetID/widget", bytes.NewReader([]byte("")))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 405
Example (ViewStateHandler_DeleteCollection) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "WorkspaceCollections/viewstate123.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "WorkspaceCollections/viewstate555.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{"viewStateIDs": ["view one", "view state 2", "num 3 view"], "name": "viewState555"}`))),
},
}
mockS3.ExpDeleteObjectInput = []s3.DeleteObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "WorkspaceCollections/viewstate555.json"),
},
}
mockS3.QueuedDeleteObjectOutput = []*s3.DeleteObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
// Doesn't exist, should fail
req, _ := http.NewRequest("DELETE", "/view-state/collections/TheDataSetID/viewstate123", bytes.NewReader([]byte("")))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Exists, success
req, _ = http.NewRequest("DELETE", "/view-state/collections/TheDataSetID/viewstate555", bytes.NewReader([]byte("")))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 View state collection not found 200
Example (ViewStateHandler_DeleteSaved) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
collectionRoot := "UserContent/600f2a0806b6c70071d3d174/TheDataSetID/ViewState/WorkspaceCollections"
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
// Test 1
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "Workspaces/viewstate123.json"),
},
// Test 2: no collections
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "Workspaces/viewstate555.json"),
},
// Test 3: not in collections
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "Workspaces/viewstate555.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(collectionRoot + "/a collection.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(collectionRoot + "/Another-Collection.json"),
},
// Test 4: found in collection
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "Workspaces/viewstate555.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(collectionRoot + "/culprit.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
// Test 1: no view state file
nil,
// Test 2: exists
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{"name": "viewstate555", "viewState": {"selection": {}}}`))),
},
// Test 3: exists + collections returned
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{"name": "viewstate555", "viewState": {"selection": {}}}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{"name": "a collection", "viewStateIDs": ["some view state", "another"]}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{"name": "Another-Collection", "viewStateIDs": ["also not the one"]}`))),
},
// Test 4: exists + collections returned, one contains this view state!
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{"name": "viewstate555", "viewState": {"selection": {}}}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{"name": "culprit", "viewStateIDs": ["some view state", "viewstate555", "another"]}`))),
},
}
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String(collectionRoot),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String(collectionRoot),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String(collectionRoot),
},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
// Test 2: no collections
{
Contents: []*s3.Object{},
},
{
Contents: []*s3.Object{
{Key: aws.String(collectionRoot + "/a collection.json"), LastModified: aws.Time(time.Unix(1634731920, 0))},
{Key: aws.String(collectionRoot + "/Another-Collection.json"), LastModified: aws.Time(time.Unix(1634731921, 0))},
},
},
{
Contents: []*s3.Object{
{Key: aws.String(collectionRoot + "/culprit.json"), LastModified: aws.Time(time.Unix(1634731922, 0))},
{Key: aws.String(collectionRoot + "/Another-Collection.json"), LastModified: aws.Time(time.Unix(1634731923, 0))},
},
},
}
mockS3.ExpDeleteObjectInput = []s3.DeleteObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "Workspaces/viewstate555.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "Workspaces/viewstate555.json"),
},
}
mockS3.QueuedDeleteObjectOutput = []*s3.DeleteObjectOutput{
{},
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
// Doesn't exist, should fail
req, _ := http.NewRequest("DELETE", "/view-state/saved/TheDataSetID/viewstate123", bytes.NewReader([]byte("")))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Exists, no collections, success
req, _ = http.NewRequest("DELETE", "/view-state/saved/TheDataSetID/viewstate555", bytes.NewReader([]byte("")))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Exists, collections checked (not in there), success
req, _ = http.NewRequest("DELETE", "/view-state/saved/TheDataSetID/viewstate555", bytes.NewReader([]byte("")))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Exists but is in a collection, fail
req, _ = http.NewRequest("DELETE", "/view-state/saved/TheDataSetID/viewstate555", bytes.NewReader([]byte("")))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 404 viewstate123 not found 200 200 409 Workspace "viewstate555" is in collection "culprit". Please delete the workspace from all collections before before trying to delete it.
Example (ViewStateHandler_Get) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("GET", "/view-state/TheDataSetID/widget", bytes.NewReader([]byte("")))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 405
Example (ViewStateHandler_GetSaved_ROIQuantFallbackCheck) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "Workspaces/viewstate123.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "Workspaces/viewstate555.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil,
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"viewState": {
"analysisLayout": {
"bottomWidgetSelectors": []
},
"rois": {
"roiColours": {
"roi22": "rgba(128,0,255,0.5)",
"roi99": "rgba(255,255,0,1)"
},
"roiShapes": {}
},
"quantification": {
"appliedQuantID": "",
"quantificationByROI": {
"roi22": "quant222",
"roi88": "quant333"
}
},
"selection": {
"roiID": "roi12345",
"roiName": "The best region",
"locIdxs": [
3,
5,
7
]
},
"name": "",
"description": ""
}
}`))),
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
mockUser := pixlUser.UserInfo{
Name: "Niko Bellic",
UserID: "600f2a0806b6c70071d3d174",
Permissions: map[string]bool{
"read:pixlise-settings": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
// Doesn't exist, should fail
req, _ := http.NewRequest("GET", "/view-state/saved/TheDataSetID/viewstate123", bytes.NewReader([]byte("")))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// Exists, success
req, _ = http.NewRequest("GET", "/view-state/saved/TheDataSetID/viewstate555", bytes.NewReader([]byte("")))
resp = executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
// TODO: fix this, sometimes this can result in last quant being quant333, likely due to some map reading ordering issue
Output: 404 viewstate123 not found 200 { "viewState": { "analysisLayout": { "topWidgetSelectors": [], "bottomWidgetSelectors": [] }, "spectrum": { "panX": 0, "panY": 0, "zoomX": 1, "zoomY": 1, "spectrumLines": [], "logScale": true, "xrflines": [], "showXAsEnergy": false, "energyCalibration": [] }, "contextImages": {}, "histograms": {}, "chordDiagrams": {}, "ternaryPlots": {}, "binaryPlots": {}, "tables": {}, "roiQuantTables": {}, "variograms": {}, "spectrums": {}, "rgbuPlots": {}, "singleAxisRGBU": {}, "rgbuImages": {}, "parallelograms": {}, "annotations": { "savedAnnotations": [] }, "rois": { "roiColours": { "roi22": "rgba(128,0,255,0.5)", "roi99": "rgba(255,255,0,1)" }, "roiShapes": {} }, "quantification": { "appliedQuantID": "quant222" }, "selection": { "roiID": "roi12345", "roiName": "The best region", "locIdxs": [ 3, 5, 7 ] } }, "name": "", "description": "" }
Example (ViewStateHandler_List) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
const contextImgJSON = `
"zoomX": 2,
"showPoints": true,
"showPointBBox": false,
"pointColourScheme": "BW",
"pointBBoxColourScheme": "PURPLE_CYAN",
"contextImageSmoothing": "linear",
"mapLayers": [
{
"expressionID": "Fe",
"opacity": 0.3,
"visible": true,
"displayValueRangeMin": 12,
"displayValueRangeMax": 48.8,
"displayValueShading": "SHADE_VIRIDIS"
}
],
"roiLayers": [
{
"roiID": "roi123",
"opacity": 0.7,
"visible": true
}
],
"contextImage": "file1.jpg",
"elementRelativeShading": true
}`
// Single request results in loading multiple files from S3. First it gets a directory listing...
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String(viewStateS3Path),
},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{
{Key: aws.String(viewStateS3Path + "not-a-widget.json")}, // Not a recognised file name
{Key: aws.String(viewStateS3Path + "spectrum.json")},
{Key: aws.String(viewStateS3Path + "spectrum.txt")}, // Not right extension
{Key: aws.String(viewStateS3Path + "contextImage-map.json")},
{Key: aws.String(viewStateS3Path + "contextImage-analysis.json")},
{Key: aws.String(viewStateS3Path + "contextImage-engineering.json")},
{Key: aws.String(viewStateS3Path + "quantification.json")},
{Key: aws.String(viewStateS3Path + "selection.json")},
{Key: aws.String(viewStateS3Path + "roi.json")},
{Key: aws.String(viewStateS3Path + "analysisLayout.json")},
{Key: aws.String(viewStateS3Path + "histogram-1.json")},
{Key: aws.String(viewStateS3Path + "chord-0.json")},
{Key: aws.String(viewStateS3Path + "chord-1.json")},
{Key: aws.String(viewStateS3Path + "table-undercontext.json")},
{Key: aws.String(viewStateS3Path + "table-underspectrum0.json")},
{Key: aws.String(viewStateS3Path + "binary-underspectrum0.json")},
{Key: aws.String(viewStateS3Path + "ternary-underspectrum2.json")},
{Key: aws.String(viewStateS3Path + "variogram-abc123.json")},
{Key: aws.String(viewStateS3Path + "rgbuImages-33.json")},
{Key: aws.String(viewStateS3Path + "rgbuPlot-underspectrum1.json")},
{Key: aws.String(viewStateS3Path + "parallelogram-55.json")},
{Key: aws.String(viewStateS3Path + "roiQuantTable-ttt.json")},
{Key: aws.String(viewStateS3Path + "spectrum-top1.json")}, // the "new style" version that comes with a position id
},
},
}
// Some of our files are empty, not there, have content
// and they're meant to end up combined into one response...
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "spectrum.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "contextImage-map.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "contextImage-analysis.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "contextImage-engineering.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "quantification.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "selection.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "roi.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "analysisLayout.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "histogram-1.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "chord-0.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "chord-1.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "table-undercontext.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "table-underspectrum0.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "binary-underspectrum0.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "ternary-underspectrum2.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "variogram-abc123.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "rgbuImages-33.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "rgbuPlot-underspectrum1.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "parallelogram-55.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "roiQuantTable-ttt.json"),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "spectrum-top1.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"xrflines": [
{
"visible": true,
"line_info": {
"Z": 12,
"K": true,
"L": true,
"M": true,
"Esc": true
}
}
],
"panX": 32,
"zoomY": 3,
"logScale": false,
"energyCalibration": [
{
"detector": "A",
"eVStart": 0.1,
"eVPerChannel": 10.3
}
]
}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"panY": 10,` + contextImgJSON))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"panY": 11,` + contextImgJSON))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"panY": 12,` + contextImgJSON))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"appliedQuantID": "quant111",
"quantificationByROI": {
"roi22": "quant222",
"roi88": "quant333"
}
}`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"roiID": "roi12345",
"roiName": "The best region",
"locIdxs": [3,5,7],
"pixelSelectionImageName": "image.tif",
"pixelIdxs": [9],
"cropPixelIdxs": [9]
}`))),
},
{ // roi
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"roiColours": {
"roi99": "rgba(255,255,0,1)",
"roi22": "rgba(128,0,255,0.5)"
},
"roiShapes": {}
}`))),
},
{ // analysisLayout
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"topWidgetSelectors": [
"context-image",
"spectrum-widget"
],
"bottomWidgetSelectors": [
"table-widget",
"binary-plot-widget",
"rgbu-plot-widget",
"ternary-plot-widget"
]
}`))),
},
nil, // quant histogram
nil, // chord-0
nil, // chord-1
{ // table
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{"showPureElements": true}`))),
},
{ // table 2
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{"showPureElements": true}`))),
},
{ // binary
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{}`))),
},
{ // ternary
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{}`))),
},
{ // variogram
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{}`))),
},
{ // rgbuImages
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{ "brightness": 1.2 }`))),
},
{ // rgbuPlot
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{ "yChannelA": "B" }`))),
},
{ // parallelogram
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{ "regions": ["A", "B"], "channels": ["R", "G"] }`))),
},
{ // roiQuantTable
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{ "quantIDs": ["quant1", "quant2"], "roi": "the-roi" }`))),
},
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"xrflines": [
{
"visible": false,
"line_info": {
"Z": 12,
"K": true,
"L": true,
"M": true,
"Esc": true
}
}
],
"panX": 30,
"zoomY": 1,
"logScale": false,
"energyCalibration": [
{
"detector": "A",
"eVStart": 0.1,
"eVPerChannel": 10.3
}
]
}`))),
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
mockUser := pixlUser.UserInfo{
Name: "Niko Bellic",
UserID: "600f2a0806b6c70071d3d174",
Permissions: map[string]bool{
"read:data-analysis": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
// Various bits should return in the response...
req, _ := http.NewRequest("GET", "/view-state/TheDataSetID", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 { "analysisLayout": { "topWidgetSelectors": [ "context-image", "spectrum-widget" ], "bottomWidgetSelectors": [ "table-widget", "binary-plot-widget", "rgbu-plot-widget", "ternary-plot-widget" ] }, "spectrum": { "panX": 32, "panY": 0, "zoomX": 1, "zoomY": 3, "spectrumLines": [], "logScale": false, "xrflines": [ { "line_info": { "Z": 12, "K": true, "L": true, "M": true, "Esc": true }, "visible": true } ], "showXAsEnergy": false, "energyCalibration": [ { "detector": "A", "eVStart": 0.1, "eVPerChannel": 10.3 } ] }, "contextImages": { "analysis": { "panX": 0, "panY": 11, "zoomX": 2, "zoomY": 1, "showPoints": true, "showPointBBox": false, "pointColourScheme": "BW", "pointBBoxColourScheme": "PURPLE_CYAN", "contextImage": "file1.jpg", "contextImageSmoothing": "linear", "mapLayers": [ { "expressionID": "Fe", "opacity": 0.3, "visible": true, "displayValueRangeMin": 12, "displayValueRangeMax": 48.8, "displayValueShading": "SHADE_VIRIDIS" } ], "roiLayers": [ { "roiID": "roi123", "opacity": 0.7, "visible": true } ], "elementRelativeShading": true, "brightness": 1, "rgbuChannels": "RGB", "unselectedOpacity": 0.4, "unselectedGrayscale": false, "colourRatioMin": 0, "colourRatioMax": 0, "removeTopSpecularArtifacts": false, "removeBottomSpecularArtifacts": false }, "map": { "panX": 0, "panY": 10, "zoomX": 2, "zoomY": 1, "showPoints": true, "showPointBBox": false, "pointColourScheme": "BW", "pointBBoxColourScheme": "PURPLE_CYAN", "contextImage": "file1.jpg", "contextImageSmoothing": "linear", "mapLayers": [ { "expressionID": "Fe", "opacity": 0.3, "visible": true, "displayValueRangeMin": 12, "displayValueRangeMax": 48.8, "displayValueShading": "SHADE_VIRIDIS" } ], "roiLayers": [ { "roiID": "roi123", "opacity": 0.7, "visible": true } ], "elementRelativeShading": true, "brightness": 1, "rgbuChannels": "RGB", "unselectedOpacity": 0.4, "unselectedGrayscale": false, "colourRatioMin": 0, "colourRatioMax": 0, "removeTopSpecularArtifacts": false, "removeBottomSpecularArtifacts": false } }, "histograms": {}, "chordDiagrams": {}, "ternaryPlots": { "underspectrum2": { "showMmol": false, "expressionIDs": [], "visibleROIs": [] } }, "binaryPlots": { "underspectrum0": { "showMmol": false, "expressionIDs": [], "visibleROIs": [] } }, "tables": { "undercontext": { "showPureElements": true, "order": "atomic-number", "visibleROIs": [] } }, "roiQuantTables": {}, "variograms": {}, "spectrums": { "top1": { "panX": 30, "panY": 0, "zoomX": 1, "zoomY": 1, "spectrumLines": [], "logScale": false, "xrflines": [ { "line_info": { "Z": 12, "K": true, "L": true, "M": true, "Esc": true }, "visible": false } ], "showXAsEnergy": false, "energyCalibration": [ { "detector": "A", "eVStart": 0.1, "eVPerChannel": 10.3 } ] } }, "rgbuPlots": { "underspectrum1": { "minerals": [], "yChannelA": "B", "yChannelB": "", "xChannelA": "", "xChannelB": "", "drawMonochrome": false, "selectedMinXValue": 0, "selectedMaxXValue": 0, "selectedMinYValue": 0, "selectedMaxYValue": 0 } }, "singleAxisRGBU": {}, "rgbuImages": {}, "parallelograms": {}, "annotations": { "savedAnnotations": [] }, "rois": { "roiColours": { "roi22": "rgba(128,0,255,0.5)", "roi99": "rgba(255,255,0,1)" }, "roiShapes": {} }, "quantification": { "appliedQuantID": "quant111" }, "selection": { "roiID": "roi12345", "roiName": "The best region", "locIdxs": [ 3, 5, 7 ], "pixelSelectionImageName": "image.tif", "pixelIdxs": [ 9 ], "cropPixelIdxs": [ 9 ] } }
Example (ViewStateHandler_ListCollections) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
viewStateSavedS3Path := viewStateS3Path + "WorkspaceCollections"
sharedViewStateSavedS3Path := sharedViewStateS3Path + "WorkspaceCollections"
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String(viewStateSavedS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String(sharedViewStateSavedS3Path),
},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{
{Key: aws.String(viewStateSavedS3Path + "/The view state.json"), LastModified: aws.Time(time.Unix(1634731913, 0))},
{Key: aws.String(viewStateSavedS3Path + "/Another-state 123.json"), LastModified: aws.Time(time.Unix(1634731914, 0))},
{Key: aws.String(viewStateSavedS3Path + "/My 10th collection save.json"), LastModified: aws.Time(time.Unix(1634731915, 0))},
},
},
{
Contents: []*s3.Object{
{Key: aws.String(viewStateSavedS3Path + "/For all.json"), LastModified: aws.Time(time.Unix(1634731917, 0))},
},
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
mockUser := pixlUser.UserInfo{
Name: "Niko Bellic",
UserID: "600f2a0806b6c70071d3d174",
Permissions: map[string]bool{
"read:pixlise-settings": true,
},
}
svcs.JWTReader = MockJWTReader{InfoToReturn: &mockUser}
apiRouter := MakeRouter(svcs)
// Exists, success
req, _ := http.NewRequest("GET", "/view-state/collections/TheDataSetID", bytes.NewReader([]byte("")))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 [ { "name": "The view state", "modifiedUnixSec": 1634731913 }, { "name": "Another-state 123", "modifiedUnixSec": 1634731914 }, { "name": "My 10th collection save", "modifiedUnixSec": 1634731915 }, { "name": "shared-For all", "modifiedUnixSec": 1634731917 } ]
Example (ViewStateHandler_List_WithReset) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
// Single request results in loading multiple files from S3. First it gets a directory listing...
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String(viewStateS3Path),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String(viewStateS3Path),
},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{
{Key: aws.String(viewStateS3Path + "not-a-widget.json")}, // Not a recognised file name
{Key: aws.String(viewStateS3Path + "Workspaces/workspace.json")}, // workspace file, should not be deleted
{Key: aws.String(viewStateS3Path + "WorkspaceCollections/collection.json")}, // collection file, should not be deleted
{Key: aws.String(viewStateS3Path + "spectrum.json")},
},
},
{
Contents: []*s3.Object{
{Key: aws.String(viewStateS3Path + "Workspaces/workspace.json")}, // workspace file, should not be deleted
{Key: aws.String(viewStateS3Path + "WorkspaceCollections/collection.json")}, // collection file, should not be deleted
},
},
}
mockS3.ExpDeleteObjectInput = []s3.DeleteObjectInput{
// Test 4
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "not-a-widget.json"),
},
// Test 5
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "spectrum.json"),
},
}
mockS3.QueuedDeleteObjectOutput = []*s3.DeleteObjectOutput{
{},
{},
}
// Querying blessed quant (because quant it has is empty)
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String("UserContent/shared/TheDataSetID/Quantifications/blessed-quant.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
nil, // There isn't a blessed quant!
}
// Various bits should return in the response...
req, _ := http.NewRequest("GET", "/view-state/TheDataSetID?reset=true", nil)
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200 { "analysisLayout": { "topWidgetSelectors": [], "bottomWidgetSelectors": [] }, "spectrum": { "panX": 0, "panY": 0, "zoomX": 1, "zoomY": 1, "spectrumLines": [], "logScale": true, "xrflines": [], "showXAsEnergy": false, "energyCalibration": [] }, "contextImages": {}, "histograms": {}, "chordDiagrams": {}, "ternaryPlots": {}, "binaryPlots": {}, "tables": {}, "roiQuantTables": {}, "variograms": {}, "spectrums": {}, "rgbuPlots": {}, "singleAxisRGBU": {}, "rgbuImages": {}, "parallelograms": {}, "annotations": { "savedAnnotations": [] }, "rois": { "roiColours": {}, "roiShapes": {} }, "quantification": { "appliedQuantID": "" }, "selection": { "roiID": "", "roiName": "", "locIdxs": [] } }
Example (ViewStateHandler_Post) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
// POST not implemented! Should return 405
req, _ := http.NewRequest("POST", "/view-state/TheDataSetID", bytes.NewReader([]byte(`{
"quantification": "The Name",
"roi": "12"
}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 405
Example (ViewStateHandler_PutCollection) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "WorkspaceCollections/The best collection 23_09_2021.json"), Body: bytes.NewReader([]byte(`{
"viewStateIDs": [
"state one",
"second View State",
"Third-state"
],
"name": "The best collection 23_09_2021",
"description": "the desc",
"viewStates": null,
"shared": false,
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668142579,
"mod_unix_time_sec": 1668142579
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.TimeStamper = ×tamper.MockTimeNowStamper{
QueuedTimeStamps: []int64{1668142579},
}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("PUT", "/view-state/collections/TheDataSetID/The best collection 23_09_2021", bytes.NewReader([]byte(`{
"viewStateIDs": [
"state one",
"second View State",
"Third-state"
],
"name": "The wrong name",
"description": "the desc"
}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (ViewStateHandler_PutSaved_Force) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "Workspaces/viewstate123.json"), Body: bytes.NewReader([]byte(`{
"viewState": {
"analysisLayout": {
"topWidgetSelectors": [],
"bottomWidgetSelectors": []
},
"spectrum": {
"panX": 0,
"panY": 0,
"zoomX": 1,
"zoomY": 1,
"spectrumLines": [],
"logScale": true,
"xrflines": [],
"showXAsEnergy": false,
"energyCalibration": []
},
"contextImages": {},
"histograms": {},
"chordDiagrams": {},
"ternaryPlots": {},
"binaryPlots": {},
"tables": {},
"roiQuantTables": {},
"variograms": {},
"spectrums": {},
"rgbuPlots": {},
"singleAxisRGBU": {},
"rgbuImages": {},
"parallelograms": {},
"annotations": {
"savedAnnotations": []
},
"rois": {
"roiColours": {
"roi22": "rgba(128,0,255,0.5)",
"roi99": "rgba(255,255,0,1)"
},
"roiShapes": {}
},
"quantification": {
"appliedQuantID": "quant111"
},
"selection": {
"roiID": "roi12345",
"roiName": "The best region",
"locIdxs": [
3,
5,
7
]
}
},
"name": "viewstate123",
"description": "",
"shared": false,
"creator": {
"name": "Niko Bellic",
"user_id": "600f2a0806b6c70071d3d174",
"email": "niko@spicule.co.uk"
},
"create_unix_time_sec": 1668142579,
"mod_unix_time_sec": 1668142579
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.TimeStamper = ×tamper.MockTimeNowStamper{
QueuedTimeStamps: []int64{1668142579},
}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("PUT", "/view-state/saved/TheDataSetID/viewstate123?force=true", bytes.NewReader([]byte(`{
"viewState": {
"analysisLayout": {
"bottomWidgetSelectors": []
},
"rois": {
"roiColours": {
"roi22": "rgba(128,0,255,0.5)",
"roi99": "rgba(255,255,0,1)"
},
"roiShapes": {}
},
"quantification": {
"appliedQuantID": "quant111",
"quantificationByROI": {
"roi22": "quant222",
"roi88": "quant333"
}
},
"selection": {
"roiID": "roi12345",
"roiName": "The best region",
"locIdxs": [
3,
5,
7
]
}
},
"name": "viewstate123 INCORRECT VIEW STATE SHOULD BE REPLACED!"
}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (ViewStateHandler_PutSaved_OverwriteAlreadyExists) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// Checking if it exists
mockS3.ExpGetObjectInput = []s3.GetObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "Workspaces/viewstate123.json"),
},
}
mockS3.QueuedGetObjectOutput = []*s3.GetObjectOutput{
{
Body: ioutil.NopCloser(bytes.NewReader([]byte(`{
"viewState": {
"analysisLayout": {
"bottomWidgetSelectors": []
},
"spectrum": {
"panX": 993,
"panY": 0,
"zoomX": 1,
"zoomY": 1,
"spectrumLines": [],
"logScale": true,
"xrflines": [],
"showXAsEnergy": false,
"energyCalibration": []
},
"contextImages": {},
"histograms": {},
"chordDiagrams": {},
"ternaryPlots": {},
"binaryPlots": {},
"tables": {},
"roiQuantTables": {},
"variograms": {},
"spectrums": {},
"rgbuPlots": {},
"singleAxisRGBU": {},
"rgbuImages": {},
"parallelograms": {},
"annotations": {
"savedAnnotations": []
},
"rois": {
"roiColours": {
"roi22": "rgba(128,0,255,0.5)",
"roi99": "rgba(255,255,0,1)"
}
},
"quantification": {
"appliedQuantID": "quant111"
},
"selection": {
"roiID": "roi12345",
"roiName": "The best region",
"locIdxs": [
3,
5,
7
]
},
"name": "",
"description": ""
}
}`))),
},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
svcs.TimeStamper = ×tamper.MockTimeNowStamper{
QueuedTimeStamps: []int64{1668142579},
}
apiRouter := MakeRouter(svcs)
req, _ := http.NewRequest("PUT", "/view-state/saved/TheDataSetID/viewstate123", bytes.NewReader([]byte(`{
"viewState": {
"analysisLayout": {
"bottomWidgetSelectors": []
},
"rois": {
"roiColours": {
"roi22": "rgba(128,0,255,0.5)",
"roi99": "rgba(255,255,0,1)"
}
},
"quantification": {
"appliedQuantID": "quant111",
"quantificationByROI": {
"roi22": "quant222",
"roi88": "quant333"
}
},
"selection": {
"roiID": "roi12345",
"roiName": "The best region",
"locIdxs": [
3,
5,
7
]
}
},
"name": "viewstate123 INCORRECT VIEW STATE SHOULD BE REPLACED!"
}`)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 409 viewstate123 already exists
Example (ViewStateHandler_Put_all) ¶
Saving an entire view state. This clears view state files in the S3 directory we're writing to, and writes new ones based on the view state being passed in
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// Expecting a listing of view state dir
mockS3.ExpListObjectsV2Input = []s3.ListObjectsV2Input{
{
Bucket: aws.String(UsersBucketForUnitTest), Prefix: aws.String(viewStateS3Path),
},
}
mockS3.QueuedListObjectsV2Output = []*s3.ListObjectsV2Output{
{
Contents: []*s3.Object{
{Key: aws.String(viewStateS3Path + "not-a-widget.json")}, // Not a recognised file name
{Key: aws.String(viewStateS3Path + "Workspaces/workspace.json")}, // workspace file, should not be deleted
{Key: aws.String(viewStateS3Path + "WorkspaceCollections/collection.json")}, // collection file, should not be deleted
{Key: aws.String(viewStateS3Path + "spectrum-top1.json")},
},
},
}
// Expecting to delete only view state files (not workspace/collection)
mockS3.ExpDeleteObjectInput = []s3.DeleteObjectInput{
// Test 4
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "not-a-widget.json"),
},
// Test 5
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "spectrum-top1.json"),
},
}
mockS3.QueuedDeleteObjectOutput = []*s3.DeleteObjectOutput{
{},
{},
}
// Expecting a PUT for layout, selection, quant, ROI and each widget
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "annotations.json"), Body: bytes.NewReader([]byte(`{
"savedAnnotations": []
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "roi.json"), Body: bytes.NewReader([]byte(`{
"roiColours": {
"roi22": "rgba(128,0,255,0.5)",
"roi33": "rgba(255,255,0,1)"
},
"roiShapes": {}
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "quantification.json"), Body: bytes.NewReader([]byte(`{
"appliedQuantID": "9qntb8w2joq4elti"
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "selection.json"), Body: bytes.NewReader([]byte(`{
"roiID": "",
"roiName": "",
"locIdxs": [
345,
347,
348,
1273
]
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "analysisLayout.json"), Body: bytes.NewReader([]byte(`{
"topWidgetSelectors": [
"context-image",
"spectrum-widget"
],
"bottomWidgetSelectors": [
"table-widget",
"binary-plot-widget",
"rgbu-plot-widget",
"ternary-plot-widget"
]
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "contextImage-analysis.json"), Body: bytes.NewReader([]byte(`{
"panX": -636.63446,
"panY": -674.23505,
"zoomX": 2.6251905,
"zoomY": 2.6251905,
"showPoints": true,
"showPointBBox": true,
"pointColourScheme": "PURPLE_CYAN",
"pointBBoxColourScheme": "PURPLE_CYAN",
"contextImage": "PCCR0257_0689789827_000MSA_N008000008906394300060LUD01.tif",
"contextImageSmoothing": "linear",
"mapLayers": [],
"roiLayers": [
{
"roiID": "AllPoints",
"opacity": 1,
"visible": false
},
{
"roiID": "SelectedPoints",
"opacity": 1,
"visible": false
}
],
"elementRelativeShading": true,
"brightness": 1,
"rgbuChannels": "R/G",
"unselectedOpacity": 0.3,
"unselectedGrayscale": false,
"colourRatioMin": 0.5,
"colourRatioMax": 2.25,
"removeTopSpecularArtifacts": false,
"removeBottomSpecularArtifacts": false
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "contextImage-map.json"), Body: bytes.NewReader([]byte(`{
"panX": -116.896935,
"panY": -145.20177,
"zoomX": 1.0904286,
"zoomY": 1.0904286,
"showPoints": true,
"showPointBBox": true,
"pointColourScheme": "PURPLE_CYAN",
"pointBBoxColourScheme": "PURPLE_CYAN",
"contextImage": "",
"contextImageSmoothing": "linear",
"mapLayers": [],
"roiLayers": [
{
"roiID": "AllPoints",
"opacity": 1,
"visible": false
},
{
"roiID": "SelectedPoints",
"opacity": 1,
"visible": false
}
],
"elementRelativeShading": true,
"brightness": 1,
"rgbuChannels": "RGB",
"unselectedOpacity": 0.4,
"unselectedGrayscale": false,
"colourRatioMin": 0,
"colourRatioMax": 0,
"removeTopSpecularArtifacts": false,
"removeBottomSpecularArtifacts": false
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "ternary-underspectrum2.json"), Body: bytes.NewReader([]byte(`{
"showMmol": false,
"expressionIDs": [
"vge9tz6fkbi2ha1p",
"shared-j1g1sx285s6yqjih",
"r4zd5s2tfgr8rahy"
],
"visibleROIs": [
"AllPoints",
"SelectedPoints"
]
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "rgbuPlot-underspectrum1.json"), Body: bytes.NewReader([]byte(`{
"minerals": [],
"yChannelA": "B",
"yChannelB": "U",
"xChannelA": "R",
"xChannelB": "B",
"drawMonochrome": false,
"selectedMinXValue": 0,
"selectedMaxXValue": 0,
"selectedMinYValue": 0,
"selectedMaxYValue": 0
}`)),
},
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "spectrum-top1.json"), Body: bytes.NewReader([]byte(`{
"panX": -53.19157,
"panY": -37.737877,
"zoomX": 3.5776386,
"zoomY": 1.3382256,
"spectrumLines": [
{
"roiID": "AllPoints",
"lineExpressions": [
"bulk(A)",
"bulk(B)"
]
},
{
"roiID": "SelectedPoints",
"lineExpressions": [
"bulk(A)",
"bulk(B)"
]
}
],
"logScale": true,
"xrflines": [],
"showXAsEnergy": true,
"energyCalibration": [
{
"detector": "A",
"eVStart": -20.759016,
"eVPerChannel": 7.8629937
},
{
"detector": "B",
"eVStart": -20.759016,
"eVPerChannel": 7.8629937
}
]
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
{},
{},
{},
{},
{},
{},
{},
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
const wholeState = `{
"analysisLayout": {
"topWidgetSelectors": ["context-image", "spectrum-widget"],
"bottomWidgetSelectors": ["table-widget", "binary-plot-widget", "rgbu-plot-widget", "ternary-plot-widget"]
},
"contextImages": {
"analysis": {
"panX": -636.63446,
"panY": -674.23505,
"zoomX": 2.6251905,
"zoomY": 2.6251905,
"showPoints": true,
"showPointBBox": true,
"pointColourScheme": "PURPLE_CYAN",
"pointBBoxColourScheme": "PURPLE_CYAN",
"contextImage": "PCCR0257_0689789827_000MSA_N008000008906394300060LUD01.tif",
"contextImageSmoothing": "linear",
"mapLayers": [],
"roiLayers": [{
"roiID": "AllPoints",
"opacity": 1,
"visible": false
}, {
"roiID": "SelectedPoints",
"opacity": 1,
"visible": false
}],
"elementRelativeShading": true,
"brightness": 1,
"rgbuChannels": "R/G",
"unselectedOpacity": 0.3,
"unselectedGrayscale": false,
"colourRatioMin": 0.5,
"colourRatioMax": 2.25,
"removeTopSpecularArtifacts": false,
"removeBottomSpecularArtifacts": false
},
"map": {
"panX": -116.896935,
"panY": -145.20177,
"zoomX": 1.0904286,
"zoomY": 1.0904286,
"showPoints": true,
"showPointBBox": true,
"pointColourScheme": "PURPLE_CYAN",
"pointBBoxColourScheme": "PURPLE_CYAN",
"contextImage": "",
"contextImageSmoothing": "linear",
"mapLayers": [],
"roiLayers": [{
"roiID": "AllPoints",
"opacity": 1,
"visible": false
}, {
"roiID": "SelectedPoints",
"opacity": 1,
"visible": false
}],
"elementRelativeShading": true,
"brightness": 1,
"rgbuChannels": "RGB",
"unselectedOpacity": 0.4,
"unselectedGrayscale": false,
"colourRatioMin": 0,
"colourRatioMax": 0,
"removeTopSpecularArtifacts": false,
"removeBottomSpecularArtifacts": false
}
},
"histograms": {},
"chordDiagrams": {},
"ternaryPlots": {
"undercontext": {
"showMmol": false,
"expressionIDs": ["expr-elem-K2O-%(Combined)", "expr-elem-Na2O-%(Combined)", "expr-elem-MgO-%(Combined)"],
"visibleROIs": ["AllPoints", "9s5vkwjxl6539jbp", "tsiaam7uvs00yjom", "und4hnr30l61ha3u", "newa1c3apifnygtm", "y0o44g8n4z3ts40x", "SelectedPoints"]
},
"underspectrum1": {
"showMmol": false,
"expressionIDs": ["expr-elem-Na2O-%(Combined)", "shared-uds1s1t27qf97b03", "expr-elem-MgO-%(Combined)"],
"visibleROIs": ["AllPoints", "SelectedPoints"]
},
"underspectrum2": {
"showMmol": false,
"expressionIDs": ["vge9tz6fkbi2ha1p", "shared-j1g1sx285s6yqjih", "r4zd5s2tfgr8rahy"],
"visibleROIs": ["AllPoints", "SelectedPoints"]
}
},
"binaryPlots": {
"undercontext": {
"showMmol": false,
"expressionIDs": ["", ""],
"visibleROIs": ["AllPoints", "SelectedPoints"]
},
"underspectrum1": {
"showMmol": false,
"expressionIDs": ["expr-elem-SiO2-%(Combined)", "expr-elem-Al2O3-%(Combined)"],
"visibleROIs": ["AllPoints", "SelectedPoints"]
}
},
"tables": {
"underspectrum0": {
"showPureElements": false,
"order": "atomic-number",
"visibleROIs": ["AllPoints", "SelectedPoints", "jvi1p1awm77fsywc", "6mbhyd8nbyj4um4p", "1mk9xra5qejh3tvk"]
}
},
"roiQuantTables": {},
"variograms": {
"undercontext": {
"expressionIDs": ["expr-elem-K2O-%"],
"visibleROIs": ["AllPoints", "SelectedPoints"],
"varioModel": "exponential",
"maxDistance": 6.5188847,
"binCount": 1668,
"drawModeVector": false
}
},
"spectrums": {
"top0": {
"panX": -137.13159,
"panY": 0,
"zoomX": 1.6592865,
"zoomY": 1,
"spectrumLines": [{
"roiID": "AllPoints",
"lineExpressions": ["bulk(A)", "bulk(B)"]
}, {
"roiID": "SelectedPoints",
"lineExpressions": ["bulk(A)", "bulk(B)"]
}],
"logScale": true,
"xrflines": [],
"showXAsEnergy": true,
"energyCalibration": [{
"detector": "A",
"eVStart": -18.5,
"eVPerChannel": 7.862
}, {
"detector": "B",
"eVStart": -22.4,
"eVPerChannel": 7.881
}]
},
"top1": {
"panX": -53.19157,
"panY": -37.737877,
"zoomX": 3.5776386,
"zoomY": 1.3382256,
"spectrumLines": [{
"roiID": "AllPoints",
"lineExpressions": ["bulk(A)", "bulk(B)"]
}, {
"roiID": "SelectedPoints",
"lineExpressions": ["bulk(A)", "bulk(B)"]
}],
"logScale": true,
"xrflines": [],
"showXAsEnergy": true,
"energyCalibration": [{
"detector": "A",
"eVStart": -20.759016,
"eVPerChannel": 7.8629937
}, {
"detector": "B",
"eVStart": -20.759016,
"eVPerChannel": 7.8629937
}]
},
"undercontext": {
"panX": 0,
"panY": 0,
"zoomX": 1,
"zoomY": 1,
"spectrumLines": [{
"roiID": "AllPoints",
"lineExpressions": ["bulk(A)"]
}],
"logScale": true,
"xrflines": [],
"showXAsEnergy": true,
"energyCalibration": [{
"detector": "A",
"eVStart": -18.5,
"eVPerChannel": 7.862
}, {
"detector": "B",
"eVStart": -22.4,
"eVPerChannel": 7.881
}]
},
"underspectrum0": {
"panX": 0,
"panY": 0,
"zoomX": 1,
"zoomY": 1,
"spectrumLines": [{
"roiID": "AllPoints",
"lineExpressions": ["bulk(A)", "bulk(B)"]
}, {
"roiID": "SelectedPoints",
"lineExpressions": ["bulk(A)"]
}],
"logScale": true,
"xrflines": [],
"showXAsEnergy": true,
"energyCalibration": [{
"detector": "A",
"eVStart": -18.5,
"eVPerChannel": 7.862
}, {
"detector": "B",
"eVStart": -22.4,
"eVPerChannel": 7.881
}]
},
"underspectrum1": {
"panX": 0,
"panY": 0,
"zoomX": 1,
"zoomY": 1,
"spectrumLines": [{
"roiID": "AllPoints",
"lineExpressions": ["bulk(A)", "bulk(B)"]
}, {
"roiID": "SelectedPoints",
"lineExpressions": ["bulk(A)", "bulk(B)"]
}],
"logScale": true,
"xrflines": [],
"showXAsEnergy": true,
"energyCalibration": [{
"detector": "A",
"eVStart": -18.5,
"eVPerChannel": 7.862
}, {
"detector": "B",
"eVStart": -22.4,
"eVPerChannel": 7.881
}]
},
"underspectrum2": {
"panX": 0,
"panY": 0,
"zoomX": 1,
"zoomY": 1,
"spectrumLines": [{
"roiID": "SelectedPoints",
"lineExpressions": ["bulk(A)", "bulk(B)"]
}],
"logScale": true,
"xrflines": [],
"showXAsEnergy": true,
"energyCalibration": [{
"detector": "A",
"eVStart": -18.5,
"eVPerChannel": 7.862
}, {
"detector": "B",
"eVStart": -22.4,
"eVPerChannel": 7.881
}]
}
},
"rgbuPlots": {
"underspectrum0": {
"minerals": ["plag", "sanidine", "microline", "aug", "opx", "Fo89", "Fo11", "Chalcedor", "calsite", "gypsum", "dolomite", "FeS2", "FeS", "Fe3O4"],
"yChannelA": "G",
"yChannelB": "R",
"xChannelA": "B",
"xChannelB": "R",
"drawMonochrome": false,
"selectedMinXValue": 0,
"selectedMaxXValue": 0,
"selectedMinYValue": 0,
"selectedMaxYValue": 0
},
"underspectrum1": {
"minerals": [],
"yChannelA": "B",
"yChannelB": "U",
"xChannelA": "R",
"xChannelB": "B",
"drawMonochrome": false,
"selectedMinXValue": 0,
"selectedMaxXValue": 0,
"selectedMinYValue": 0,
"selectedMaxYValue": 0
},
"underspectrum2": {
"minerals": [],
"yChannelA": "U",
"yChannelB": "R",
"xChannelA": "U",
"xChannelB": "B",
"drawMonochrome": false,
"selectedMinXValue": 0,
"selectedMaxXValue": 0,
"selectedMinYValue": 0,
"selectedMaxYValue": 0
}
},
"singleAxisRGBU": {},
"rgbuImages": {
"top1": {
"logColour": false,
"brightness": 1
}
},
"parallelograms": {},
"annotations": {
"savedAnnotations": []
},
"rois": {
"roiColours": {
"roi22": "rgba(128,0,255,0.5)",
"roi33": "rgba(255,255,0,1)"
},
"roiShapes": {}
},
"quantification": {
"appliedQuantID": "9qntb8w2joq4elti"
},
"selection": {
"roiID": "",
"roiName": "",
"locIdxs": [345, 347, 348, 1273]
}
}`
const routePath = "/view-state/TheDataSetID/"
req, _ := http.NewRequest("PUT", routePath+"all", bytes.NewReader([]byte(wholeState)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (ViewStateHandler_Put_analysisLayout) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "analysisLayout.json"), Body: bytes.NewReader([]byte(`{
"topWidgetSelectors": [
"spectrum"
],
"bottomWidgetSelectors": [
"chord",
"binary"
]
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
const putItem = `{
"topWidgetSelectors": [
"spectrum"
],
"bottomWidgetSelectors": [
"chord",
"binary"
]
}`
const routePath = "/view-state/TheDataSetID/"
req, _ := http.NewRequest("PUT", routePath+"analysisLayout", bytes.NewReader([]byte(putItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (ViewStateHandler_Put_binary) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "binary-bottom12.json"), Body: bytes.NewReader([]byte(`{
"showMmol": false,
"expressionIDs": [
"Fe",
"Ca"
],
"visibleROIs": [
"roi123",
"roi456"
]
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
const putItem = `{
"showMmol": false,
"visibleROIs": [
"roi123",
"roi456"
],
"expressionIDs": [
"Fe",
"Ca"
]
}`
const routePath = "/view-state/TheDataSetID/"
req, _ := http.NewRequest("PUT", routePath+"binary-bottom12", bytes.NewReader([]byte(putItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (ViewStateHandler_Put_chord) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "chord-111.json"), Body: bytes.NewReader([]byte(`{
"showForSelection": false,
"expressionIDs": [
"abc123"
],
"displayROI": "roi999",
"threshold": 0.8,
"drawMode": "POSITIVE"
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
const putItem = `{
"showForSelection": false,
"expressionIDs": [
"abc123"
],
"displayROI": "roi999",
"threshold": 0.8,
"drawMode": "POSITIVE"
}`
const routePath = "/view-state/TheDataSetID/"
req, _ := http.NewRequest("PUT", routePath+"chord-111", bytes.NewReader([]byte(putItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (ViewStateHandler_Put_contextImage) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "contextImage-analysis.json"), Body: bytes.NewReader([]byte(`{
"panX": 12,
"panY": 0,
"zoomX": 1,
"zoomY": 0,
"showPoints": true,
"showPointBBox": false,
"pointColourScheme": "BW",
"pointBBoxColourScheme": "PURPLE_CYAN",
"contextImage": "context123.png",
"contextImageSmoothing": "nearest",
"mapLayers": [
{
"expressionID": "Ca",
"opacity": 0.1,
"visible": false,
"displayValueRangeMin": 12,
"displayValueRangeMax": 48.8,
"displayValueShading": "SHADE_VIRIDIS"
},
{
"expressionID": "Ti",
"opacity": 0.4,
"visible": true,
"displayValueRangeMin": 24,
"displayValueRangeMax": 25.5,
"displayValueShading": "SHADE_PURPLE"
}
],
"roiLayers": [
{
"roiID": "roi111",
"opacity": 0.8,
"visible": true
}
],
"elementRelativeShading": false,
"brightness": 1.3,
"rgbuChannels": "GRU",
"unselectedOpacity": 0.2,
"unselectedGrayscale": true,
"colourRatioMin": 0,
"colourRatioMax": 1.3,
"removeTopSpecularArtifacts": false,
"removeBottomSpecularArtifacts": false
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
const putItem = `{
"panX": 12,
"zoomX": 1,
"showPoints": true,
"showPointBBox": false,
"pointColourScheme": "BW",
"pointBBoxColourScheme": "PURPLE_CYAN",
"contextImage": "context123.png",
"contextImageSmoothing": "nearest",
"brightness": 1.3,
"rgbuChannels": "GRU",
"unselectedOpacity": 0.2,
"unselectedGrayscale": true,
"colourRatioMax": 1.3,
"mapLayers": [
{
"expressionID": "Ca",
"opacity": 0.1,
"visible": false,
"displayValueRangeMin": 12,
"displayValueRangeMax": 48.8,
"displayValueShading": "SHADE_VIRIDIS"
},
{
"expressionID": "Ti",
"opacity": 0.4,
"visible": true,
"displayValueRangeMin": 24,
"displayValueRangeMax": 25.5,
"displayValueShading": "SHADE_PURPLE"
}
],
"roiLayers": [
{
"roiID": "roi111",
"opacity": 0.8,
"visible": true
}
]
}`
const routePath = "/view-state/TheDataSetID/"
req, _ := http.NewRequest("PUT", routePath+"contextImage-analysis", bytes.NewReader([]byte(putItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (ViewStateHandler_Put_histogram) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "histogram-top-left.json"), Body: bytes.NewReader([]byte(`{
"showStdDeviation": true,
"logScale": true,
"expressionIDs": [
"Fe",
"Ca"
],
"visibleROIs": [
"roi123",
"roi456",
"roi789"
]
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
const putItem = `{
"showStdDeviation": true,
"logScale": true,
"expressionIDs": [
"Fe",
"Ca"
],
"visibleROIs": [
"roi123",
"roi456",
"roi789"
]
}`
const routePath = "/view-state/TheDataSetID/"
req, _ := http.NewRequest("PUT", routePath+"histogram-top-left", bytes.NewReader([]byte(putItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (ViewStateHandler_Put_parallelogram) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "parallelogram-5.json"), Body: bytes.NewReader([]byte(`{
"regions": [
"regionA",
"regionB",
"regionC"
],
"channels": [
"R",
"G",
"B",
"U"
]
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
const putItem = `{
"regions": [
"regionA",
"regionB",
"regionC"
],
"channels": [
"R",
"G",
"B",
"U"
]
}`
const routePath = "/view-state/TheDataSetID/"
req, _ := http.NewRequest("PUT", routePath+"parallelogram-5", bytes.NewReader([]byte(putItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (ViewStateHandler_Put_quantification) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "quantification.json"), Body: bytes.NewReader([]byte(`{
"appliedQuantID": "54321"
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
const putItem = `{
"appliedQuantID": "54321"
}`
const routePath = "/view-state/TheDataSetID/"
// Spectrum
req, _ := http.NewRequest("PUT", routePath+"quantification", bytes.NewReader([]byte(putItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (ViewStateHandler_Put_rgbuImages) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "rgbuImages-5.json"), Body: bytes.NewReader([]byte(`{
"logColour": false,
"brightness": 1.2
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
const putItem = `{
"logColour": false,
"brightness": 1.2
}`
const routePath = "/view-state/TheDataSetID/"
req, _ := http.NewRequest("PUT", routePath+"rgbuImages-5", bytes.NewReader([]byte(putItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (ViewStateHandler_Put_rgbuPlots) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "rgbuPlot-5.json"), Body: bytes.NewReader([]byte(`{
"minerals": [
"Plagioclase",
"Olivine"
],
"yChannelA": "B",
"yChannelB": "U",
"xChannelA": "R",
"xChannelB": "G",
"drawMonochrome": true,
"selectedMinXValue": 0,
"selectedMaxXValue": 0,
"selectedMinYValue": 0,
"selectedMaxYValue": 0
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
const putItem = `{
"xChannelA": "R",
"xChannelB": "G",
"yChannelA": "B",
"yChannelB": "U",
"drawMonochrome": true,
"selectedMinXValue": 0,
"selectedMaxXValue": 0,
"selectedMinYValue": 0,
"selectedMaxYValue": 0,
"minerals": [
"Plagioclase",
"Olivine"
]
}`
const routePath = "/view-state/TheDataSetID/"
req, _ := http.NewRequest("PUT", routePath+"rgbuPlot-5", bytes.NewReader([]byte(putItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (ViewStateHandler_Put_roi) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "roi.json"), Body: bytes.NewReader([]byte(`{
"roiColours": {
"roi22": "rgba(128,0,255,0.5)",
"roi33": "rgba(255,255,0,1)"
},
"roiShapes": {}
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
const putItem = `{
"roiColours": {
"roi33": "rgba(255,255,0,1)",
"roi22": "rgba(128,0,255,0.5)"
},
"roiShapes": {}
}`
const routePath = "/view-state/TheDataSetID/"
req, _ := http.NewRequest("PUT", routePath+"roi", bytes.NewReader([]byte(putItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (ViewStateHandler_Put_roiQuantTable) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "roiQuantTable-5.json"), Body: bytes.NewReader([]byte(`{
"roi": "something",
"quantIDs": [
"quant1",
"Q2"
]
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
const putItem = `{
"roi": "something",
"quantIDs": [
"quant1",
"Q2"
]
}`
const routePath = "/view-state/TheDataSetID/"
req, _ := http.NewRequest("PUT", routePath+"roiQuantTable-5", bytes.NewReader([]byte(putItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (ViewStateHandler_Put_selection) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "selection.json"), Body: bytes.NewReader([]byte(`{
"roiID": "3333",
"roiName": "Dark patch",
"locIdxs": [
999,
888,
777
],
"pixelSelectionImageName": "file.tif",
"pixelIdxs": [
333
],
"cropPixelIdxs": [
333,
334
]
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
const putItem = `{
"roiID": "3333",
"roiName": "Dark patch",
"locIdxs": [
999,
888,
777
],
"pixelSelectionImageName": "file.tif",
"pixelIdxs": [
333
],
"cropPixelIdxs": [
333,
334
]
}`
const routePath = "/view-state/TheDataSetID/"
req, _ := http.NewRequest("PUT", routePath+"selection", bytes.NewReader([]byte(putItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (ViewStateHandler_Put_spectrum_oldway_ShouldBeRejected) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
const putItem = `{
"panX": 12,
"zoomX": 1,
"energyCalibration": [
{
"detector": "B",
"eVStart": 12.5,
"eVPerChannel": 17.8
}
],
"logScale": true,
"spectrumLines": [
{
"roiID": "dataset",
"lineExpressions": [
"bulk(A)",
"bulk(B)"
]
},
{
"roiID": "selection",
"lineExpressions": [
"sum(bulk(A), bulk(B))"
]
},
{
"roiID": "roi-123",
"lineExpressions": [
"sum(bulk(A), bulk(B))"
]
}
],
"xrflines": [
{
"visible": true,
"line_info": {
"Z": 12,
"K": true,
"L": true,
"M": true,
"Esc": true
}
}
],
"showXAsEnergy": true
}`
const routePath = "/view-state/TheDataSetID/"
req, _ := http.NewRequest("PUT", routePath+"spectrum", bytes.NewReader([]byte(putItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 400 Unknown widget: spectrum
Example (ViewStateHandler_Put_table) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "table-5.json"), Body: bytes.NewReader([]byte(`{
"showPureElements": false,
"order": "something",
"visibleROIs": [
"roi123",
"roi456"
]
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
const putItem = `{
"showPureElements": false,
"order": "something",
"visibleROIs": [
"roi123",
"roi456"
]
}`
const routePath = "/view-state/TheDataSetID/"
req, _ := http.NewRequest("PUT", routePath+"table-5", bytes.NewReader([]byte(putItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Example (ViewStateHandler_Put_ternary) ¶
var mockS3 awsutil.MockS3Client
defer mockS3.FinishTest()
// NOTE: PUT expected JSON needs to have spaces not tabs
mockS3.ExpPutObjectInput = []s3.PutObjectInput{
{
Bucket: aws.String(UsersBucketForUnitTest), Key: aws.String(viewStateS3Path + "ternary-5.json"), Body: bytes.NewReader([]byte(`{
"showMmol": false,
"expressionIDs": [
"Fe",
"Ca",
"Sr"
],
"visibleROIs": [
"roi123",
"roi456"
]
}`)),
},
}
mockS3.QueuedPutObjectOutput = []*s3.PutObjectOutput{
{},
}
svcs := MakeMockSvcs(&mockS3, nil, nil, nil)
apiRouter := MakeRouter(svcs)
const putItem = `{
"showMmol": false,
"visibleROIs": [
"roi123",
"roi456"
],
"expressionIDs": [
"Fe",
"Ca",
"Sr"
]
}`
const routePath = "/view-state/TheDataSetID/"
req, _ := http.NewRequest("PUT", routePath+"ternary-5", bytes.NewReader([]byte(putItem)))
resp := executeRequest(req, apiRouter.Router)
fmt.Println(resp.Code)
fmt.Println(resp.Body)
Output: 200
Index ¶
- func InitAuth0ManagementAPI(cfg config.APIConfig) (*management.Management, error)
- func MakeRouter(svcs services.APIServices) apiRouter.ApiObjectRouter
- func PrometheusMiddleware(next http.Handler) http.Handler
- type AnnotationLookup
- type AnnotationPoint
- type ByAtomicNumber
- type ByJobID
- type ByReferencedID
- type ChannelConfig
- type ComponentVersion
- type ComponentVersionsGetResponse
- type Config
- type ElementSet
- type ElementSetLookup
- type FullScreenAnnotationItem
- type GlobalData
- type HintsData
- type LoggerMiddleware
- type Method
- type MultiQuantificationComparisonRequest
- type MultiQuantificationComparisonResponse
- type QuantCombineItem
- type QuantCombineList
- type QuantCombineRequest
- type QuantCombineSummaryResponse
- type QuantItem
- type QuantListingResponse
- type QuantTable
- type RGBMix
- type RGBMixInput
- type RGBMixLookup
- type SpectrumAnnotationLine
- type SummaryRow
- type TestData
- type UserDiffractionPeak
- type UserEditRequest
- type UserSubscriptions
- type Workspace
- type WorkspaceCollection
Examples ¶
- Package (CalculateTotals_AB_NeedsCombined)
- Package (CalculateTotals_NoPMC)
- Package (CalculateTotals_Success)
- Package (DatasetCreatePost_BadFormat)
- Package (DatasetCreatePost_BadZip)
- Package (DatasetCreatePost_CantCheckExists)
- Package (DatasetCreatePost_Exists)
- Package (DatasetCreatePost_Success)
- Package (DatasetCustomImagesDelete)
- Package (DatasetCustomImagesGet_matched)
- Package (DatasetCustomImagesGet_rgbu)
- Package (DatasetCustomImagesGet_unaligned)
- Package (DatasetCustomImagesList_matched)
- Package (DatasetCustomImagesList_missingtype)
- Package (DatasetCustomImagesList_rgbu)
- Package (DatasetCustomImagesList_unaligned)
- Package (DatasetCustomImagesPost_badfilename)
- Package (DatasetCustomImagesPost_badtype)
- Package (DatasetCustomImagesPost_matched)
- Package (DatasetCustomImagesPost_rgbu)
- Package (DatasetCustomImagesPost_unaligned)
- Package (DatasetCustomImagesPut)
- Package (DatasetCustomMetaGet)
- Package (DatasetCustomMetaPut)
- Package (DatasetHandler_List)
- Package (DatasetHandler_MCC_Stream_OK)
- Package (DatasetHandler_Stream_BadGroup_403)
- Package (DatasetHandler_Stream_BadSummary)
- Package (DatasetHandler_Stream_NoSuchDataset)
- Package (DatasetHandler_Stream_OK)
- Package (DetectorConfigHandler_Get)
- Package (DetectorConfigHandler_OtherMethods)
- Package (DetectorQuantConfigHandler_GetNotFound)
- Package (DetectorQuantConfigHandler_GetOK)
- Package (DetectorQuantConfigHandler_List)
- Package (DetectorQuantConfigHandler_OtherMethods)
- Package (DetectorQuantConfigHandler_VersionList)
- Package (DiffractionHandler_Delete)
- Package (DiffractionHandler_DeleteManual)
- Package (DiffractionHandler_ListAccepted)
- Package (DiffractionHandler_ListManual)
- Package (DiffractionHandler_PostManual)
- Package (DiffractionHandler_PostStatuses)
- Package (ElementSetHandler_Delete)
- Package (ElementSetHandler_Post)
- Package (ElementSetHandler_Put)
- Package (ElementSetHandler_Share)
- Package (IsABQuant)
- Package (MatchesSearch)
- Package (ParseQueryParams)
- Package (PiquantDownloadHandler_List)
- Package (PiquantDownloadHandler_OtherMethods)
- Package (PiquantHandler_GetVersion)
- Package (PiquantHandler_GetVersion_NoConfigVar)
- Package (PiquantHandler_SetVersion)
- Package (QuantHandler_BlessShared1stQuant)
- Package (QuantHandler_BlessSharedQuantV4)
- Package (QuantHandler_BlessUserQuant)
- Package (QuantHandler_Comparison_BadReqBody)
- Package (QuantHandler_Comparison_DatasetNotFound)
- Package (QuantHandler_Comparison_OK)
- Package (QuantHandler_Comparison_ROINotFound)
- Package (QuantHandler_Comparison_RemainingPointsCheckIssue)
- Package (QuantHandler_DeleteSharedJob)
- Package (QuantHandler_DeleteSharedJobNotExists)
- Package (QuantHandler_DeleteUserJob)
- Package (QuantHandler_DeleteUserJobNotExist)
- Package (QuantHandler_MultiQuantCombine_CombineIncompatible)
- Package (QuantHandler_MultiQuantCombine_DatasetLoadError)
- Package (QuantHandler_MultiQuantCombine_DuplicateNameWithInProgressQuant)
- Package (QuantHandler_MultiQuantCombine_OK)
- Package (QuantHandler_MultiQuantCombine_QuantLoadError)
- Package (QuantHandler_MultiQuantCombine_ROINotFound)
- Package (QuantHandler_MultiQuantCombine_SimpleErrors)
- Package (QuantHandler_MultiQuantCombine_SummaryOnly_OK)
- Package (QuantHandler_MultiQuantCombine_UserROILoadError)
- Package (QuantHandler_QuantFileNotFound)
- Package (QuantHandler_QuantSummaryNotFound)
- Package (QuantHandler_ShareQuant)
- Package (QuantHandler_Stream_404)
- Package (QuantHandler_Stream_BadSummary)
- Package (QuantHandler_UploadErrors)
- Package (QuantHandler_UploadOK)
- Package (QuantHandler_ZStackLoad)
- Package (QuantHandler_ZStackSave)
- Package (Quant_LastRun_Stream_OK)
- Package (Quant_Stream_OK)
- Package (RegisterExportHandlerBadJSONBody)
- Package (RegisterExportHandlerMissingColumn)
- Package (RegisterExportHandlerMissingFileName)
- Package (RegisterExportHandlerSunny)
- Package (RegisterMetricsHandlerTest)
- Package (RoiHandler_Delete)
- Package (RoiHandler_Post)
- Package (RoiHandler_Put)
- Package (RoiHandler_Share)
- Package (SpectrumAnnotationHandler_Delete)
- Package (SpectrumAnnotationHandler_Post)
- Package (SpectrumAnnotationHandler_Put)
- Package (SpectrumAnnotationHandler_Share)
- Package (TagHandler_Delete)
- Package (TagHandler_List)
- Package (TagHandler_Post)
- Package (UserManagement_AddDeleteRole)
- Package (User_edit_field_error)
- Package (Version)
- Package (ViewStateHandler_Delete)
- Package (ViewStateHandler_DeleteCollection)
- Package (ViewStateHandler_DeleteCollectionShared)
- Package (ViewStateHandler_DeleteSaved)
- Package (ViewStateHandler_DeleteSavedShared)
- Package (ViewStateHandler_Get)
- Package (ViewStateHandler_GetCollectionShared)
- Package (ViewStateHandler_GetSavedShared)
- Package (ViewStateHandler_GetSaved_ROIQuantFallbackCheck)
- Package (ViewStateHandler_List)
- Package (ViewStateHandler_ListCollections)
- Package (ViewStateHandler_List_WithReset)
- Package (ViewStateHandler_Post)
- Package (ViewStateHandler_PutCollection)
- Package (ViewStateHandler_PutSaved_Force)
- Package (ViewStateHandler_PutSaved_OverwriteAlreadyExists)
- Package (ViewStateHandler_Put_all)
- Package (ViewStateHandler_Put_analysisLayout)
- Package (ViewStateHandler_Put_binary)
- Package (ViewStateHandler_Put_chord)
- Package (ViewStateHandler_Put_contextImage)
- Package (ViewStateHandler_Put_histogram)
- Package (ViewStateHandler_Put_parallelogram)
- Package (ViewStateHandler_Put_quantification)
- Package (ViewStateHandler_Put_rgbuImages)
- Package (ViewStateHandler_Put_rgbuPlots)
- Package (ViewStateHandler_Put_roi)
- Package (ViewStateHandler_Put_roiQuantTable)
- Package (ViewStateHandler_Put_selection)
- Package (ViewStateHandler_Put_spectrum_oldway_ShouldBeRejected)
- Package (ViewStateHandler_Put_table)
- Package (ViewStateHandler_Put_ternary)
- Package (ViewStateHandler_ShareCollection)
- Package (ViewStateHandler_ShareViewState)
Constants ¶
This section is empty.
Variables ¶
This section is empty.
Functions ¶
func InitAuth0ManagementAPI ¶
func InitAuth0ManagementAPI(cfg config.APIConfig) (*management.Management, error)
InitAuth0ManagementAPI - bootstrap auth0
func MakeRouter ¶
func MakeRouter(svcs services.APIServices) apiRouter.ApiObjectRouter
Call to create a router. This registers all endpoints with the router. Each register function is responsible for defining endpoint paths, what permission is required, and what function to call to handle that endpoint
Types ¶
type AnnotationLookup ¶
type AnnotationLookup map[string]SpectrumAnnotationLine
type AnnotationPoint ¶
type ByAtomicNumber ¶
type ByAtomicNumber []elementLines
ByAtomicNumber Atomic Numbering
func (ByAtomicNumber) Len ¶
func (a ByAtomicNumber) Len() int
func (ByAtomicNumber) Less ¶
func (a ByAtomicNumber) Less(i, j int) bool
func (ByAtomicNumber) Swap ¶
func (a ByAtomicNumber) Swap(i, j int)
type ByReferencedID ¶
type ByReferencedID []referencedIDItem
ByReferencedID To sort referenced IDs by ID field
func (ByReferencedID) Len ¶
func (a ByReferencedID) Len() int
func (ByReferencedID) Less ¶
func (a ByReferencedID) Less(i, j int) bool
func (ByReferencedID) Swap ¶
func (a ByReferencedID) Swap(i, j int)
type ChannelConfig ¶
type ChannelConfig struct {
ExpressionID string `json:"expressionID"`
RangeMin float32 `json:"rangeMin"`
RangeMax float32 `json:"rangeMax"`
// We used to store this, now only here for reading in old files (backwards compatible). PIXLISE then converts it to an ExpressionID when saving again
Element string `json:"element,omitempty"`
}
RGBMixInput - only public so we can use it embedded in dataExpression
type ComponentVersion ¶
type ComponentVersion struct {
Component string `json:"component"`
Version string `json:"version"`
BuildUnixTimeSec int32 `json:"build-unix-time-sec"`
}
ComponentVersion is getting versions of stuff in API, public because it's used in integration test
type ComponentVersionsGetResponse ¶
type ComponentVersionsGetResponse struct {
Components []ComponentVersion `json:"components"`
}
ComponentVersionsGetResponse is wrapper of above
type ElementSet ¶
type ElementSet struct {
Name string `json:"name"`
Lines []elementLines `json:"lines"`
*pixlUser.APIObjectItem
}
func (ElementSet) SetTimes ¶
func (a ElementSet) SetTimes(userID string, t int64)
type ElementSetLookup ¶
type ElementSetLookup map[string]ElementSet
type GlobalData ¶
type GlobalData struct {
GlobalContent string `json:"content"`
GlobalSubject string `json:"subject"`
}
GlobalData - JSON Data for global emails
type LoggerMiddleware ¶
type LoggerMiddleware struct {
*services.APIServices
JwtValidator api.JWTInterface
}
func (*LoggerMiddleware) Middleware ¶
func (h *LoggerMiddleware) Middleware(next http.Handler) http.Handler
type MultiQuantificationComparisonResponse ¶
type MultiQuantificationComparisonResponse struct {
RoiID string `json:"roiID"`
QuantTables []QuantTable `json:"quantTables"`
}
type QuantCombineItem ¶
type QuantCombineItem struct {
RoiID string `json:"roiID"`
QuantificationID string `json:"quantificationID"`
}
Users specify a range of ROIs, with a quant for each. Order matters, this is how they will be combined
type QuantCombineList ¶
type QuantCombineList struct {
RoiZStack []QuantCombineItem `json:"roiZStack"`
}
type QuantCombineRequest ¶
type QuantCombineRequest struct {
RoiZStack []QuantCombineItem `json:"roiZStack"`
Name string `json:"name"`
Description string `json:"description"`
SummaryOnly bool `json:"summaryOnly"`
}
type QuantCombineSummaryResponse ¶
type QuantCombineSummaryResponse struct {
Detectors []string `json:"detectors"`
WeightPercents map[string]SummaryRow `json:"weightPercents"`
}
type QuantListingResponse ¶
type QuantListingResponse struct {
Summaries []quantModel.JobSummaryItem `json:"summaries"`
BlessedQuant *quantModel.BlessFileItem `json:"blessedQuant"`
}
type QuantTable ¶
type RGBMix ¶
type RGBMix struct {
*RGBMixInput
*pixlUser.APIObjectItem
}
type RGBMixInput ¶
type RGBMixInput struct {
Name string `json:"name"`
Red ChannelConfig `json:"red"`
Green ChannelConfig `json:"green"`
Blue ChannelConfig `json:"blue"`
Tags []string `json:"tags"`
}
type RGBMixLookup ¶
type SpectrumAnnotationLine ¶
type SpectrumAnnotationLine struct {
Name string `json:"name"`
RoiID string `json:"roiID"`
EV float32 `json:"eV"`
*pixlUser.APIObjectItem
}
func (SpectrumAnnotationLine) SetTimes ¶
func (a SpectrumAnnotationLine) SetTimes(userID string, t int64)
type SummaryRow ¶
type UserDiffractionPeak ¶
type UserEditRequest ¶
type UserSubscriptions ¶
UserSubscriptions - App data type for JSON conversion
type Workspace ¶
type Workspace struct {
ViewState wholeViewState `json:"viewState"`
Name string `json:"name"`
Description string `json:"description"`
*pixlUser.APIObjectItem
}
type WorkspaceCollection ¶
type WorkspaceCollection struct {
ViewStateIDs []string `json:"viewStateIDs"`
Name string `json:"name"`
Description string `json:"description"`
// Optional - we ONLY store this for shared workspaces, but for users own collections
// the get call downloads the individual workspaces and returns this field. This way
// the UI can always expect this to exist, but API only saves it when a snapshot is
// required (sharing)
ViewStates map[string]wholeViewState `json:"viewStates"`
*pixlUser.APIObjectItem
}
func (WorkspaceCollection) SetTimes ¶
func (a WorkspaceCollection) SetTimes(userID string, t int64)
Source Files
¶
- DataExpression.go
- DataModule.go
- Dataset.go
- DatasetCustomisation.go
- Detector.go
- Diffraction.go
- ElementSet.go
- Export.go
- Logger.go
- Metrics.go
- Notifications.go
- ParamIDs.go
- Piquant.go
- PrometheusMiddleware.go
- Quantification.go
- QuantificationBless.go
- QuantificationCreate.go
- QuantificationDelete.go
- QuantificationLastRunDownload.go
- QuantificationLogDownload.go
- QuantificationMultiQuant.go
- QuantificationPublish.go
- QuantificationROICompare.go
- QuantificationRetrieve.go
- QuantificationShare.go
- QuantificationUpload.go
- QuantificationZStack.go
- RGBMix.go
- ROI.go
- SpectrumAnnotation.go
- Tags.go
- Test.go
- UserManagement.go
- Version.go
- ViewState.go
- ViewStateCollection.go
- ViewStateModel.go
- ViewStateWorkspace.go
- binchicken.go
- middlewareLogger.go
- router.go
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