BUG
Bioinformatic utilities in Go
Allelespecificexp
An oversimplified method to find allele specific expression in a normalized expression table and pedigree information
Usage: allelespecificexp -exp table.tsv -group "M M M F F F 1 1 1 2 2 2 3 3 3"
M marks the column of the mother RNA expression.
F marks the column of the father RNA expression.
Numbers marks the offsprings.
Replicates should have similar group ids.
Fastagrep
Using regular expression to find fasta records
Fastasubsample
Create a smaller random subset of a fasta file
FastaSplit
Split a multifasta into small, (roughly) equal proportions. Do not split sequences.
hmm
Simple HMM framework. Right now it is just a test framework
FastqFilt
Filter fastq file by read id
RingRing
Circular RNA finding tool
AnnoGraph
Scaffolding using a GFF annotation
SimVCF
Create simulated VCF file with two parents and siblings and simulate recombination events
SimHap
Create mother and father haplotype references
SimCirc
Create simulated reads came from circular RNA sample
MisAs
Find misassemblies using soft and hard clipped long reads