taxonkit

README

TaxonKit - Cross-platform and Efficient NCBI Taxonomy Toolkit

Documents: http://bioinf.shenwei.me/taxonkit (Usage, Tutorial)

Source code: https://github.com/shenwei356/taxonkit

Latest version:

Subcommands

• list list taxon tree of given taxids
• lineage query lineage of given taxids from file/stdin
• reformat reformat lineage

Installation

Go to Download Page for more download options and changelogs.

TaxonKit is implemented in Go programming language, executable binary files for most popular operating systems are freely available in release page.

Just download compressed executable file of your operating system, and uncompress it with tar -zxvf xxx.tar.gz command or other tools.

Contact

Email me for any problem when using taxonkit. shenwei356(at)gmail.com

Create an issue to report bugs, propose new functions or ask for help.

License

MIT License