clinvar

Documentation

Index

• type Allele
• type ClinVar
  • func NewClinVar(clinvarDir string) (*ClinVar, error)
  • func (cv *ClinVar) GetVariant(dbSNPID string, proteinChange string) *Allele

Types

type Allele

type Allele struct {
	VariantID     string `json:"variantId"`
	Name          string `json:"name"`
	ClinSig       string `json:"clinSig"`
	ClinSigSimple int    `json:"clinSigSimple"`
	ProteinChange string `json:"proteinChange"`
	ReviewStatus  string `json:"reviewStatus"`
	Phenotypes    string `json:"phenotypes"`
	Chromosome    string `json:"chromosome"`
	Start         uint64 `json:"start"`
	End           uint64 `json:"end"`
}

Allele represents a variant from ClinVar

type ClinVar

type ClinVar struct {
	SNPs map[string][]Allele
	// contains filtered or unexported fields
}

func NewClinVar

func NewClinVar(clinvarDir string) (*ClinVar, error)

func (*ClinVar) GetVariant

func (cv *ClinVar) GetVariant(dbSNPID string, proteinChange string) *Allele