feature

package
v0.0.0-...-522cb6f Latest Latest
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 Go to latest Published: Oct 30, 2023 License: BSD-2-Clause Imports: 15 Imported by: 0

Documentation

Index

Constants

View Source 
const (
	FeatureService_GetFeature_FullMethodName                 = "/dictybase.feature.FeatureService/GetFeature"
	FeatureService_GetParents_FullMethodName                 = "/dictybase.feature.FeatureService/GetParents"
	FeatureService_GetChildren_FullMethodName                = "/dictybase.feature.FeatureService/GetChildren"
	FeatureService_GetReferenceFeature_FullMethodName        = "/dictybase.feature.FeatureService/GetReferenceFeature"
	FeatureService_GetReferenceFeatures_FullMethodName       = "/dictybase.feature.FeatureService/GetReferenceFeatures"
	FeatureService_GetLocatedFeatures_FullMethodName         = "/dictybase.feature.FeatureService/GetLocatedFeatures"
	FeatureService_ListFeatures_FullMethodName               = "/dictybase.feature.FeatureService/ListFeatures"
	FeatureService_CreateFeature_FullMethodName              = "/dictybase.feature.FeatureService/CreateFeature"
	FeatureService_UpdateFeature_FullMethodName              = "/dictybase.feature.FeatureService/UpdateFeature"
	FeatureService_AddParentalRelationship_FullMethodName    = "/dictybase.feature.FeatureService/AddParentalRelationship"
	FeatureService_AddChildRelationship_FullMethodName       = "/dictybase.feature.FeatureService/AddChildRelationship"
	FeatureService_AttachLocation_FullMethodName             = "/dictybase.feature.FeatureService/AttachLocation"
	FeatureService_AddSynonym_FullMethodName                 = "/dictybase.feature.FeatureService/AddSynonym"
	FeatureService_AddPublication_FullMethodName             = "/dictybase.feature.FeatureService/AddPublication"
	FeatureService_SetPrevFeatureHistory_FullMethodName      = "/dictybase.feature.FeatureService/SetPrevFeatureHistory"
	FeatureService_SetNextFeatureHistory_FullMethodName      = "/dictybase.feature.FeatureService/SetNextFeatureHistory"
	FeatureService_AddDbxref_FullMethodName                  = "/dictybase.feature.FeatureService/AddDbxref"
	FeatureService_CreateOrganism_FullMethodName             = "/dictybase.feature.FeatureService/CreateOrganism"
	FeatureService_DeleteFeature_FullMethodName              = "/dictybase.feature.FeatureService/DeleteFeature"
	FeatureService_DeleteParentalRelationship_FullMethodName = "/dictybase.feature.FeatureService/DeleteParentalRelationship"
	FeatureService_DeleteChildRelationship_FullMethodName    = "/dictybase.feature.FeatureService/DeleteChildRelationship"
	FeatureService_DetachLocation_FullMethodName             = "/dictybase.feature.FeatureService/DetachLocation"
	FeatureService_DeleteSynonym_FullMethodName              = "/dictybase.feature.FeatureService/DeleteSynonym"
	FeatureService_DeletePublication_FullMethodName          = "/dictybase.feature.FeatureService/DeletePublication"
	FeatureService_RemovePrevFeatureHistory_FullMethodName   = "/dictybase.feature.FeatureService/RemovePrevFeatureHistory"
	FeatureService_RemoveNextFeatureHistory_FullMethodName   = "/dictybase.feature.FeatureService/RemoveNextFeatureHistory"
	FeatureService_DeleteDbxref_FullMethodName               = "/dictybase.feature.FeatureService/DeleteDbxref"
)

Variables

View Source 
var FeatureService_ServiceDesc = grpc.ServiceDesc{
	ServiceName: "dictybase.feature.FeatureService",
	HandlerType: (*FeatureServiceServer)(nil),
	Methods: []grpc.MethodDesc{
		{
			MethodName: "GetFeature",
			Handler:    _FeatureService_GetFeature_Handler,
		},
		{
			MethodName: "GetParents",
			Handler:    _FeatureService_GetParents_Handler,
		},
		{
			MethodName: "GetChildren",
			Handler:    _FeatureService_GetChildren_Handler,
		},
		{
			MethodName: "GetReferenceFeature",
			Handler:    _FeatureService_GetReferenceFeature_Handler,
		},
		{
			MethodName: "GetReferenceFeatures",
			Handler:    _FeatureService_GetReferenceFeatures_Handler,
		},
		{
			MethodName: "GetLocatedFeatures",
			Handler:    _FeatureService_GetLocatedFeatures_Handler,
		},
		{
			MethodName: "ListFeatures",
			Handler:    _FeatureService_ListFeatures_Handler,
		},
		{
			MethodName: "CreateFeature",
			Handler:    _FeatureService_CreateFeature_Handler,
		},
		{
			MethodName: "UpdateFeature",
			Handler:    _FeatureService_UpdateFeature_Handler,
		},
		{
			MethodName: "AddParentalRelationship",
			Handler:    _FeatureService_AddParentalRelationship_Handler,
		},
		{
			MethodName: "AddChildRelationship",
			Handler:    _FeatureService_AddChildRelationship_Handler,
		},
		{
			MethodName: "AttachLocation",
			Handler:    _FeatureService_AttachLocation_Handler,
		},
		{
			MethodName: "AddSynonym",
			Handler:    _FeatureService_AddSynonym_Handler,
		},
		{
			MethodName: "AddPublication",
			Handler:    _FeatureService_AddPublication_Handler,
		},
		{
			MethodName: "SetPrevFeatureHistory",
			Handler:    _FeatureService_SetPrevFeatureHistory_Handler,
		},
		{
			MethodName: "SetNextFeatureHistory",
			Handler:    _FeatureService_SetNextFeatureHistory_Handler,
		},
		{
			MethodName: "AddDbxref",
			Handler:    _FeatureService_AddDbxref_Handler,
		},
		{
			MethodName: "CreateOrganism",
			Handler:    _FeatureService_CreateOrganism_Handler,
		},
		{
			MethodName: "DeleteFeature",
			Handler:    _FeatureService_DeleteFeature_Handler,
		},
		{
			MethodName: "DeleteParentalRelationship",
			Handler:    _FeatureService_DeleteParentalRelationship_Handler,
		},
		{
			MethodName: "DeleteChildRelationship",
			Handler:    _FeatureService_DeleteChildRelationship_Handler,
		},
		{
			MethodName: "DetachLocation",
			Handler:    _FeatureService_DetachLocation_Handler,
		},
		{
			MethodName: "DeleteSynonym",
			Handler:    _FeatureService_DeleteSynonym_Handler,
		},
		{
			MethodName: "DeletePublication",
			Handler:    _FeatureService_DeletePublication_Handler,
		},
		{
			MethodName: "RemovePrevFeatureHistory",
			Handler:    _FeatureService_RemovePrevFeatureHistory_Handler,
		},
		{
			MethodName: "RemoveNextFeatureHistory",
			Handler:    _FeatureService_RemoveNextFeatureHistory_Handler,
		},
		{
			MethodName: "DeleteDbxref",
			Handler:    _FeatureService_DeleteDbxref_Handler,
		},
	},
	Streams:  []grpc.StreamDesc{},
	Metadata: "dictybase/feature/feature.proto",
}

FeatureService_ServiceDesc is the grpc.ServiceDesc for FeatureService service. It's only intended for direct use with grpc.RegisterService, and not to be introspected or modified (even as a copy)

View Source 
var File_dictybase_feature_feature_proto protoreflect.FileDescriptor

Functions

func RegisterFeatureServiceServer 

func RegisterFeatureServiceServer(s grpc.ServiceRegistrar, srv FeatureServiceServer)

Types

type Dbxref 

type Dbxref struct {

	// Identifier
	DbxrefId string `protobuf:"bytes,1,opt,name=dbxref_id,json=dbxrefId,proto3" json:"dbxref_id,omitempty"`
	Version  int64  `protobuf:"varint,2,opt,name=version,proto3" json:"version,omitempty"`
	// Source database
	Database string `protobuf:"bytes,3,opt,name=database,proto3" json:"database,omitempty"`
	// contains filtered or unexported fields
}

An identifier typically from a bioinformatics database(NCBI,Uniprot,Ensembl etc.)

func (*Dbxref) Descriptor deprecated 

func (*Dbxref) Descriptor() ([]byte, []int)

Deprecated: Use Dbxref.ProtoReflect.Descriptor instead.

func (*Dbxref) GetDatabase 

func (x *Dbxref) GetDatabase() string

func (*Dbxref) GetDbxrefId 

func (x *Dbxref) GetDbxrefId() string

func (*Dbxref) GetVersion 

func (x *Dbxref) GetVersion() int64

func (*Dbxref) ProtoMessage 

func (*Dbxref) ProtoMessage()

func (*Dbxref) ProtoReflect 

func (x *Dbxref) ProtoReflect() protoreflect.Message

func (*Dbxref) Reset 

func (x *Dbxref) Reset()

func (*Dbxref) String 

func (x *Dbxref) String() string

func (*Dbxref) Validate 

func (this *Dbxref) Validate() error

type Feature 

type Feature struct {
	Data *FeatureData `protobuf:"bytes,1,opt,name=data,proto3" json:"data,omitempty"`
	// contains filtered or unexported fields
}

Definition of a biological entity

func (*Feature) Descriptor deprecated 

func (*Feature) Descriptor() ([]byte, []int)

Deprecated: Use Feature.ProtoReflect.Descriptor instead.

func (*Feature) GetData 

func (x *Feature) GetData() *FeatureData

func (*Feature) ProtoMessage 

func (*Feature) ProtoMessage()

func (*Feature) ProtoReflect 

func (x *Feature) ProtoReflect() protoreflect.Message

func (*Feature) Reset 

func (x *Feature) Reset()

func (*Feature) String 

func (x *Feature) String() string

func (*Feature) Validate 

func (this *Feature) Validate() error

type FeatureAttributes 

type FeatureAttributes struct {

	// Short human readable textual name
	Name string `protobuf:"bytes,1,opt,name=name,proto3" json:"name,omitempty"`
	// Identifier of the user who created the feature
	CreatedBy int64 `protobuf:"varint,2,opt,name=created_by,json=createdBy,proto3" json:"created_by,omitempty"`
	// Identifier of the user who updated the feature
	UpdatedBy int64 `protobuf:"varint,3,opt,name=updated_by,json=updatedBy,proto3" json:"updated_by,omitempty"`
	// Timestamp for creation and update
	CreatedAt *timestamppb.Timestamp `protobuf:"bytes,4,opt,name=created_at,json=createdAt,proto3" json:"created_at,omitempty"`
	UpdatedAt *timestamppb.Timestamp `protobuf:"bytes,5,opt,name=updated_at,json=updatedAt,proto3" json:"updated_at,omitempty"`
	Organism  *Organism              `protobuf:"bytes,6,opt,name=organism,proto3" json:"organism,omitempty"`
	// Toggle the obsolete status
	IsObsolete bool `protobuf:"varint,7,opt,name=is_obsolete,json=isObsolete,proto3" json:"is_obsolete,omitempty"`
	// List of biological parent features
	Parents []*FeatureRelationship `protobuf:"bytes,8,rep,name=parents,proto3" json:"parents,omitempty"`
	// List of biological children feature
	Children []*FeatureRelationship `protobuf:"bytes,9,rep,name=children,proto3" json:"children,omitempty"`
	// List of feature locations in the reference backend
	Location []*FeatureLocation `protobuf:"bytes,10,rep,name=location,proto3" json:"location,omitempty"`
	// Alternate list of names
	Synonyms     []string       `protobuf:"bytes,11,rep,name=synonyms,proto3" json:"synonyms,omitempty"`
	Publications []*Publication `protobuf:"bytes,12,rep,name=publications,proto3" json:"publications,omitempty"`
	// Indicates if the feature is generated(annotated) from the
	// result of an automated analysis
	IsAnalysis bool `protobuf:"varint,13,opt,name=is_analysis,json=isAnalysis,proto3" json:"is_analysis,omitempty"`
	// Version of this feature, it increase by 1 for the replacement
	Version int64 `protobuf:"varint,14,opt,name=version,proto3" json:"version,omitempty"`
	// Earlier instance of the feature that this one has replaced
	Dbxrefs []*Dbxref `protobuf:"bytes,15,rep,name=dbxrefs,proto3" json:"dbxrefs,omitempty"`
	// contains filtered or unexported fields
}

Definition of various feature fields

func (*FeatureAttributes) Descriptor deprecated 

func (*FeatureAttributes) Descriptor() ([]byte, []int)

Deprecated: Use FeatureAttributes.ProtoReflect.Descriptor instead.

func (*FeatureAttributes) GetChildren 

func (x *FeatureAttributes) GetChildren() []*FeatureRelationship

func (*FeatureAttributes) GetCreatedAt 

func (x *FeatureAttributes) GetCreatedAt() *timestamppb.Timestamp

func (*FeatureAttributes) GetCreatedBy 

func (x *FeatureAttributes) GetCreatedBy() int64

func (*FeatureAttributes) GetDbxrefs 

func (x *FeatureAttributes) GetDbxrefs() []*Dbxref

func (*FeatureAttributes) GetIsAnalysis 

func (x *FeatureAttributes) GetIsAnalysis() bool

func (*FeatureAttributes) GetIsObsolete 

func (x *FeatureAttributes) GetIsObsolete() bool

func (*FeatureAttributes) GetLocation 

func (x *FeatureAttributes) GetLocation() []*FeatureLocation

func (*FeatureAttributes) GetName 

func (x *FeatureAttributes) GetName() string

func (*FeatureAttributes) GetOrganism 

func (x *FeatureAttributes) GetOrganism() *Organism

func (*FeatureAttributes) GetParents 

func (x *FeatureAttributes) GetParents() []*FeatureRelationship

func (*FeatureAttributes) GetPublications 

func (x *FeatureAttributes) GetPublications() []*Publication

func (*FeatureAttributes) GetSynonyms 

func (x *FeatureAttributes) GetSynonyms() []string

func (*FeatureAttributes) GetUpdatedAt 

func (x *FeatureAttributes) GetUpdatedAt() *timestamppb.Timestamp

func (*FeatureAttributes) GetUpdatedBy 

func (x *FeatureAttributes) GetUpdatedBy() int64

func (*FeatureAttributes) GetVersion 

func (x *FeatureAttributes) GetVersion() int64

func (*FeatureAttributes) ProtoMessage 

func (*FeatureAttributes) ProtoMessage()

func (*FeatureAttributes) ProtoReflect 

func (x *FeatureAttributes) ProtoReflect() protoreflect.Message

func (*FeatureAttributes) Reset 

func (x *FeatureAttributes) Reset()

func (*FeatureAttributes) String 

func (x *FeatureAttributes) String() string

func (*FeatureAttributes) Validate 

func (this *FeatureAttributes) Validate() error

type FeatureCollection 

type FeatureCollection struct {
	Data []*FeatureData `protobuf:"bytes,1,rep,name=data,proto3" json:"data,omitempty"`
	// contains filtered or unexported fields
}

List of features

func (*FeatureCollection) Descriptor deprecated 

func (*FeatureCollection) Descriptor() ([]byte, []int)

Deprecated: Use FeatureCollection.ProtoReflect.Descriptor instead.

func (*FeatureCollection) GetData 

func (x *FeatureCollection) GetData() []*FeatureData

func (*FeatureCollection) ProtoMessage 

func (*FeatureCollection) ProtoMessage()

func (*FeatureCollection) ProtoReflect 

func (x *FeatureCollection) ProtoReflect() protoreflect.Message

func (*FeatureCollection) Reset 

func (x *FeatureCollection) Reset()

func (*FeatureCollection) String 

func (x *FeatureCollection) String() string

func (*FeatureCollection) Validate 

func (this *FeatureCollection) Validate() error

type FeatureConnection 

type FeatureConnection struct {
	FeatureId    string               `protobuf:"bytes,1,opt,name=feature_id,json=featureId,proto3" json:"feature_id,omitempty"`
	Relationship *FeatureRelationship `protobuf:"bytes,2,opt,name=relationship,proto3" json:"relationship,omitempty"`
	// contains filtered or unexported fields
}

Definition for connecting two biologically related(parent or children) features

func (*FeatureConnection) Descriptor deprecated 

func (*FeatureConnection) Descriptor() ([]byte, []int)

Deprecated: Use FeatureConnection.ProtoReflect.Descriptor instead.

func (*FeatureConnection) GetFeatureId 

func (x *FeatureConnection) GetFeatureId() string

func (*FeatureConnection) GetRelationship 

func (x *FeatureConnection) GetRelationship() *FeatureRelationship

func (*FeatureConnection) ProtoMessage 

func (*FeatureConnection) ProtoMessage()

func (*FeatureConnection) ProtoReflect 

func (x *FeatureConnection) ProtoReflect() protoreflect.Message

func (*FeatureConnection) Reset 

func (x *FeatureConnection) Reset()

func (*FeatureConnection) String 

func (x *FeatureConnection) String() string

func (*FeatureConnection) Validate 

func (this *FeatureConnection) Validate() error

type FeatureData 

type FeatureData struct {

	// The biological type of feature, generally a sequence ontology term
	Type string `protobuf:"bytes,1,opt,name=type,proto3" json:"type,omitempty"`
	// Unique id
	Id         string             `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
	Attributes *FeatureAttributes `protobuf:"bytes,3,opt,name=attributes,proto3" json:"attributes,omitempty"`
	// contains filtered or unexported fields
}

func (*FeatureData) Descriptor deprecated 

func (*FeatureData) Descriptor() ([]byte, []int)

Deprecated: Use FeatureData.ProtoReflect.Descriptor instead.

func (*FeatureData) GetAttributes 

func (x *FeatureData) GetAttributes() *FeatureAttributes

func (*FeatureData) GetId 

func (x *FeatureData) GetId() string

func (*FeatureData) GetType 

func (x *FeatureData) GetType() string

func (*FeatureData) ProtoMessage 

func (*FeatureData) ProtoMessage()

func (*FeatureData) ProtoReflect 

func (x *FeatureData) ProtoReflect() protoreflect.Message

func (*FeatureData) Reset 

func (x *FeatureData) Reset()

func (*FeatureData) String 

func (x *FeatureData) String() string

func (*FeatureData) Validate 

func (this *FeatureData) Validate() error

type FeatureDbxref 

type FeatureDbxref struct {
	FeatureId string  `protobuf:"bytes,1,opt,name=feature_id,json=featureId,proto3" json:"feature_id,omitempty"`
	Dbxref    *Dbxref `protobuf:"bytes,2,opt,name=dbxref,proto3" json:"dbxref,omitempty"`
	// contains filtered or unexported fields
}

Definition for managing dbxref with a feature

func (*FeatureDbxref) Descriptor deprecated 

func (*FeatureDbxref) Descriptor() ([]byte, []int)

Deprecated: Use FeatureDbxref.ProtoReflect.Descriptor instead.

func (*FeatureDbxref) GetDbxref 

func (x *FeatureDbxref) GetDbxref() *Dbxref

func (*FeatureDbxref) GetFeatureId 

func (x *FeatureDbxref) GetFeatureId() string

func (*FeatureDbxref) ProtoMessage 

func (*FeatureDbxref) ProtoMessage()

func (*FeatureDbxref) ProtoReflect 

func (x *FeatureDbxref) ProtoReflect() protoreflect.Message

func (*FeatureDbxref) Reset 

func (x *FeatureDbxref) Reset()

func (*FeatureDbxref) String 

func (x *FeatureDbxref) String() string

func (*FeatureDbxref) Validate 

func (this *FeatureDbxref) Validate() error

type FeatureHistory 

type FeatureHistory struct {
	FeatureId     string `protobuf:"bytes,1,opt,name=feature_id,json=featureId,proto3" json:"feature_id,omitempty"`
	LinkedFeature string `protobuf:"bytes,2,opt,name=linked_feature,json=linkedFeature,proto3" json:"linked_feature,omitempty"`
	// contains filtered or unexported fields
}

Definition for managing a previous or next feature in the feature history

func (*FeatureHistory) Descriptor deprecated 

func (*FeatureHistory) Descriptor() ([]byte, []int)

Deprecated: Use FeatureHistory.ProtoReflect.Descriptor instead.

func (*FeatureHistory) GetFeatureId 

func (x *FeatureHistory) GetFeatureId() string

func (*FeatureHistory) GetLinkedFeature 

func (x *FeatureHistory) GetLinkedFeature() string

func (*FeatureHistory) ProtoMessage 

func (*FeatureHistory) ProtoMessage()

func (*FeatureHistory) ProtoReflect 

func (x *FeatureHistory) ProtoReflect() protoreflect.Message

func (*FeatureHistory) Reset 

func (x *FeatureHistory) Reset()

func (*FeatureHistory) String 

func (x *FeatureHistory) String() string

func (*FeatureHistory) Validate 

func (this *FeatureHistory) Validate() error

type FeatureId 

type FeatureId struct {

	// Unique feature identifier
	Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
	// contains filtered or unexported fields
}

func (*FeatureId) Descriptor deprecated 

func (*FeatureId) Descriptor() ([]byte, []int)

Deprecated: Use FeatureId.ProtoReflect.Descriptor instead.

func (*FeatureId) GetId 

func (x *FeatureId) GetId() string

func (*FeatureId) ProtoMessage 

func (*FeatureId) ProtoMessage()

func (*FeatureId) ProtoReflect 

func (x *FeatureId) ProtoReflect() protoreflect.Message

func (*FeatureId) Reset 

func (x *FeatureId) Reset()

func (*FeatureId) String 

func (x *FeatureId) String() string

func (*FeatureId) Validate 

func (this *FeatureId) Validate() error

type FeatureLocation 

type FeatureLocation struct {

	// Source or reference feature(identifier) which this location is relative to
	SourceFeatureId string `protobuf:"bytes,1,opt,name=source_feature_id,json=sourceFeatureId,proto3" json:"source_feature_id,omitempty"`
	// start/leftmost boundary of this location in linear range based on
	// interbase coordinates. To convert it to base-oriented system, add 1 to
	// this value.
	Start int64 `protobuf:"varint,2,opt,name=start,proto3" json:"start,omitempty"`
	// End/rightmost boundary of this location in linear range based on
	// interbase coordinates. No conversion is needed to convert it to a base
	// oriented system.
	End int64 `protobuf:"varint,3,opt,name=end,proto3" json:"end,omitempty"`
	// Orientation of this location, should be one of 0,1, or -1
	Strand int64 `protobuf:"varint,4,opt,name=strand,proto3" json:"strand,omitempty"`
	// Phase of translation with respect to source feature, should be one of 0,1,or 2.
	Phase int64 `protobuf:"varint,5,opt,name=phase,proto3" json:"phase,omitempty"`
	// Alternate residues which differ from feature residues
	Residue string `protobuf:"bytes,6,opt,name=residue,proto3" json:"residue,omitempty"`
	// Represents derivable extra location of a feature. The default value 0 is
	// used for direct location. Any other derived location gets values greater
	// than 0. For example, the position of an exon on a BAC and in a global
	// chromosomal coordinates.
	Group int64 `protobuf:"varint,7,opt,name=group,proto3" json:"group,omitempty"`
	// Used for feature with multiple locations, 0 is used as default. For
	// example, a blast HSP has two locations, one on the query and one on the
	// subject.
	Rank int64 `protobuf:"varint,8,opt,name=rank,proto3" json:"rank,omitempty"`
	// contains filtered or unexported fields
}

The location of a feature relative to another feature using space-based(interbase) coordinates.

func (*FeatureLocation) Descriptor deprecated 

func (*FeatureLocation) Descriptor() ([]byte, []int)

Deprecated: Use FeatureLocation.ProtoReflect.Descriptor instead.

func (*FeatureLocation) GetEnd 

func (x *FeatureLocation) GetEnd() int64

func (*FeatureLocation) GetGroup 

func (x *FeatureLocation) GetGroup() int64

func (*FeatureLocation) GetPhase 

func (x *FeatureLocation) GetPhase() int64

func (*FeatureLocation) GetRank 

func (x *FeatureLocation) GetRank() int64

func (*FeatureLocation) GetResidue 

func (x *FeatureLocation) GetResidue() string

func (*FeatureLocation) GetSourceFeatureId 

func (x *FeatureLocation) GetSourceFeatureId() string

func (*FeatureLocation) GetStart 

func (x *FeatureLocation) GetStart() int64

func (*FeatureLocation) GetStrand 

func (x *FeatureLocation) GetStrand() int64

func (*FeatureLocation) ProtoMessage 

func (*FeatureLocation) ProtoMessage()

func (*FeatureLocation) ProtoReflect 

func (x *FeatureLocation) ProtoReflect() protoreflect.Message

func (*FeatureLocation) Reset 

func (x *FeatureLocation) Reset()

func (*FeatureLocation) String 

func (x *FeatureLocation) String() string

func (*FeatureLocation) Validate 

func (this *FeatureLocation) Validate() error

type FeaturePublication 

type FeaturePublication struct {
	FeatureId   string              `protobuf:"bytes,1,opt,name=feature_id,json=featureId,proto3" json:"feature_id,omitempty"`
	Publication *FeaturePublication `protobuf:"bytes,2,opt,name=publication,proto3" json:"publication,omitempty"`
	// contains filtered or unexported fields
}

Definition for managing publication with a feature

func (*FeaturePublication) Descriptor deprecated 

func (*FeaturePublication) Descriptor() ([]byte, []int)

Deprecated: Use FeaturePublication.ProtoReflect.Descriptor instead.

func (*FeaturePublication) GetFeatureId 

func (x *FeaturePublication) GetFeatureId() string

func (*FeaturePublication) GetPublication 

func (x *FeaturePublication) GetPublication() *FeaturePublication

func (*FeaturePublication) ProtoMessage 

func (*FeaturePublication) ProtoMessage()

func (*FeaturePublication) ProtoReflect 

func (x *FeaturePublication) ProtoReflect() protoreflect.Message

func (*FeaturePublication) Reset 

func (x *FeaturePublication) Reset()

func (*FeaturePublication) String 

func (x *FeaturePublication) String() string

func (*FeaturePublication) Validate 

func (this *FeaturePublication) Validate() error

type FeatureRelationFilter 

type FeatureRelationFilter struct {
	FeatureId string `protobuf:"bytes,1,opt,name=feature_id,json=featureId,proto3" json:"feature_id,omitempty"`
	// Type of relationship, generally a sequence ontology term
	Relation string `protobuf:"bytes,2,opt,name=relation,proto3" json:"relation,omitempty"`
	// contains filtered or unexported fields
}

func (*FeatureRelationFilter) Descriptor deprecated 

func (*FeatureRelationFilter) Descriptor() ([]byte, []int)

Deprecated: Use FeatureRelationFilter.ProtoReflect.Descriptor instead.

func (*FeatureRelationFilter) GetFeatureId 

func (x *FeatureRelationFilter) GetFeatureId() string

func (*FeatureRelationFilter) GetRelation 

func (x *FeatureRelationFilter) GetRelation() string

func (*FeatureRelationFilter) ProtoMessage 

func (*FeatureRelationFilter) ProtoMessage()

func (*FeatureRelationFilter) ProtoReflect 

func (x *FeatureRelationFilter) ProtoReflect() protoreflect.Message

func (*FeatureRelationFilter) Reset 

func (x *FeatureRelationFilter) Reset()

func (*FeatureRelationFilter) String 

func (x *FeatureRelationFilter) String() string

func (*FeatureRelationFilter) Validate 

func (this *FeatureRelationFilter) Validate() error

type FeatureRelationship 

type FeatureRelationship struct {

	// Type of relationship, generally a sequence ontology term
	Relation string `protobuf:"bytes,1,opt,name=relation,proto3" json:"relation,omitempty"`
	// Related feature id
	FeatureId string `protobuf:"bytes,2,opt,name=feature_id,json=featureId,proto3" json:"feature_id,omitempty"`
	// contains filtered or unexported fields
}

Definition for a related feature

func (*FeatureRelationship) Descriptor deprecated 

func (*FeatureRelationship) Descriptor() ([]byte, []int)

Deprecated: Use FeatureRelationship.ProtoReflect.Descriptor instead.

func (*FeatureRelationship) GetFeatureId 

func (x *FeatureRelationship) GetFeatureId() string

func (*FeatureRelationship) GetRelation 

func (x *FeatureRelationship) GetRelation() string

func (*FeatureRelationship) ProtoMessage 

func (*FeatureRelationship) ProtoMessage()

func (*FeatureRelationship) ProtoReflect 

func (x *FeatureRelationship) ProtoReflect() protoreflect.Message

func (*FeatureRelationship) Reset 

func (x *FeatureRelationship) Reset()

func (*FeatureRelationship) String 

func (x *FeatureRelationship) String() string

func (*FeatureRelationship) Validate 

func (this *FeatureRelationship) Validate() error

type FeatureServiceClient 

type FeatureServiceClient interface {
	// Retrieves the specified feature
	GetFeature(ctx context.Context, in *FeatureId, opts ...grpc.CallOption) (*Feature, error)
	// Retrieves all the biological parents features
	GetParents(ctx context.Context, in *FeatureRelationFilter, opts ...grpc.CallOption) (*FeatureCollection, error)
	// Retrieves all biological children features
	GetChildren(ctx context.Context, in *FeatureRelationFilter, opts ...grpc.CallOption) (*FeatureCollection, error)
	// Retrieves the feature(called reference or source feature) under whose
	// coordinate system the current feature is located. By default rank 0 is
	// assumed
	GetReferenceFeature(ctx context.Context, in *ReferenceFeatureFilter, opts ...grpc.CallOption) (*Feature, error)
	// Retrieves all reference features
	GetReferenceFeatures(ctx context.Context, in *FeatureId, opts ...grpc.CallOption) (*FeatureCollection, error)
	// Retrieves all features that are located within the bounds of
	// referernce feature
	GetLocatedFeatures(ctx context.Context, in *LocatedFeatureFilter, opts ...grpc.CallOption) (*PaginatedFeatureCollection, error)
	// Retrieves all features
	ListFeatures(ctx context.Context, in *ListParameters, opts ...grpc.CallOption) (*PaginatedFeatureCollection, error)
	// Create a new feature
	CreateFeature(ctx context.Context, in *NewFeature, opts ...grpc.CallOption) (*Feature, error)
	// Update an existing feature
	UpdateFeature(ctx context.Context, in *FeatureUpdate, opts ...grpc.CallOption) (*Feature, error)
	// Add a new parental relation with an existing feature. In case of an
	// existing parent(s), it will be appended to the list.
	AddParentalRelationship(ctx context.Context, in *FeatureConnection, opts ...grpc.CallOption) (*Feature, error)
	// Add a new child relation with an existing feature. In case of an
	// existing child, it will be appended to the list.
	AddChildRelationship(ctx context.Context, in *FeatureConnection, opts ...grpc.CallOption) (*Feature, error)
	// Attach a new location entry to connect to a referernce
	// feature. In case of any existing location(s), it will be
	// appended to the list. The reference feature referred in
	// the location needs to exist.
	AttachLocation(ctx context.Context, in *NewFeatureLocation, opts ...grpc.CallOption) (*Feature, error)
	// Add a new synonym.In case of existing synonym(s),
	// it will be appended to the list
	AddSynonym(ctx context.Context, in *FeatureSynonym, opts ...grpc.CallOption) (*Feature, error)
	// Add a new publication.In case of existing publication(s),
	// it will append it to the list
	AddPublication(ctx context.Context, in *FeaturePublication, opts ...grpc.CallOption) (*Feature, error)
	// Sets the previous feature in the feature history.
	SetPrevFeatureHistory(ctx context.Context, in *FeatureHistory, opts ...grpc.CallOption) (*Feature, error)
	// Sets the next feature in the feature history.
	SetNextFeatureHistory(ctx context.Context, in *FeatureHistory, opts ...grpc.CallOption) (*Feature, error)
	// Add a new dbxref. In case of existing dbxref it will
	// append it to the list.
	AddDbxref(ctx context.Context, in *FeatureDbxref, opts ...grpc.CallOption) (*Feature, error)
	// Create a new organism entry
	CreateOrganism(ctx context.Context, in *Organism, opts ...grpc.CallOption) (*Organism, error)
	// Delete an existing feature
	DeleteFeature(ctx context.Context, in *FeatureId, opts ...grpc.CallOption) (*emptypb.Empty, error)
	// Delete a parental relationship with a feature
	DeleteParentalRelationship(ctx context.Context, in *FeatureConnection, opts ...grpc.CallOption) (*emptypb.Empty, error)
	// Delete a child relationship with a feature
	DeleteChildRelationship(ctx context.Context, in *FeatureConnection, opts ...grpc.CallOption) (*emptypb.Empty, error)
	// Detach an existing location from reference feature
	DetachLocation(ctx context.Context, in *ReferenceFeatureFilter, opts ...grpc.CallOption) (*emptypb.Empty, error)
	// Delete a synonym from the feature.
	DeleteSynonym(ctx context.Context, in *FeatureSynonym, opts ...grpc.CallOption) (*emptypb.Empty, error)
	// Delete a publication from the feature.
	DeletePublication(ctx context.Context, in *FeaturePublication, opts ...grpc.CallOption) (*emptypb.Empty, error)
	// Remove the previous feature from the feature history.
	RemovePrevFeatureHistory(ctx context.Context, in *FeatureHistory, opts ...grpc.CallOption) (*emptypb.Empty, error)
	// Remove the next feature from the feature history.
	RemoveNextFeatureHistory(ctx context.Context, in *FeatureHistory, opts ...grpc.CallOption) (*emptypb.Empty, error)
	// Delete dbxref from a feature.
	DeleteDbxref(ctx context.Context, in *FeatureDbxref, opts ...grpc.CallOption) (*emptypb.Empty, error)
}

FeatureServiceClient is the client API for FeatureService service.

For semantics around ctx use and closing/ending streaming RPCs, please refer to https://pkg.go.dev/google.golang.org/grpc/?tab=doc#ClientConn.NewStream.

func NewFeatureServiceClient 

func NewFeatureServiceClient(cc grpc.ClientConnInterface) FeatureServiceClient

type FeatureServiceServer 

type FeatureServiceServer interface {
	// Retrieves the specified feature
	GetFeature(context.Context, *FeatureId) (*Feature, error)
	// Retrieves all the biological parents features
	GetParents(context.Context, *FeatureRelationFilter) (*FeatureCollection, error)
	// Retrieves all biological children features
	GetChildren(context.Context, *FeatureRelationFilter) (*FeatureCollection, error)
	// Retrieves the feature(called reference or source feature) under whose
	// coordinate system the current feature is located. By default rank 0 is
	// assumed
	GetReferenceFeature(context.Context, *ReferenceFeatureFilter) (*Feature, error)
	// Retrieves all reference features
	GetReferenceFeatures(context.Context, *FeatureId) (*FeatureCollection, error)
	// Retrieves all features that are located within the bounds of
	// referernce feature
	GetLocatedFeatures(context.Context, *LocatedFeatureFilter) (*PaginatedFeatureCollection, error)
	// Retrieves all features
	ListFeatures(context.Context, *ListParameters) (*PaginatedFeatureCollection, error)
	// Create a new feature
	CreateFeature(context.Context, *NewFeature) (*Feature, error)
	// Update an existing feature
	UpdateFeature(context.Context, *FeatureUpdate) (*Feature, error)
	// Add a new parental relation with an existing feature. In case of an
	// existing parent(s), it will be appended to the list.
	AddParentalRelationship(context.Context, *FeatureConnection) (*Feature, error)
	// Add a new child relation with an existing feature. In case of an
	// existing child, it will be appended to the list.
	AddChildRelationship(context.Context, *FeatureConnection) (*Feature, error)
	// Attach a new location entry to connect to a referernce
	// feature. In case of any existing location(s), it will be
	// appended to the list. The reference feature referred in
	// the location needs to exist.
	AttachLocation(context.Context, *NewFeatureLocation) (*Feature, error)
	// Add a new synonym.In case of existing synonym(s),
	// it will be appended to the list
	AddSynonym(context.Context, *FeatureSynonym) (*Feature, error)
	// Add a new publication.In case of existing publication(s),
	// it will append it to the list
	AddPublication(context.Context, *FeaturePublication) (*Feature, error)
	// Sets the previous feature in the feature history.
	SetPrevFeatureHistory(context.Context, *FeatureHistory) (*Feature, error)
	// Sets the next feature in the feature history.
	SetNextFeatureHistory(context.Context, *FeatureHistory) (*Feature, error)
	// Add a new dbxref. In case of existing dbxref it will
	// append it to the list.
	AddDbxref(context.Context, *FeatureDbxref) (*Feature, error)
	// Create a new organism entry
	CreateOrganism(context.Context, *Organism) (*Organism, error)
	// Delete an existing feature
	DeleteFeature(context.Context, *FeatureId) (*emptypb.Empty, error)
	// Delete a parental relationship with a feature
	DeleteParentalRelationship(context.Context, *FeatureConnection) (*emptypb.Empty, error)
	// Delete a child relationship with a feature
	DeleteChildRelationship(context.Context, *FeatureConnection) (*emptypb.Empty, error)
	// Detach an existing location from reference feature
	DetachLocation(context.Context, *ReferenceFeatureFilter) (*emptypb.Empty, error)
	// Delete a synonym from the feature.
	DeleteSynonym(context.Context, *FeatureSynonym) (*emptypb.Empty, error)
	// Delete a publication from the feature.
	DeletePublication(context.Context, *FeaturePublication) (*emptypb.Empty, error)
	// Remove the previous feature from the feature history.
	RemovePrevFeatureHistory(context.Context, *FeatureHistory) (*emptypb.Empty, error)
	// Remove the next feature from the feature history.
	RemoveNextFeatureHistory(context.Context, *FeatureHistory) (*emptypb.Empty, error)
	// Delete dbxref from a feature.
	DeleteDbxref(context.Context, *FeatureDbxref) (*emptypb.Empty, error)
	// contains filtered or unexported methods
}

FeatureServiceServer is the server API for FeatureService service. All implementations must embed UnimplementedFeatureServiceServer for forward compatibility

type FeatureSynonym 

type FeatureSynonym struct {
	FeatureId string `protobuf:"bytes,1,opt,name=feature_id,json=featureId,proto3" json:"feature_id,omitempty"`
	Synonym   string `protobuf:"bytes,2,opt,name=synonym,proto3" json:"synonym,omitempty"`
	// contains filtered or unexported fields
}

Defintion for managing synonym of a feature

func (*FeatureSynonym) Descriptor deprecated 

func (*FeatureSynonym) Descriptor() ([]byte, []int)

Deprecated: Use FeatureSynonym.ProtoReflect.Descriptor instead.

func (*FeatureSynonym) GetFeatureId 

func (x *FeatureSynonym) GetFeatureId() string

func (*FeatureSynonym) GetSynonym 

func (x *FeatureSynonym) GetSynonym() string

func (*FeatureSynonym) ProtoMessage 

func (*FeatureSynonym) ProtoMessage()

func (*FeatureSynonym) ProtoReflect 

func (x *FeatureSynonym) ProtoReflect() protoreflect.Message

func (*FeatureSynonym) Reset 

func (x *FeatureSynonym) Reset()

func (*FeatureSynonym) String 

func (x *FeatureSynonym) String() string

func (*FeatureSynonym) Validate 

func (this *FeatureSynonym) Validate() error

type FeatureUpdate 

type FeatureUpdate struct {
	Data *FeatureUpdate_Data `protobuf:"bytes,1,opt,name=data,proto3" json:"data,omitempty"`
	// An optional mask specifying which fields to update.
	// Presence of this field allow partial updates.
	UpdateMask *fieldmaskpb.FieldMask `protobuf:"bytes,2,opt,name=update_mask,json=updateMask,proto3" json:"update_mask,omitempty"`
	// contains filtered or unexported fields
}

Definition for updating a feature

func (*FeatureUpdate) Descriptor deprecated 

func (*FeatureUpdate) Descriptor() ([]byte, []int)

Deprecated: Use FeatureUpdate.ProtoReflect.Descriptor instead.

func (*FeatureUpdate) GetData 

func (x *FeatureUpdate) GetData() *FeatureUpdate_Data

func (*FeatureUpdate) GetUpdateMask 

func (x *FeatureUpdate) GetUpdateMask() *fieldmaskpb.FieldMask

func (*FeatureUpdate) ProtoMessage 

func (*FeatureUpdate) ProtoMessage()

func (*FeatureUpdate) ProtoReflect 

func (x *FeatureUpdate) ProtoReflect() protoreflect.Message

func (*FeatureUpdate) Reset 

func (x *FeatureUpdate) Reset()

func (*FeatureUpdate) String 

func (x *FeatureUpdate) String() string

func (*FeatureUpdate) Validate 

func (this *FeatureUpdate) Validate() error

type FeatureUpdateAttributes 

type FeatureUpdateAttributes struct {

	// Short human readable textual name
	Name string `protobuf:"bytes,1,opt,name=name,proto3" json:"name,omitempty"`
	// Identifier of the user who updated the feature
	UpdatedBy int64     `protobuf:"varint,2,opt,name=updated_by,json=updatedBy,proto3" json:"updated_by,omitempty"`
	Dbxrefs   []*Dbxref `protobuf:"bytes,3,rep,name=dbxrefs,proto3" json:"dbxrefs,omitempty"`
	Organism  *Organism `protobuf:"bytes,4,opt,name=organism,proto3" json:"organism,omitempty"`
	// List of biological parent features
	Parents []*FeatureRelationship `protobuf:"bytes,5,rep,name=parents,proto3" json:"parents,omitempty"`
	// List of biological children feature
	Children []*FeatureRelationship `protobuf:"bytes,6,rep,name=children,proto3" json:"children,omitempty"`
	Location []*FeatureLocation     `protobuf:"bytes,7,rep,name=location,proto3" json:"location,omitempty"`
	// aLTERNATe list of names
	Synonyms     []string       `protobuf:"bytes,8,rep,name=synonyms,proto3" json:"synonyms,omitempty"`
	Publications []*Publication `protobuf:"bytes,9,rep,name=publications,proto3" json:"publications,omitempty"`
	// Indicates if the feature is generated(annotated) from the
	// result of an automated analysis
	IsAnalysis bool `protobuf:"varint,10,opt,name=is_analysis,json=isAnalysis,proto3" json:"is_analysis,omitempty"`
	// contains filtered or unexported fields
}

Definition of feature fields for updating a feature

func (*FeatureUpdateAttributes) Descriptor deprecated 

func (*FeatureUpdateAttributes) Descriptor() ([]byte, []int)

Deprecated: Use FeatureUpdateAttributes.ProtoReflect.Descriptor instead.

func (*FeatureUpdateAttributes) GetChildren 

func (x *FeatureUpdateAttributes) GetChildren() []*FeatureRelationship

func (*FeatureUpdateAttributes) GetDbxrefs 

func (x *FeatureUpdateAttributes) GetDbxrefs() []*Dbxref

func (*FeatureUpdateAttributes) GetIsAnalysis 

func (x *FeatureUpdateAttributes) GetIsAnalysis() bool

func (*FeatureUpdateAttributes) GetLocation 

func (x *FeatureUpdateAttributes) GetLocation() []*FeatureLocation

func (*FeatureUpdateAttributes) GetName 

func (x *FeatureUpdateAttributes) GetName() string

func (*FeatureUpdateAttributes) GetOrganism 

func (x *FeatureUpdateAttributes) GetOrganism() *Organism

func (*FeatureUpdateAttributes) GetParents 

func (x *FeatureUpdateAttributes) GetParents() []*FeatureRelationship

func (*FeatureUpdateAttributes) GetPublications 

func (x *FeatureUpdateAttributes) GetPublications() []*Publication

func (*FeatureUpdateAttributes) GetSynonyms 

func (x *FeatureUpdateAttributes) GetSynonyms() []string

func (*FeatureUpdateAttributes) GetUpdatedBy 

func (x *FeatureUpdateAttributes) GetUpdatedBy() int64

func (*FeatureUpdateAttributes) ProtoMessage 

func (*FeatureUpdateAttributes) ProtoMessage()

func (*FeatureUpdateAttributes) ProtoReflect 

func (x *FeatureUpdateAttributes) ProtoReflect() protoreflect.Message

func (*FeatureUpdateAttributes) Reset 

func (x *FeatureUpdateAttributes) Reset()

func (*FeatureUpdateAttributes) String 

func (x *FeatureUpdateAttributes) String() string

func (*FeatureUpdateAttributes) Validate 

func (this *FeatureUpdateAttributes) Validate() error

type FeatureUpdate_Data 

type FeatureUpdate_Data struct {

	// The biological type of feature, generally a sequence ontology term
	Type       string                   `protobuf:"bytes,1,opt,name=type,proto3" json:"type,omitempty"`
	Attributes *FeatureUpdateAttributes `protobuf:"bytes,2,opt,name=attributes,proto3" json:"attributes,omitempty"`
	Id         string                   `protobuf:"bytes,3,opt,name=id,proto3" json:"id,omitempty"`
	// contains filtered or unexported fields
}

func (*FeatureUpdate_Data) Descriptor deprecated 

func (*FeatureUpdate_Data) Descriptor() ([]byte, []int)

Deprecated: Use FeatureUpdate_Data.ProtoReflect.Descriptor instead.

func (*FeatureUpdate_Data) GetAttributes 

func (x *FeatureUpdate_Data) GetAttributes() *FeatureUpdateAttributes

func (*FeatureUpdate_Data) GetId 

func (x *FeatureUpdate_Data) GetId() string

func (*FeatureUpdate_Data) GetType 

func (x *FeatureUpdate_Data) GetType() string

func (*FeatureUpdate_Data) ProtoMessage 

func (*FeatureUpdate_Data) ProtoMessage()

func (*FeatureUpdate_Data) ProtoReflect 

func (x *FeatureUpdate_Data) ProtoReflect() protoreflect.Message

func (*FeatureUpdate_Data) Reset 

func (x *FeatureUpdate_Data) Reset()

func (*FeatureUpdate_Data) String 

func (x *FeatureUpdate_Data) String() string

func (*FeatureUpdate_Data) Validate 

func (this *FeatureUpdate_Data) Validate() error

type ListParameters 

type ListParameters struct {

	// A unique pointer to the next set of result in the list
	Cursor int64 `protobuf:"varint,1,opt,name=cursor,proto3" json:"cursor,omitempty"`
	// Maximum number of records that can be fetch per request
	Limit int64 `protobuf:"varint,2,opt,name=limit,proto3" json:"limit,omitempty"`
	// The `filter` field restricts the data return by the collection. To use
	// it, supply one or multiple allowed fields to filter followed
	// by a filter expression. It uses the following syntax...
	//
	//	field_name operator value
	//
	// field_name - Any one of the allowed field name that are given below.
	//
	//   - name      - feature name (string).
	//   - type      - The biological type of feature, generally a sequence ontology term (string)
	//   - species   - Organism species (string)
	//   - genus     - Organism genus (string)
	//   - strain    - Strain name of the organism (string)
	//   - taxon_id  - Taxon identifier (string)
	//   - obsolete  - Live or retired feature (bool)
	//   - analysis  - Feature as a result of analysis (bool)
	//
	// operator - Defines the type of filter match to use. It could be any of
	// the following four and all of them should be URL-encoded for http request.
	//
	//	==  Equals (URL encoding is %3D%3D)
	//	!=  Not equals
	//	~  Contains/matches substring (case insensitive)
	//	!~  Not contains substring (case insensitive)
	//	>   Greater than
	//	<   Less than
	//	=<  Less than equal to
	//	>=  Greater than equal to
	//
	// value - The value must be a string, a number or a boolean. URL-reserved
	// characters must be URL-encoded for http request.
	//
	//	filter: "name==pcA"
	//	filter: "name~scr"
	//	filter: "obsolete==true"
	//
	// Filter can be combined using OR or AND boolean logic.
	//
	//   - The OR is represented using a comma(,).
	//
	//   - The AND is represented using a semi-colon(;).
	//
	//   - AND and OR operators can be combined and AND takes precedence over OR.
	//
	//     filter: "name==pcA;obsolete==true;type=exon"
	//     filter: "name==transcription,name==gtx"
	Filter string `protobuf:"bytes,3,opt,name=filter,proto3" json:"filter,omitempty"`
	// contains filtered or unexported fields
}

ListParameters defines fields for manipulating output of PaginatedFeatureCollection

func (*ListParameters) Descriptor deprecated 

func (*ListParameters) Descriptor() ([]byte, []int)

Deprecated: Use ListParameters.ProtoReflect.Descriptor instead.

func (*ListParameters) GetCursor 

func (x *ListParameters) GetCursor() int64

func (*ListParameters) GetFilter 

func (x *ListParameters) GetFilter() string

func (*ListParameters) GetLimit 

func (x *ListParameters) GetLimit() int64

func (*ListParameters) ProtoMessage 

func (*ListParameters) ProtoMessage()

func (*ListParameters) ProtoReflect 

func (x *ListParameters) ProtoReflect() protoreflect.Message

func (*ListParameters) Reset 

func (x *ListParameters) Reset()

func (*ListParameters) String 

func (x *ListParameters) String() string

func (*ListParameters) Validate 

func (this *ListParameters) Validate() error

type LocatedFeatureFilter 

type LocatedFeatureFilter struct {

	// unique id of the reference feature
	FeatureId string `protobuf:"bytes,1,opt,name=feature_id,json=featureId,proto3" json:"feature_id,omitempty"`
	// The biological type of feature, generally a sequence ontology term.
	Type string `protobuf:"bytes,2,opt,name=type,proto3" json:"type,omitempty"`
	// The `filter` field restricts no of features in the collection by using a
	// combination of custom start and end coordinates of reference feature. To
	// use it, supply the field name followed by the filter expression. It uses
	// the following syntax...
	//
	//	field_name operator value
	//
	// field_name - Any one of the allowed field name that are given below.
	//
	//   - start - leftmost boundary of location (number).
	//   - end   - rightmost boundary of location (number).
	//
	// operator - Defines the type of filter match to use. It could be any of
	// the following and all of them should be URL-encoded for http request.
	//
	//	>   Greater than
	//	<   Less than
	//	=<  Less than equal to
	//	>=  Greater than equal to
	//
	// value - The value must be a number here. If only one of the value is
	// given, the coordinate of reference feature is for the other by default.
	// URL-reserved
	// characters must be URL-encoded for http request.
	//
	//	filter: "start>=100"
	//	filter: "end<789"
	//
	// Filter can be combined using AND boolean logic. The AND is represented
	// using a semi-colon(;).
	//
	//	filter: "start>=89;end<=7430"
	Filter string `protobuf:"bytes,3,opt,name=filter,proto3" json:"filter,omitempty"`
	// contains filtered or unexported fields
}

func (*LocatedFeatureFilter) Descriptor deprecated 

func (*LocatedFeatureFilter) Descriptor() ([]byte, []int)

Deprecated: Use LocatedFeatureFilter.ProtoReflect.Descriptor instead.

func (*LocatedFeatureFilter) GetFeatureId 

func (x *LocatedFeatureFilter) GetFeatureId() string

func (*LocatedFeatureFilter) GetFilter 

func (x *LocatedFeatureFilter) GetFilter() string

func (*LocatedFeatureFilter) GetType 

func (x *LocatedFeatureFilter) GetType() string

func (*LocatedFeatureFilter) ProtoMessage 

func (*LocatedFeatureFilter) ProtoMessage()

func (*LocatedFeatureFilter) ProtoReflect 

func (x *LocatedFeatureFilter) ProtoReflect() protoreflect.Message

func (*LocatedFeatureFilter) Reset 

func (x *LocatedFeatureFilter) Reset()

func (*LocatedFeatureFilter) String 

func (x *LocatedFeatureFilter) String() string

func (*LocatedFeatureFilter) Validate 

func (this *LocatedFeatureFilter) Validate() error

type Meta 

type Meta struct {

	// A unique pointer to the next set of result in the collection. Set the
	// cursor value parameter to the value of next_cursor to retrieve the next
	// set of collection using the same method
	NextCursor int64 `protobuf:"varint,1,opt,name=next_cursor,json=nextCursor,proto3" json:"next_cursor,omitempty"`
	// Maximum number of records that can be fetch per request
	Limit int64 `protobuf:"varint,2,opt,name=limit,proto3" json:"limit,omitempty"`
	// Total number of records in the collection.
	Total int64 `protobuf:"varint,3,opt,name=total,proto3" json:"total,omitempty"`
	// contains filtered or unexported fields
}

Metadata definition for traversing the collection

func (*Meta) Descriptor deprecated 

func (*Meta) Descriptor() ([]byte, []int)

Deprecated: Use Meta.ProtoReflect.Descriptor instead.

func (*Meta) GetLimit 

func (x *Meta) GetLimit() int64

func (*Meta) GetNextCursor 

func (x *Meta) GetNextCursor() int64

func (*Meta) GetTotal 

func (x *Meta) GetTotal() int64

func (*Meta) ProtoMessage 

func (*Meta) ProtoMessage()

func (*Meta) ProtoReflect 

func (x *Meta) ProtoReflect() protoreflect.Message

func (*Meta) Reset 

func (x *Meta) Reset()

func (*Meta) String 

func (x *Meta) String() string

func (*Meta) Validate 

func (this *Meta) Validate() error

type NewFeature 

type NewFeature struct {
	Data *NewFeature_Data `protobuf:"bytes,1,opt,name=data,proto3" json:"data,omitempty"`
	// contains filtered or unexported fields
}

Definition for creating new feature

func (*NewFeature) Descriptor deprecated 

func (*NewFeature) Descriptor() ([]byte, []int)

Deprecated: Use NewFeature.ProtoReflect.Descriptor instead.

func (*NewFeature) GetData 

func (x *NewFeature) GetData() *NewFeature_Data

func (*NewFeature) ProtoMessage 

func (*NewFeature) ProtoMessage()

func (*NewFeature) ProtoReflect 

func (x *NewFeature) ProtoReflect() protoreflect.Message

func (*NewFeature) Reset 

func (x *NewFeature) Reset()

func (*NewFeature) String 

func (x *NewFeature) String() string

func (*NewFeature) Validate 

func (this *NewFeature) Validate() error

type NewFeatureAttributes 

type NewFeatureAttributes struct {

	// Short human readable textual name
	Name string `protobuf:"bytes,1,opt,name=name,proto3" json:"name,omitempty"`
	// Identifier of the user who created the feature
	CreatedBy int64 `protobuf:"varint,2,opt,name=created_by,json=createdBy,proto3" json:"created_by,omitempty"`
	// Identifier of the user who updated the feature
	UpdatedBy int64     `protobuf:"varint,3,opt,name=updated_by,json=updatedBy,proto3" json:"updated_by,omitempty"`
	Dbxrefs   []*Dbxref `protobuf:"bytes,4,rep,name=dbxrefs,proto3" json:"dbxrefs,omitempty"`
	Organism  *Organism `protobuf:"bytes,5,opt,name=organism,proto3" json:"organism,omitempty"`
	// Toggle the obsolete status
	IsObsolete bool `protobuf:"varint,6,opt,name=is_obsolete,json=isObsolete,proto3" json:"is_obsolete,omitempty"`
	// List of biological parent features
	Parents []*FeatureRelationship `protobuf:"bytes,7,rep,name=parents,proto3" json:"parents,omitempty"`
	// List of biological children feature
	Children []*FeatureRelationship `protobuf:"bytes,8,rep,name=children,proto3" json:"children,omitempty"`
	Location []*FeatureLocation     `protobuf:"bytes,9,rep,name=location,proto3" json:"location,omitempty"`
	// Alternate list of names
	Synonyms     []string       `protobuf:"bytes,10,rep,name=synonyms,proto3" json:"synonyms,omitempty"`
	Publications []*Publication `protobuf:"bytes,11,rep,name=publications,proto3" json:"publications,omitempty"`
	// Indicates if the feature is generated(annotated) from the
	// result of an automated analysis
	IsAnalysis bool `protobuf:"varint,12,opt,name=is_analysis,json=isAnalysis,proto3" json:"is_analysis,omitempty"`
	// Version of this feature, it increase by 1 for the replacement
	Version int64 `protobuf:"varint,13,opt,name=version,proto3" json:"version,omitempty"`
	// contains filtered or unexported fields
}

Definition of various feature fields for creating new feature

func (*NewFeatureAttributes) Descriptor deprecated 

func (*NewFeatureAttributes) Descriptor() ([]byte, []int)

Deprecated: Use NewFeatureAttributes.ProtoReflect.Descriptor instead.

func (*NewFeatureAttributes) GetChildren 

func (x *NewFeatureAttributes) GetChildren() []*FeatureRelationship

func (*NewFeatureAttributes) GetCreatedBy 

func (x *NewFeatureAttributes) GetCreatedBy() int64

func (*NewFeatureAttributes) GetDbxrefs 

func (x *NewFeatureAttributes) GetDbxrefs() []*Dbxref

func (*NewFeatureAttributes) GetIsAnalysis 

func (x *NewFeatureAttributes) GetIsAnalysis() bool

func (*NewFeatureAttributes) GetIsObsolete 

func (x *NewFeatureAttributes) GetIsObsolete() bool

func (*NewFeatureAttributes) GetLocation 

func (x *NewFeatureAttributes) GetLocation() []*FeatureLocation

func (*NewFeatureAttributes) GetName 

func (x *NewFeatureAttributes) GetName() string

func (*NewFeatureAttributes) GetOrganism 

func (x *NewFeatureAttributes) GetOrganism() *Organism

func (*NewFeatureAttributes) GetParents 

func (x *NewFeatureAttributes) GetParents() []*FeatureRelationship

func (*NewFeatureAttributes) GetPublications 

func (x *NewFeatureAttributes) GetPublications() []*Publication

func (*NewFeatureAttributes) GetSynonyms 

func (x *NewFeatureAttributes) GetSynonyms() []string

func (*NewFeatureAttributes) GetUpdatedBy 

func (x *NewFeatureAttributes) GetUpdatedBy() int64

func (*NewFeatureAttributes) GetVersion 

func (x *NewFeatureAttributes) GetVersion() int64

func (*NewFeatureAttributes) ProtoMessage 

func (*NewFeatureAttributes) ProtoMessage()

func (*NewFeatureAttributes) ProtoReflect 

func (x *NewFeatureAttributes) ProtoReflect() protoreflect.Message

func (*NewFeatureAttributes) Reset 

func (x *NewFeatureAttributes) Reset()

func (*NewFeatureAttributes) String 

func (x *NewFeatureAttributes) String() string

func (*NewFeatureAttributes) Validate 

func (this *NewFeatureAttributes) Validate() error

type NewFeatureLocation 

type NewFeatureLocation struct {
	FeatureId string           `protobuf:"bytes,1,opt,name=feature_id,json=featureId,proto3" json:"feature_id,omitempty"`
	Location  *FeatureLocation `protobuf:"bytes,2,opt,name=location,proto3" json:"location,omitempty"`
	// contains filtered or unexported fields
}

Definition for attaching a new location to a feature

func (*NewFeatureLocation) Descriptor deprecated 

func (*NewFeatureLocation) Descriptor() ([]byte, []int)

Deprecated: Use NewFeatureLocation.ProtoReflect.Descriptor instead.

func (*NewFeatureLocation) GetFeatureId 

func (x *NewFeatureLocation) GetFeatureId() string

func (*NewFeatureLocation) GetLocation 

func (x *NewFeatureLocation) GetLocation() *FeatureLocation

func (*NewFeatureLocation) ProtoMessage 

func (*NewFeatureLocation) ProtoMessage()

func (*NewFeatureLocation) ProtoReflect 

func (x *NewFeatureLocation) ProtoReflect() protoreflect.Message

func (*NewFeatureLocation) Reset 

func (x *NewFeatureLocation) Reset()

func (*NewFeatureLocation) String 

func (x *NewFeatureLocation) String() string

func (*NewFeatureLocation) Validate 

func (this *NewFeatureLocation) Validate() error

type NewFeature_Data 

type NewFeature_Data struct {

	// The biological type of feature, generally a sequence ontology term
	Type       string                `protobuf:"bytes,1,opt,name=type,proto3" json:"type,omitempty"`
	Attributes *NewFeatureAttributes `protobuf:"bytes,2,opt,name=attributes,proto3" json:"attributes,omitempty"`
	// contains filtered or unexported fields
}

func (*NewFeature_Data) Descriptor deprecated 

func (*NewFeature_Data) Descriptor() ([]byte, []int)

Deprecated: Use NewFeature_Data.ProtoReflect.Descriptor instead.

func (*NewFeature_Data) GetAttributes 

func (x *NewFeature_Data) GetAttributes() *NewFeatureAttributes

func (*NewFeature_Data) GetType 

func (x *NewFeature_Data) GetType() string

func (*NewFeature_Data) ProtoMessage 

func (*NewFeature_Data) ProtoMessage()

func (*NewFeature_Data) ProtoReflect 

func (x *NewFeature_Data) ProtoReflect() protoreflect.Message

func (*NewFeature_Data) Reset 

func (x *NewFeature_Data) Reset()

func (*NewFeature_Data) String 

func (x *NewFeature_Data) String() string

func (*NewFeature_Data) Validate 

func (this *NewFeature_Data) Validate() error

type Organism 

type Organism struct {

	// Taxon identifier
	TaxonId string `protobuf:"bytes,1,opt,name=taxon_id,json=taxonId,proto3" json:"taxon_id,omitempty"`
	// Organism genus
	Genus string `protobuf:"bytes,2,opt,name=genus,proto3" json:"genus,omitempty"`
	// Organism species
	Species    string `protobuf:"bytes,3,opt,name=species,proto3" json:"species,omitempty"`
	CommonName string `protobuf:"bytes,4,opt,name=common_name,json=commonName,proto3" json:"common_name,omitempty"`
	// Taxonomic rank
	Rank string `protobuf:"bytes,5,opt,name=rank,proto3" json:"rank,omitempty"`
	// Scientific name
	ScientificName string `protobuf:"bytes,6,opt,name=scientific_name,json=scientificName,proto3" json:"scientific_name,omitempty"`
	// Strain name
	Strain string `protobuf:"bytes,7,opt,name=strain,proto3" json:"strain,omitempty"`
	// contains filtered or unexported fields
}

Defintion of an organism entry

func (*Organism) Descriptor deprecated 

func (*Organism) Descriptor() ([]byte, []int)

Deprecated: Use Organism.ProtoReflect.Descriptor instead.

func (*Organism) GetCommonName 

func (x *Organism) GetCommonName() string

func (*Organism) GetGenus 

func (x *Organism) GetGenus() string

func (*Organism) GetRank 

func (x *Organism) GetRank() string

func (*Organism) GetScientificName 

func (x *Organism) GetScientificName() string

func (*Organism) GetSpecies 

func (x *Organism) GetSpecies() string

func (*Organism) GetStrain 

func (x *Organism) GetStrain() string

func (*Organism) GetTaxonId 

func (x *Organism) GetTaxonId() string

func (*Organism) ProtoMessage 

func (*Organism) ProtoMessage()

func (*Organism) ProtoReflect 

func (x *Organism) ProtoReflect() protoreflect.Message

func (*Organism) Reset 

func (x *Organism) Reset()

func (*Organism) String 

func (x *Organism) String() string

func (*Organism) Validate 

func (this *Organism) Validate() error

type PaginatedFeatureCollection 

type PaginatedFeatureCollection struct {
	Data []*FeatureData `protobuf:"bytes,1,rep,name=data,proto3" json:"data,omitempty"`
	Meta *Meta          `protobuf:"bytes,2,opt,name=meta,proto3" json:"meta,omitempty"`
	// contains filtered or unexported fields
}

List of features with pagination

func (*PaginatedFeatureCollection) Descriptor deprecated 

func (*PaginatedFeatureCollection) Descriptor() ([]byte, []int)

Deprecated: Use PaginatedFeatureCollection.ProtoReflect.Descriptor instead.

func (*PaginatedFeatureCollection) GetData 

func (x *PaginatedFeatureCollection) GetData() []*FeatureData

func (*PaginatedFeatureCollection) GetMeta 

func (x *PaginatedFeatureCollection) GetMeta() *Meta

func (*PaginatedFeatureCollection) ProtoMessage 

func (*PaginatedFeatureCollection) ProtoMessage()

func (*PaginatedFeatureCollection) ProtoReflect 

func (x *PaginatedFeatureCollection) ProtoReflect() protoreflect.Message

func (*PaginatedFeatureCollection) Reset 

func (x *PaginatedFeatureCollection) Reset()

func (*PaginatedFeatureCollection) String 

func (x *PaginatedFeatureCollection) String() string

func (*PaginatedFeatureCollection) Validate 

func (this *PaginatedFeatureCollection) Validate() error

type Publication 

type Publication struct {

	// An identifier that refers to a publication
	PublicationId string `protobuf:"bytes,1,opt,name=publication_id,json=publicationId,proto3" json:"publication_id,omitempty"`
	// Source of this publication identifier
	Source string `protobuf:"bytes,2,opt,name=source,proto3" json:"source,omitempty"`
	// contains filtered or unexported fields
}

Container for linked publications

func (*Publication) Descriptor deprecated 

func (*Publication) Descriptor() ([]byte, []int)

Deprecated: Use Publication.ProtoReflect.Descriptor instead.

func (*Publication) GetPublicationId 

func (x *Publication) GetPublicationId() string

func (*Publication) GetSource 

func (x *Publication) GetSource() string

func (*Publication) ProtoMessage 

func (*Publication) ProtoMessage()

func (*Publication) ProtoReflect 

func (x *Publication) ProtoReflect() protoreflect.Message

func (*Publication) Reset 

func (x *Publication) Reset()

func (*Publication) String 

func (x *Publication) String() string

func (*Publication) Validate 

func (this *Publication) Validate() error

type ReferenceFeatureFilter 

type ReferenceFeatureFilter struct {
	FeatureId string `protobuf:"bytes,1,opt,name=feature_id,json=featureId,proto3" json:"feature_id,omitempty"`
	// Used for feature with multiple locations, 0 is used as default.
	Rank int64 `protobuf:"varint,2,opt,name=rank,proto3" json:"rank,omitempty"`
	// contains filtered or unexported fields
}

func (*ReferenceFeatureFilter) Descriptor deprecated 

func (*ReferenceFeatureFilter) Descriptor() ([]byte, []int)

Deprecated: Use ReferenceFeatureFilter.ProtoReflect.Descriptor instead.

func (*ReferenceFeatureFilter) GetFeatureId 

func (x *ReferenceFeatureFilter) GetFeatureId() string

func (*ReferenceFeatureFilter) GetRank 

func (x *ReferenceFeatureFilter) GetRank() int64

func (*ReferenceFeatureFilter) ProtoMessage 

func (*ReferenceFeatureFilter) ProtoMessage()

func (*ReferenceFeatureFilter) ProtoReflect 

func (x *ReferenceFeatureFilter) ProtoReflect() protoreflect.Message

func (*ReferenceFeatureFilter) Reset 

func (x *ReferenceFeatureFilter) Reset()

func (*ReferenceFeatureFilter) String 

func (x *ReferenceFeatureFilter) String() string

func (*ReferenceFeatureFilter) Validate 

func (this *ReferenceFeatureFilter) Validate() error

type UnimplementedFeatureServiceServer 

type UnimplementedFeatureServiceServer struct {
}

UnimplementedFeatureServiceServer must be embedded to have forward compatible implementations.

func (UnimplementedFeatureServiceServer) AddChildRelationship 

func (UnimplementedFeatureServiceServer) AddChildRelationship(context.Context, *FeatureConnection) (*Feature, error)

func (UnimplementedFeatureServiceServer) AddDbxref 

func (UnimplementedFeatureServiceServer) AddDbxref(context.Context, *FeatureDbxref) (*Feature, error)

func (UnimplementedFeatureServiceServer) AddParentalRelationship 

func (UnimplementedFeatureServiceServer) AddParentalRelationship(context.Context, *FeatureConnection) (*Feature, error)

func (UnimplementedFeatureServiceServer) AddPublication 

func (UnimplementedFeatureServiceServer) AddPublication(context.Context, *FeaturePublication) (*Feature, error)

func (UnimplementedFeatureServiceServer) AddSynonym 

func (UnimplementedFeatureServiceServer) AddSynonym(context.Context, *FeatureSynonym) (*Feature, error)

func (UnimplementedFeatureServiceServer) AttachLocation 

func (UnimplementedFeatureServiceServer) AttachLocation(context.Context, *NewFeatureLocation) (*Feature, error)

func (UnimplementedFeatureServiceServer) CreateFeature 

func (UnimplementedFeatureServiceServer) CreateFeature(context.Context, *NewFeature) (*Feature, error)

func (UnimplementedFeatureServiceServer) CreateOrganism 

func (UnimplementedFeatureServiceServer) CreateOrganism(context.Context, *Organism) (*Organism, error)

func (UnimplementedFeatureServiceServer) DeleteChildRelationship 

func (UnimplementedFeatureServiceServer) DeleteChildRelationship(context.Context, *FeatureConnection) (*emptypb.Empty, error)

func (UnimplementedFeatureServiceServer) DeleteDbxref 

func (UnimplementedFeatureServiceServer) DeleteDbxref(context.Context, *FeatureDbxref) (*emptypb.Empty, error)

func (UnimplementedFeatureServiceServer) DeleteFeature 

func (UnimplementedFeatureServiceServer) DeleteFeature(context.Context, *FeatureId) (*emptypb.Empty, error)

func (UnimplementedFeatureServiceServer) DeleteParentalRelationship 

func (UnimplementedFeatureServiceServer) DeleteParentalRelationship(context.Context, *FeatureConnection) (*emptypb.Empty, error)

func (UnimplementedFeatureServiceServer) DeletePublication 

func (UnimplementedFeatureServiceServer) DeletePublication(context.Context, *FeaturePublication) (*emptypb.Empty, error)

func (UnimplementedFeatureServiceServer) DeleteSynonym 

func (UnimplementedFeatureServiceServer) DeleteSynonym(context.Context, *FeatureSynonym) (*emptypb.Empty, error)

func (UnimplementedFeatureServiceServer) DetachLocation 

func (UnimplementedFeatureServiceServer) DetachLocation(context.Context, *ReferenceFeatureFilter) (*emptypb.Empty, error)

func (UnimplementedFeatureServiceServer) GetChildren 

func (UnimplementedFeatureServiceServer) GetChildren(context.Context, *FeatureRelationFilter) (*FeatureCollection, error)

func (UnimplementedFeatureServiceServer) GetFeature 

func (UnimplementedFeatureServiceServer) GetFeature(context.Context, *FeatureId) (*Feature, error)

func (UnimplementedFeatureServiceServer) GetLocatedFeatures 

func (UnimplementedFeatureServiceServer) GetLocatedFeatures(context.Context, *LocatedFeatureFilter) (*PaginatedFeatureCollection, error)

func (UnimplementedFeatureServiceServer) GetParents 

func (UnimplementedFeatureServiceServer) GetParents(context.Context, *FeatureRelationFilter) (*FeatureCollection, error)

func (UnimplementedFeatureServiceServer) GetReferenceFeature 

func (UnimplementedFeatureServiceServer) GetReferenceFeature(context.Context, *ReferenceFeatureFilter) (*Feature, error)

func (UnimplementedFeatureServiceServer) GetReferenceFeatures 

func (UnimplementedFeatureServiceServer) GetReferenceFeatures(context.Context, *FeatureId) (*FeatureCollection, error)

func (UnimplementedFeatureServiceServer) ListFeatures 

func (UnimplementedFeatureServiceServer) ListFeatures(context.Context, *ListParameters) (*PaginatedFeatureCollection, error)

func (UnimplementedFeatureServiceServer) RemoveNextFeatureHistory 

func (UnimplementedFeatureServiceServer) RemoveNextFeatureHistory(context.Context, *FeatureHistory) (*emptypb.Empty, error)

func (UnimplementedFeatureServiceServer) RemovePrevFeatureHistory 

func (UnimplementedFeatureServiceServer) RemovePrevFeatureHistory(context.Context, *FeatureHistory) (*emptypb.Empty, error)

func (UnimplementedFeatureServiceServer) SetNextFeatureHistory 

func (UnimplementedFeatureServiceServer) SetNextFeatureHistory(context.Context, *FeatureHistory) (*Feature, error)

func (UnimplementedFeatureServiceServer) SetPrevFeatureHistory 

func (UnimplementedFeatureServiceServer) SetPrevFeatureHistory(context.Context, *FeatureHistory) (*Feature, error)

func (UnimplementedFeatureServiceServer) UpdateFeature 

func (UnimplementedFeatureServiceServer) UpdateFeature(context.Context, *FeatureUpdate) (*Feature, error)

type UnsafeFeatureServiceServer 

type UnsafeFeatureServiceServer interface {
	// contains filtered or unexported methods
}

UnsafeFeatureServiceServer may be embedded to opt out of forward compatibility for this service. Use of this interface is not recommended, as added methods to FeatureServiceServer will result in compilation errors.

Source Files

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