genbank

Documentation

Overview

package genbank converts DNA sequence files in genbank format into a set of DNA sequences.

Index

• func GenbankContentsToAnnotatedSeq(contentsinbytes []byte) (annotated wtype.DNASequence, err error)
• func GenbankFeatureToDNASequence(file wtype.File, featurename string) (wtype.DNASequence, error)
• func GenbankToAnnotatedSeq(file wtype.File) (annotated wtype.DNASequence, err error)
• func GenbankToFeaturelessDNASequence(sequenceFile wtype.File) (wtype.DNASequence, error)

Functions

func GenbankContentsToAnnotatedSeq

func GenbankContentsToAnnotatedSeq(contentsinbytes []byte) (annotated wtype.DNASequence, err error)

parses contents of a genbank file into a DNASEquence making features from annotations

func GenbankFeatureToDNASequence

func GenbankFeatureToDNASequence(file wtype.File, featurename string) (wtype.DNASequence, error)

Parses a feature from a genbank file into a DNASequence.

func GenbankToAnnotatedSeq

func GenbankToAnnotatedSeq(file wtype.File) (annotated wtype.DNASequence, err error)

parses a genbank file into a DNASEquence making features from annotations

func GenbankToFeaturelessDNASequence

func GenbankToFeaturelessDNASequence(sequenceFile wtype.File) (wtype.DNASequence, error)

Parses file of type .gb to DNASequence. Features are not annotated